Query psy6915
Match_columns 127
No_of_seqs 115 out of 427
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:41:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2435|consensus 100.0 3.7E-32 8E-37 213.3 10.3 119 2-120 201-319 (323)
2 PF08547 CIA30: Complex I inte 100.0 4.7E-29 1E-33 182.9 9.6 91 1-95 67-157 (157)
3 PF03425 CBM_11: Carbohydrate 99.0 1.6E-09 3.4E-14 80.9 8.4 92 1-102 72-169 (178)
4 PF04620 FlaA: Flagellar filam 94.3 1 2.2E-05 35.1 10.6 100 4-107 109-213 (217)
5 COG3506 Uncharacterized conser 78.1 28 0.0006 26.5 9.4 32 69-100 149-180 (189)
6 PF14330 DUF4387: Domain of un 54.2 2.6 5.7E-05 29.1 -1.0 17 82-98 7-23 (99)
7 smart00210 TSPN Thrombospondin 54.1 85 0.0019 23.0 9.1 61 42-104 115-184 (184)
8 PHA01795 hypothetical protein 52.5 1.2E+02 0.0026 24.6 8.1 77 14-101 124-214 (280)
9 PF13598 DUF4139: Domain of un 52.5 22 0.00047 28.2 3.8 47 14-63 14-60 (317)
10 COG0835 CheW Chemotaxis signal 41.8 1E+02 0.0022 22.5 5.8 49 72-127 14-62 (165)
11 COG5007 Predicted transcriptio 41.5 31 0.00067 22.9 2.6 20 6-25 18-37 (80)
12 KOG3186|consensus 40.3 14 0.00031 28.2 1.0 73 43-118 41-116 (202)
13 PF03295 Pox_TAA1: Poxvirus tr 37.3 4.2 9.1E-05 25.7 -1.9 32 95-126 3-34 (63)
14 cd07374 CYTH-like_Pase CYTH-li 37.1 36 0.00079 24.5 2.7 23 3-25 49-71 (174)
15 PF14508 GH97_N: Glycosyl-hydr 35.9 83 0.0018 24.7 4.8 36 2-42 79-115 (259)
16 PF09496 CENP-O: Cenp-O kineto 35.2 87 0.0019 20.8 4.1 23 4-26 2-28 (90)
17 COG3025 Uncharacterized conser 31.4 51 0.0011 28.4 3.0 24 3-26 51-74 (432)
18 PF01562 Pep_M12B_propep: Repr 31.3 1.7E+02 0.0037 19.9 8.0 59 3-66 29-87 (131)
19 PF13049 DUF3910: Protein of u 31.3 1.5E+02 0.0032 19.8 4.6 49 2-55 24-76 (93)
20 TIGR02231 conserved hypothetic 30.5 49 0.0011 28.5 2.8 46 15-63 210-255 (525)
21 COG0335 RplS Ribosomal protein 28.4 60 0.0013 23.0 2.5 20 1-20 43-64 (115)
22 PF03944 Endotoxin_C: delta en 28.0 1.3E+02 0.0028 21.3 4.3 91 6-102 41-141 (143)
23 smart00712 PUR DNA/RNA-binding 27.3 1.6E+02 0.0035 18.3 4.7 43 9-57 7-49 (63)
24 cd05163 TRRAP TRansformation/t 27.1 74 0.0016 25.0 3.1 19 6-24 20-39 (253)
25 PF10636 hemP: Hemin uptake pr 27.0 1.3E+02 0.0028 17.1 3.3 19 6-24 14-32 (38)
26 PF09137 Glucodextran_N: Gluco 26.4 95 0.0021 25.0 3.6 18 69-86 44-61 (269)
27 cd08694 C2_Dock-A C2 domains f 24.9 3.2E+02 0.007 21.0 6.2 86 11-100 34-135 (196)
28 cd07756 CYTH-like_Pase_CHAD Un 24.4 84 0.0018 23.7 2.9 23 3-25 50-72 (197)
29 cd05171 PIKKc_ATM Ataxia telan 24.4 83 0.0018 25.0 3.0 21 6-26 19-40 (279)
30 cd07762 CYTH-like_Pase_1 Uncha 22.6 98 0.0021 22.9 2.9 22 4-25 45-66 (180)
31 KOG3658|consensus 22.5 2.1E+02 0.0046 26.3 5.4 54 2-67 62-115 (764)
32 PF13385 Laminin_G_3: Concanav 21.0 2.5E+02 0.0055 18.3 7.6 102 3-110 50-156 (157)
