BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6915
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated protein 30,
mitochondrial OS=Drosophila melanogaster GN=CG7598 PE=2
SV=1
Length = 296
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/116 (62%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
Query: 2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
YN LV+K RGDGRSY++NLHT G FD+ W D++ Y LYTRGGP+WQI KIPFSKFFL SK
Sbjct: 172 YNMLVMKVRGDGRSYLINLHTEGYFDLMWNDIYHYVLYTRGGPHWQIAKIPFSKFFLSSK 231
Query: 62 GRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTEEFAYEMY 115
GR+QD Q + +R++ G S+ + +GPF LE+DY+G+EYDP+H EEFAYEMY
Sbjct: 232 GRVQDRQGAIPLNRVTHFGFSVAAKKGMDGPFGLEIDYVGLEYDPSHREEFAYEMY 287
>sp|Q18726|CIA30_CAEEL Probable complex I intermediate-associated protein 30,
mitochondrial OS=Caenorhabditis elegans GN=C50B8.3 PE=3
SV=1
Length = 340
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 83/114 (72%)
Query: 2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
++HL++K RGDGRSY + LH+P D TWGD F++ L+T GGPYWQ KIPFSKFF
Sbjct: 217 FSHLLLKVRGDGRSYKIMLHSPLSMDFTWGDSFSHPLHTHGGPYWQYEKIPFSKFFHTVA 276
Query: 62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMY 115
GRIQD Q ++ + SSIG+ L+D+ +G F+LE+DYIG+ D H E+FAYE Y
Sbjct: 277 GRIQDRQYRVNLEDTSSIGIVLMDRIDGDFRLEIDYIGVYNDTTHVEDFAYETY 330
>sp|Q61FQ3|CIA30_CAEBR Probable complex I intermediate-associated protein 30,
mitochondrial OS=Caenorhabditis briggsae GN=CBG11538
PE=3 SV=1
Length = 340
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 83/114 (72%)
Query: 2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
++HL++K RGDGRSY + LH+P D TWGD F++ L+T GGPYWQ KIPFSKFF
Sbjct: 217 FSHLLLKVRGDGRSYKIMLHSPLSMDFTWGDSFSHPLHTHGGPYWQYEKIPFSKFFHTVA 276
Query: 62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMY 115
GRIQD Q ++ + SSIG+ L+D+ +G F+LE+DYIG+ D H E+FAYE Y
Sbjct: 277 GRIQDRQYRVNLEDTSSIGIVLMDRIDGDFKLEIDYIGVYNDTTHVEDFAYETY 330
>sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein 30, mitochondrial
OS=Gorilla gorilla gorilla GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 83/112 (74%)
Query: 2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
+N L ++ RGDGR +M+N+ DF M++Y ++TRGGPYWQ KIPFSKFF ++
Sbjct: 205 FNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNR 264
Query: 62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
GRI+D+Q+ L D+ISSIG +L D+ +GPF LE+D+IG+ DP HTEEFAYE
Sbjct: 265 GRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEFAYE 316
>sp|Q0MQ82|CIA30_PONPY Complex I intermediate-associated protein 30, mitochondrial
OS=Pongo pygmaeus GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 83/112 (74%)
Query: 2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
+N L ++ RGDGR +M+N+ DF M++Y ++TRGGPYWQ KIPFSKFF ++
Sbjct: 205 FNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNR 264
Query: 62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
GRI+D+Q+ L D+ISSIG +L D+ +GPF LE+D+IG+ DP HTEEFAYE
Sbjct: 265 GRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEFAYE 316
>sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein 30, mitochondrial OS=Homo
sapiens GN=NDUFAF1 PE=1 SV=2
Length = 327
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 83/112 (74%)