33 cd05170 PIKKc_SMG1 Suppressor 20.9 1.1E+02 0.0024 24.7 3.1 22 5-26 18-40 (307)
No 1
>KOG2435|consensus
Probab=99.97 E-value=3.7e-32 Score=213.28 Aligned_cols=119 Identities=60% Similarity=1.094 Sum_probs=116.2
Q ss_pred cceEEEEEeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCCCCCCccCccEEEE
Q psy6915 2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGL 81 (127)
Q Consensus 2 y~gl~lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I~~iG~ 81 (127)
|+.|.||||||||.|.++|+++..++..|+++|+|.+.|++||-||.++|||+.|.+|++||+++.+-.|++.+|.+|||
T Consensus 201 fn~L~LrvRGDGRsy~inihte~~~dq~wndsys~flft~gGp~wq~~KIPfSKff~t~kGriqDrq~e~nl~~vssig~ 280 (323)
T KOG2435|consen 201 FNTLYLRVRGDGRSYMINIHTETDFDQRWNDSYSYFLFTRGGPYWQEVKIPFSKFFFTNKGRIQDRQHELNLDKVSSIGF 280 (323)
T ss_pred cceEEEEEecCCceEEEEecCccchhhhcccceeeEEecCCCCceeEEecchhhheeccccceeecccccCccceeeEeE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCeeEEEEEcEEEEEeCCCchhhhhhhhccccce
Q psy6915 82 SLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENE 120 (127)
Q Consensus 82 ~i~~kq~G~F~LeI~~I~~~~~~~~~~~~~y~~~~~~~~ 120 (127)
.++++..|||.||||.|+++.+++|+|+|+||+|..+++
T Consensus 281 sl~dk~dGpF~LEIDfIGv~~d~~H~EdFayE~y~~p~~ 319 (323)
T KOG2435|consen 281 SLADKVDGPFFLEIDFIGVFTDPAHTEDFAYENYPEPNP 319 (323)
T ss_pred EEeeccCCcceeeEEEEEEecCCCcccceeeeccccccc
Confidence 999999999999999999999999999999999998875
No 2
>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that it is not directly involved in oxidative phosphorylation [, ].
Probab=99.96 E-value=4.7e-29 Score=182.95 Aligned_cols=91 Identities=43% Similarity=0.748 Sum_probs=85.6
Q ss_pred CcceEEEEEeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCCCCCCccCccEEE
Q psy6915 1 MYNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIG 80 (127)
Q Consensus 1 ~y~gl~lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I~~iG 80 (127)
.|+||+|+||||||+|+++|+++.... ..+|++.|.|+++ +|++|+|||++|+|++||++++++++||+++|++||
T Consensus 67 ~y~~l~l~vrgdGr~Y~~~l~~~~~~~---~~~y~~~f~t~~~-~w~~v~iPFs~F~~~~rG~~v~~~~~l~~~~I~~ig 142 (157)
T PF08547_consen 67 GYDGLELRVRGDGRTYKVNLRTDNDEP---SDSYQARFQTPPG-EWQTVRIPFSDFVPTFRGRPVDDAPPLDPSRIRSIG 142 (157)
T ss_pred CCcEEEEEEEcCCceEEEEEEeCCCCC---CceEEEEEeccCC-ccEEEEEEHHHCceeeCCcccCCCCCcChHHceEEE
Confidence 489999999999999999999998742 5699999999866 799999999999999999999999999999999999
Q ss_pred EEeecCCCeeEEEEE
Q psy6915 81 LSLVDQNNGPFQLEL 95 (127)
Q Consensus 81 ~~i~~kq~G~F~LeI 95 (127)
|+++++++|||+|+|
T Consensus 143 ~~~~~~~~G~F~L~I 157 (157)
T PF08547_consen 143 FMISDKQEGPFELEI 157 (157)
T ss_pred EEEecCCCCCEEEeC
Confidence 999999999999997
No 3
>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.
Probab=99.02 E-value=1.6e-09 Score=80.92 Aligned_cols=92 Identities=21% Similarity=0.340 Sum_probs=55.5
Q ss_pred CcceEEEEEeeCC--ceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceee----ecceecCCCCCCCcc
Q psy6915 1 MYNHLVIKCRGDG--RSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQ----SKGRIQDIQNPLDTD 74 (127)
Q Consensus 1 ~y~gl~lrvrGDG--r~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t----~rG~~~~~~~~ld~~ 74 (127)
.|+||++.+|||| ++..|.+++... ...|.+.+.... +|++|+|||++|.+. --|... ..+||++
T Consensus 72 ~~~gl~Fw~k~dgs~~~l~vqi~d~~~-----~e~~~~~~~~~~--~W~~V~IPF~~f~~~~~~~p~g~~~--~~~ldl~ 142 (178)
T PF03425_consen 72 GYGGLSFWIKGDGSGNKLRVQIKDGGD-----YEYWEASFTDSS--TWKTVEIPFSDFTQRPDYQPGGWGA--DGTLDLT 142 (178)
T ss_dssp T--EEEEEEEE------EEEEEEEE-E-----EEEEEEEE---S--S-EEEEEEGGG-EE--S---TT------SS--TT
T ss_pred cCCcEEEEEEcCCCCcEEEEEEecCCc-----ceeeEeecCCCC--cCEEEEEEHHHcccccccCCCCCCc--ccccChH
Confidence 4899999999665 666666666651 347887777633 599999999999971 112111 2578999
Q ss_pred CccEEEEEeecCCCeeEEEEEcEEEEEe
Q psy6915 75 RISSIGLSLVDQNNGPFQLELDYIGIEY 102 (127)
Q Consensus 75 ~I~~iG~~i~~kq~G~F~LeI~~I~~~~ 102 (127)
+|.+|.|.+.+. .+++.|.||.|++|.
T Consensus 143 ~v~~~~~~~~~~-~~~~~~~iDdI~l~~ 169 (178)
T PF03425_consen 143 NVWEFAFYVNGG-GGAGTFYIDDIRLYG 169 (178)
T ss_dssp SEEEEEEEESSS----EEEEEEEEEEE-
T ss_pred HcEEEEEEEcCC-CceeEEEEEeEEEEe
Confidence 999999998854 445999999999994
No 4
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=94.26 E-value=1 Score=35.11 Aligned_cols=100 Identities=13% Similarity=0.192 Sum_probs=70.2
Q ss_pred eEEEEEeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCCC--CCCccCccEEEE
Q psy6915 4 HLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQN--PLDTDRISSIGL 81 (127)
Q Consensus 4 gl~lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~--~ld~~~I~~iG~ 81 (127)
.|.+-|.|+|..+.|.+.-.+... ..++..+-.-.-..|+.+..+.-...|.-|-+.+...+ +.....|+=.||
T Consensus 109 ~I~vWV~G~n~~h~L~v~lrD~~G----~~~~l~~G~L~f~GWK~L~~~iP~~ip~~r~r~~q~~~~yp~~~~~l~f~gf 184 (217)
T PF04620_consen 109 SISVWVYGDNYPHWLEVLLRDAKG----EVHQLPLGSLNFDGWKNLTVNIPPYIPDVRNRILQQYPRYPRSDPGLKFVGF 184 (217)
T ss_pred EEEEEEECCCCCceEEEEEEcCCC----CEEEEEeeeecCCceeEEEEECCCCCCccceeeeeecccCCCCCCceEEEEE
Confidence 577888999977666665554432 24555554333446999999999999866555544222 334455888899
Q ss_pred Eeec---CCCeeEEEEEcEEEEEeCCCch
Q psy6915 82 SLVD---QNNGPFQLELDYIGIEYDPNHT 107 (127)
Q Consensus 82 ~i~~---kq~G~F~LeI~~I~~~~~~~~~ 107 (127)
.|.. ...|+|-+-+|.+++..|..+.