Query: 2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
+N L ++ RGDGR +M+N+ DF M++Y ++TRGGPYWQ KIPFSKFF ++
Sbjct: 205 FNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNR 264
Query: 62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
GRI+D+Q+ L D+ISSIG +L D+ +GPF LE+D+IG+ DP HTEEFAYE
Sbjct: 265 GRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEFAYE 316
>sp|Q0MQ84|CIA30_PANTR Complex I intermediate-associated protein 30, mitochondrial OS=Pan
troglodytes GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 83/112 (74%)
Query: 2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
+N L ++ RGDGR +M+N+ DF M++Y ++TRGGPYWQ KIPFSKFF ++
Sbjct: 205 FNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNR 264
Query: 62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
GRI+D+Q+ L D+ISSIG +L D+ +GPF LE+D+IG+ DP HTEEFAYE
Sbjct: 265 GRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEFAYE 316
>sp|Q9CWX2|CIA30_MOUSE Complex I intermediate-associated protein 30, mitochondrial OS=Mus
musculus GN=Ndufaf1 PE=2 SV=2
Length = 328
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 83/112 (74%)
Query: 2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
+N L ++ RGDGR +M+N+ +F M++Y ++TRGGPYWQ KIPFSKFF ++
Sbjct: 206 FNTLYLRVRGDGRPWMVNIRQDTEFIQRKNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNQ 265
Query: 62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
GR++D+Q PL D+ISSIG +L D+ +GPF LE+D+IG+ DP HTEEFAYE
Sbjct: 266 GRVRDVQGPLVLDKISSIGFTLSDKVDGPFFLEIDFIGVFTDPAHTEEFAYE 317
>sp|O42636|CIA30_NEUCR Complex I intermediate-associated protein 30, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=cia30 PE=1 SV=1
Length = 278
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
Y +L ++ + D RSY +N+ T + D+ + L+ + W+ I ++ F +
Sbjct: 146 YAYLAMRVKTDARSYFVNVRTESVVPL---DLHQHRLFVKKPGQWETVLIKWNDFVRTNH 202
Query: 62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYI 98
G++ + Q + ++ SIG S D+ GP++L ++ +
Sbjct: 203 GKVIEPQTGMLRQKVLSIGFSTTDRKAGPYELCVERL 239
>sp|Q9LQI7|CIA30_ARATH Probable complex I intermediate-associated protein 30
OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2
Length = 227
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 2 YNHLVIKCRGDGRSYMLNLHT------PGDFDVTWGDMFTYALYTRGGPYWQITKIPFSK 55
Y+ + ++ RGDGR Y+ ++T PG + F +A W KIP ++
Sbjct: 115 YDAIALRIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDS----WYTAKIPLAR 170
Query: 56 FFLQSKGRIQDIQNPLDTDRISSIGLSL--------VDQNNGPFQLELDYI 98
+ +G + D++ ++ R+ + LS+ G F++E+D+I
Sbjct: 171 YLPTWRGNVIDVEMEMNPGRVLGMSLSVNAEGGAVGAKSGAGDFRVEIDWI 221
>sp|Q9KA31|FLIE_BACHD Flagellar hook-basal body complex protein FliE OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=fliE PE=3 SV=1
Length = 102
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 13 GRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLD 72
S +N HTP + T+ + A+ + K+ K L +KG+I+D+ + +
Sbjct: 16 ANSSSVNKHTPAEAQETFKQALSQAI----NNVNDLQKVSAEKTELLAKGKIEDLHDVMI 71
Query: 73 TDRISSIGLS 82
T + +SI LS
Sbjct: 72 TGQKASITLS 81
>sp|O35507|PPARA_CAVPO Peroxisome proliferator-activated receptor alpha OS=Cavia
porcellus GN=PPARA PE=2 SV=1
Length = 467
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 52 PFSKFFLQSKGRIQDIQNPLDTDRISSIGL 81