T Consensus 185 rI~~dp~~~~g~f~iYfDdlkv~tD~~~v 213 (217)
T PF04620_consen 185 RIDRDPDERGGDFYIYFDDLKVLTDKFVV 213 (217)
T ss_pred EEECChhhcCCCEEEEEeeeEEEEEEEEE
Confidence 9975 3689999999999999887655
No 5
>COG3506 Uncharacterized conserved protein [Function unknown]
Probab=78.11 E-value=28 Score=26.48 Aligned_cols=32 Identities=16% Similarity=0.446 Sum_probs=27.1
Q ss_pred CCCCccCccEEEEEeecCCCeeEEEEEcEEEE
Q psy6915 69 NPLDTDRISSIGLSLVDQNNGPFQLELDYIGI 100 (127)
Q Consensus 69 ~~ld~~~I~~iG~~i~~kq~G~F~LeI~~I~~ 100 (127)
+++..++..++|+|+...|.+-|+......++
T Consensus 149 apfp~~~~v~vGvmacSP~r~gf~v~F~e~sL 180 (189)
T COG3506 149 APFPTAKVVSVGVMACSPQRSGFEVTFSEMSL 180 (189)
T ss_pred CCCcccceEEEEeEEecCCcCceEEEEeeeec
Confidence 68888999999999999888889887766554
No 6
>PF14330 DUF4387: Domain of unknown function (DUF4387)
Probab=54.21 E-value=2.6 Score=29.08 Aligned_cols=17 Identities=41% Similarity=0.825 Sum_probs=14.2
Q ss_pred EeecCCCeeEEEEEcEE
Q psy6915 82 SLVDQNNGPFQLELDYI 98 (127)
Q Consensus 82 ~i~~kq~G~F~LeI~~I 98 (127)
+|..|++|||+|.+|=|
T Consensus 7 vIRSKNAGPf~lT~DI~ 23 (99)
T PF14330_consen 7 VIRSKNAGPFELTFDII 23 (99)
T ss_pred HHhccCCCCcEEEEEEE
Confidence 56789999999999844
No 7
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=54.07 E-value=85 Score=23.03 Aligned_cols=61 Identities=28% Similarity=0.375 Sum_probs=37.0
Q ss_pred CCCceEEEEEeCCCceeee--cceecCCC-----C--CCCccCccEEEEEeecCCCeeEEEEEcEEEEEeCC
Q psy6915 42 GGPYWQITKIPFSKFFLQS--KGRIQDIQ-----N--PLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDP 104 (127)
Q Consensus 42 ~~~~W~tv~iPfs~F~~t~--rG~~~~~~-----~--~ld~~~I~~iG~~i~~kq~G~F~LeI~~I~~~~~~ 104 (127)
.+++|..|.|-.+.=.-+. -++.+... . .++++.+.-+|-...+ .++|+-.|.++.++.++
T Consensus 115 ~dg~WH~lal~V~~~~v~LyvDC~~~~~~~l~~~~~~~~~~~g~~~~g~~~~~--~~~f~G~lq~l~i~~dp 184 (184)
T smart00210 115 ADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQPPIDTDGIEVRGAQAAD--RKPFQGDLQQLKIVCDP 184 (184)
T ss_pred ccCCceEEEEEEeCCEEEEEECCccccceecCCcccccccccceEEEeeccCC--CCcceEEeEEEEEecCC
Confidence 3558998888887665542 34333321 1 3444444444433332 46899999999999875
No 8
>PHA01795 hypothetical protein
Probab=52.52 E-value=1.2e+02 Score=24.64 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=41.1
Q ss_pred ceEEEEEEcCCCCCC----cccccEEEEEEeCCCCceEEEEEeCCCceee----------ecceecCCCCCCCccCccEE
Q psy6915 14 RSYMLNLHTPGDFDV----TWGDMFTYALYTRGGPYWQITKIPFSKFFLQ----------SKGRIQDIQNPLDTDRISSI 79 (127)
Q Consensus 14 r~Y~l~L~~~~~~~~----~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t----------~rG~~~~~~~~ld~~~I~~i 79 (127)
++|++.+...-..+. .-+..|.+.+ +++|++|||.+=.|+ ++|.+.-+ .|+..- -|
T Consensus 124 kRykV~~~~~~~~~~~g~~~~g~~~~~sl------~FeT~eLPfgEsi~~si~l~~~s~~Y~Gtvp~s--Qle~~~--~i 193 (280)
T PHA01795 124 YRFKVILDDTINYEFIGKTSQGLKYNLSF------TLRTAELPFGETKPKDITLSGGSFAYRGTAKAS--QLEWPF--II 193 (280)
T ss_pred eEEEEEecCccCHHHccccCCceEEEEEE------EEEEEccccccCCCCcEEEecceEEeCCcccCc--cccCcE--EE
Confidence 788887754432210 0022343333 478999999887665 45553222 232222 33
Q ss_pred EEEeecCCCeeEEEEEcEEEEE
Q psy6915 80 GLSLVDQNNGPFQLELDYIGIE 101 (127)
Q Consensus 80 G~~i~~kq~G~F~LeI~~I~~~ 101 (127)
-|.+. +..+.|.|++..-...
T Consensus 194 ~it~k-~~s~sf~i~ttg~~w~ 214 (280)
T PHA01795 194 ELTPS-GGQTNFYIEIDGRRFE 214 (280)
T ss_pred EEEEe-cCCccEEEEECCcEEE
Confidence 34444 3366888887755544
No 9
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=52.49 E-value=22 Score=28.25 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=38.3
Q ss_pred ceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecce
Q psy6915 14 RSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGR 63 (127)
Q Consensus 14 r~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~ 63 (127)
=.|.++|.+.+.. -...|.+.+....|..|+.|.|-|+.-.|...+.
T Consensus 14 p~Y~l~l~~~~~~---~~l~~~a~V~q~TGeDW~~v~LtLsT~~P~~~~~ 60 (317)
T PF13598_consen 14 PSYDLRLDTETGT---VDLTYWAEVRQNTGEDWNNVKLTLSTARPSRGGT 60 (317)
T ss_pred EEEEEEEeCCCCe---EEEEEEEEEEcCCCCCccCceEEEEeCCCccccc
Confidence 5799999886543 2468999999888889999999999999887654
No 10
>COG0835 CheW Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=41.78 E-value=1e+02 Score=22.49 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=35.8
Q ss_pred CccCccEEEEEeecCCCeeEEEEEcEEEEEeCCCchhhhhhhhccccceEEeeecC
Q psy6915 72 DTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW 127 (127)
Q Consensus 72 d~~~I~~iG~~i~~kq~G~F~LeI~~I~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 127 (127)
......-++|.+.+ ..|.+.|..|+=.......-..+- -|++|.|++||
T Consensus 14 ~~~~~~~l~F~Lg~---e~y~i~i~~V~EI~~~~~iT~vP~----ap~~v~GViNl 62 (165)
T COG0835 14 GENELEFLGFRLGD---EEYGIDILKVREIVGYPPITPVPN----APPYVLGVINL 62 (165)
T ss_pred cCCceEEEEEEECC---EEEEEEeeeEEEEecCCCcccCCC----CCccEEEEEec
Confidence 44566777888875 789999988886665555444443 68899999996
No 11
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=41.46 E-value=31 Score=22.89 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=17.0
Q ss_pred EEEEeeCCceEEEEEEcCCC
Q psy6915 6 VIKCRGDGRSYMLNLHTPGD 25 (127)
Q Consensus 6 ~lrvrGDGr~Y~l~L~~~~~ 25 (127)
++.|+|||..|++++=++.-
T Consensus 18 ~v~V~Gdg~Hf~vi~Vs~~F 37 (80)
T COG5007 18 EVEVEGDGSHFQVIAVSEEF 37 (80)
T ss_pred EEEEecCCceEEEEEehHhh
Confidence 67899999999999977753
No 12
>KOG3186|consensus
Probab=40.26 E-value=14 Score=28.19 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=54.1
Q ss_pred CCceEEEEEeCCCceeeecceecCCCCCCCccCccEEEEEeecC---CCeeEEEEEcEEEEEeCCCchhhhhhhhcccc
Q psy6915 43 GPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQ---NNGPFQLELDYIGIEYDPNHTEEFAYEMYLFE 118 (127)
Q Consensus 43 ~~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I~~iG~~i~~k---q~G~F~LeI~~I~~~~~~~~~~~~~y~~~~~~ 118 (127)
.+-|+...=|+..+..-- ...-.+.|...++.++.++|.+| ....|.++++++....+..+.=..+||||-|.