P S++FLQ G IQDI L D S G
Sbjct: 22 PLSEYFLQEMGTIQDISRSLGEDSSGSFGF 51
>sp|P16218|GUNH_CLOTH Endoglucanase H OS=Clostridium thermocellum (strain ATCC 27405 /
DSM 1237) GN=celH PE=1 SV=1
Length = 900
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 46 WQITKIPFSKFF--LQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLE-LDYIGIEY 102
W+ +IPFS F L + QD+ LD D I SI + +G F ++ + IG
Sbjct: 764 WKTIEIPFSSFRRRLDYQPPGQDMSGTLDLDNIDSIHFMYANNKSGKFVVDNIKLIGATS 823
Query: 103 DP 104
DP
Sbjct: 824 DP 825
>sp|F8WLE0|KLP6_RAT Kinesin-like protein KLP6 OS=Rattus norvegicus GN=Klp6 PE=2 SV=1
Length = 1034
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 41 RGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGI 100
R P+ Q K S+ + R I++P D + + + L ++ FQ + D + I
Sbjct: 22 RVRPFSQREKNSGSQCVISMHARSITIRDPKDAELVKTFTFDLAYWSHDGFQKDEDGVLI 81
Query: 101 EYDPNHTEEFAYEMYLFENEVRGIVN 126
DP T +FA + +F + RGI++
Sbjct: 82 PSDP--TSKFAGQSDVFHDIGRGILD 105
>sp|Q50295|RPOA_MYCPN DNA-directed RNA polymerase subunit alpha OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=rpoA PE=3 SV=1
Length = 327
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 5 LVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRI 64
L + G Y +L P F+V D++ ++L T K+ + + Q +G +
Sbjct: 112 LTVTAEKAGPVYAKDLECPAGFEVVNKDLYLFSLQTD-------KKVTVNVYVKQGRGFV 164
Query: 65 QDIQNPLDTDRISSIGLSLVDQNNGP 90
++N + I+S+G+ D N P
Sbjct: 165 TFLEN---REMINSLGIIATDSNFSP 187
>sp|P03099|VL1_HPV1A Major capsid protein L1 OS=Human papillomavirus type 1a GN=L1 PE=3
SV=2
Length = 508
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 18 LNLHTPGD------FDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPL 71
+N H GD FD MF G +W ++ P + L R+Q I++ +
Sbjct: 140 INTHANGDSRQNTAFDAKQTQMFLVGCTPASGEHWTSSRCPGEQVKLGDCPRVQMIESVI 199
Query: 72 DTDRISSIGLSLVD 85
+ + IG +D
Sbjct: 200 EDGDMMDIGFGAMD 213
>sp|Q672I1|POLG_SVSAP Genome polyprotein OS=Sapporo virus (isolate
GI/Human/Germany/pJG-Sap01) PE=3 SV=1
Length = 2280
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 73 TDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIV 125
T+ I+ L+LV +N F D G D N + ++EMY N++RG V
Sbjct: 2106 TNSINPASLALVRISNNDF----DTSGFANDKNVVVQMSWEMYTGTNQIRGQV 2154
>sp|Q69014|POLG_SVM93 Genome polyprotein (Fragment) OS=Sapporo virus (strain Human/United
Kingdom/Manchester/1993) GN=ORF1 PE=1 SV=1
Length = 2208
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 73 TDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIV 125
T+ I+ L+LV +N F D G D N + ++EMY N++RG V
Sbjct: 2034 TNSINPASLALVRISNNDF----DTSGFANDKNVVVQMSWEMYTGTNQIRGQV 2082
>sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens
GN=CELSR1 PE=1 SV=1
Length = 3014
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 55 KFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNG 89
+F+L S I D+ NPLD + + LS+ Q+ G
Sbjct: 506 QFYLHSLSGILDVINPLDFEDVQKYSLSIKAQDGG 540
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.143 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,851,249
Number of Sequences: 539616
Number of extensions: 2271528
Number of successful extensions: 4068
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4054
Number of HSP's gapped (non-prelim): 21
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)