T Consensus 41 ~pv~~S~hP~Ln~Yi~~v---l~s~~elL~~~~v~~v~l~i~~KE~r~~E~yvf~~~s~p~~~~~~d~~l~~~eq~mRa 116 (202)
T KOG3186|consen 41 TPVWQSRHPILNEYIEEV---LQSCIELLQTGSVHQVALSIINKEQREEERYVFSTDSIPIIPDFLDEFLDAYEQYMRA 116 (202)
T ss_pred CceeeecCchHHHHHHHH---HHHHHHHHhcCCeeEEEEEEEccccChhhheEeeccCCCcCchhHHHHHHHHHHHHHH
Confidence 346888777777765431 12223567888999999999987 44579999999999888777656779999764
No 13
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=37.33 E-value=4.2 Score=25.70 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=26.3
Q ss_pred EcEEEEEeCCCchhhhhhhhccccceEEeeec
Q psy6915 95 LDYIGIEYDPNHTEEFAYEMYLFENEVRGIVN 126 (127)
Q Consensus 95 I~~I~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 126 (127)
|.++-|.+++.-....+-++|..|++|..|+|
T Consensus 3 ik~~vALREEPKisLLPLv~Y~~Pe~Vi~iIN 34 (63)
T PF03295_consen 3 IKSHVALREEPKISLLPLVFYEDPEEVINIIN 34 (63)
T ss_pred ccceeeeccCCcceEEeeeeccCHHHHHHHHH
Confidence 56677888888888888889999999887766
No 14
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=37.11 E-value=36 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.4
Q ss_pred ceEEEEEeeCCceEEEEEEcCCC
Q psy6915 3 NHLVIKCRGDGRSYMLNLHTPGD 25 (127)
Q Consensus 3 ~gl~lrvrGDGr~Y~l~L~~~~~ 25 (127)
.+|+||++.+|+.|.+.||+...
T Consensus 49 ~~lrlR~r~~~~~~~~TlK~~~~ 71 (174)
T cd07374 49 AGLRLRRRTGGADAGWHLKLPGG 71 (174)
T ss_pred CCcEEEEEcCCCccEEEEEccCC
Confidence 46889998888999999998864
No 15
>PF14508 GH97_N: Glycosyl-hydrolase 97 N-terminal; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=35.92 E-value=83 Score=24.69 Aligned_cols=36 Identities=33% Similarity=0.589 Sum_probs=25.4
Q ss_pred cceEEEEEee-CCceEEEEEEcCCCCCCcccccEEEEEEeCC
Q psy6915 2 YNHLVIKCRG-DGRSYMLNLHTPGDFDVTWGDMFTYALYTRG 42 (127)
Q Consensus 2 y~gl~lrvrG-DGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~ 42 (127)
|+.+.|.+++ +|+++.|.+|.-+. +.+|++.+..++
T Consensus 79 yne~~l~~~~~~~~~l~l~fRaydd-----GvAfRY~~p~~~ 115 (259)
T PF14508_consen 79 YNELTLSFKNKYGRRLNLEFRAYDD-----GVAFRYELPEQG 115 (259)
T ss_dssp EEEEEEEECCCCCEEEEEEEEEETT-----EEEEEEEE--BT
T ss_pred EEEEEEEEecCCCceeEEEEEEEcC-----CEEEEEEECCCC
Confidence 7788999987 46688888887764 358888777543
No 16
>PF09496 CENP-O: Cenp-O kinetochore centromere component; InterPro: IPR018464 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) The CENP-O class proteins form a stable complex and are required for proper kinetochore function. They are involved in the prevention of premature sister chromatid separation during recovery from spindle damage []. CENP-O mediates the attachment of the centromere to the mitotic spindle by forming essential interactions between the microtubule-associated outer kinetochore proteins and the centromere-associated inner kinetochore proteins. It has been shown to be involved in chromosome segregation via regulation of the spindle in both yeast [] and human [].; GO: 0007059 chromosome segregation, 0051301 cell division, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3ZXU_C.
Probab=35.17 E-value=87 Score=20.79 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=14.4
Q ss_pred eEEEEEeeC-C---ceEEEEEEcCCCC
Q psy6915 4 HLVIKCRGD-G---RSYMLNLHTPGDF 26 (127)
Q Consensus 4 gl~lrvrGD-G---r~Y~l~L~~~~~~ 26 (127)
||++++... | +.|-+.|+.....
T Consensus 2 GiR~di~~~~g~f~~pYYviL~~~~~~ 28 (90)
T PF09496_consen 2 GIRFDIFSREGRFLEPYYVILKRPSKS 28 (90)
T ss_dssp EEEE--EETTTEE---EEEEEEE-SSS
T ss_pred EEEEEEEcCCCCCCCceEEEEEecCCC
Confidence 889999877 7 6889999887654
No 17
>COG3025 Uncharacterized conserved protein [Function unknown]
Probab=31.43 E-value=51 Score=28.37 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.3
Q ss_pred ceEEEEEeeCCceEEEEEEcCCCC
Q psy6915 3 NHLVIKCRGDGRSYMLNLHTPGDF 26 (127)
Q Consensus 3 ~gl~lrvrGDGr~Y~l~L~~~~~~ 26 (127)
.++-||||+.|..|..+||+.+..
T Consensus 51 ~~~gLRIR~~~~~y~~TlKtaG~v 74 (432)
T COG3025 51 HDMGLRIRREGGQYEQTLKTAGGV 74 (432)
T ss_pred CCceEEEeccCCeEEEEEEecCcc
Confidence 467899999999999999999865
No 18
>PF01562 Pep_M12B_propep: Reprolysin family propeptide; InterPro: IPR002870 This signature covers the region of the propeptide for members of the MEROPS peptidase family M12B (clan MA(M), adamalysin family). The propeptide contains a sequence motif similar to the "cysteine switch" of the matrixins, which mediate cell-cell or cell-matrix interactions.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis
Probab=31.35 E-value=1.7e+02 Score=19.90 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=38.5
Q ss_pred ceEEEEEeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecC
Q psy6915 3 NHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQD 66 (127)
Q Consensus 3 ~gl~lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~ 66 (127)
+.+.++++..|+.|.|+|+.+...-. ..+........+ . .+...|...=.-.|+|.+..
T Consensus 29 ~~~~~~~~a~g~~~~L~L~~n~~l~~---~~~~v~~~~~~g-~-~~~~~~~~~~~c~Y~G~V~g 87 (131)
T PF01562_consen 29 SHLSYSFRAFGREFHLDLEPNHSLFS---PGFVVEVRNEDG-T-REESSPSHQEHCHYQGHVEG 87 (131)
T ss_pred ceEEEEEEECCEEEEEEEEECCcccC---CCCEEEEEcccc-c-ccccCCccccceEEEeeeCC
Confidence 45788999999999999999876532 345555554333 2 24555544444457888655
No 19
>PF13049 DUF3910: Protein of unknown function (DUF3910)
Probab=31.32 E-value=1.5e+02 Score=19.79 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=27.1
Q ss_pred cceEE--EEEeeCCceEEEEEEcCCCCCCcccccEEEEEE-eCCCCc-eEEEEEeCCC
Q psy6915 2 YNHLV--IKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALY-TRGGPY-WQITKIPFSK 55 (127)
Q Consensus 2 y~gl~--lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~-t~~~~~-W~tv~iPfs~ 55 (127)
|++.. +.+.+|.++|++.+-..+.. ..|...-+ +++|.+ -=-|.|||..
T Consensus 24 yda~~idfsl~~ddnryklivlk~e~~-----~hyk~vqyg~kpgsqkpfpidipf~~ 76 (93)
T PF13049_consen 24 YDATSIDFSLENDDNRYKLIVLKHEEN-----THYKFVQYGIKPGSQKPFPIDIPFEQ 76 (93)
T ss_pred eeeeEEEEEeccCCCeEEEEEEeccCc-----ceeEEEEeccCcCCCCCccccccchh
Confidence 45444 45578999999887655432 24554433 333311 1246667653
No 20
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.49 E-value=49 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=32.4
Q ss_pred eEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecce
Q psy6915 15 SYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGR 63 (127)
Q Consensus 15 ~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~ 63 (127)
.|.++|.+.... -+..|.+.+....|.+|..|.|-|+.-.|...+.
T Consensus 210 ~Ydlrl~~~~~~---~~l~~~A~V~Q~TGeDW~~V~LtLsTa~P~~~~~ 255 (525)
T TIGR02231 210 SYDARLDTGAPT---VELTYLAEIRQSTGEDWSDIPLVLSTAQPSLGGR 255 (525)
T ss_pred eeEEEecCCCce---EEEEEEEEEEeCCCCCCCCCcEEEeccCCCCCCC
Confidence 566666554321 1346777777666778999999999999987553
No 21
>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]
Probab=28.44 E-value=60 Score=23.01 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=14.8
Q ss_pred CcceEEEEEeeCC--ceEEEEE
Q psy6915 1 MYNHLVIKCRGDG--RSYMLNL 20 (127)
Q Consensus 1 ~y~gl~lrvrGDG--r~Y~l~L 20 (127)
+|+|+.|+.+|.| .+|.++=
T Consensus 43 ~FeGvVia~r~~G~~~tftvRk 64 (115)
T COG0335 43 AFEGVVIARRGRGISETFTVRK 64 (115)
T ss_pred eeeEEEEEECCCCccceEEEEE
Confidence 5899999999888 4554443
No 22
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=28.01 E-value=1.3e+02 Score=21.29 Aligned_cols=91 Identities=9% Similarity=0.074 Sum_probs=44.6
Q ss_pred EEEEe---eCCceEEEEEEcCCCCCCc-----ccccE--EEEEEeCCCCceEEEEEeCCCceeeecceecCCCCCCCccC
Q psy6915 6 VIKCR---GDGRSYMLNLHTPGDFDVT-----WGDMF--TYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDR 75 (127)
Q Consensus 6 ~lrvr---GDGr~Y~l~L~~~~~~~~~-----~~~~y--~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~ 75 (127)
.++|. .-.++|++++|-....+.. +.... ...+..... ....+.+..++|...--... -.+....
T Consensus 41 ~~~v~~~~~~~~~YrIRiRYAs~~~~~~~i~~~~~~~~~~~~~~~T~~-~~~~~~~~y~~F~y~~~~~~----~~~~~~~ 115 (143)
T PF03944_consen 41 KIRVTINNSSSQKYRIRIRYASNSNGTLSISINNSSGNLSFNFPSTMS-NGDNLTLNYESFQYVEFPTP----FTFSSNQ 115 (143)
T ss_dssp EEEEEESSSSTEEEEEEEEEEESS-EEEEEEETTEEEECEEEE--SSS-TTGGCCETGGG-EEEEESSE----EEESTSE
T ss_pred EEEEEecCCCCceEEEEEEEEECCCcEEEEEECCccceeeeecccccc-CCCccccccceeEeeecCce----EEecCCC
Confidence 66666 3448899999877654310 11111 333443322 12235555667766532111 1233333
Q ss_pred ccEEEEEeecCCCeeEEEEEcEEEEEe
Q psy6915 76 ISSIGLSLVDQNNGPFQLELDYIGIEY 102 (127)
Q Consensus 76 I~~iG~~i~~kq~G~F~LeI~~I~~~~ 102 (127)
...+-+.+..... .=.|-||.|++..
T Consensus 116 ~~~~~i~i~~~~~-~~~v~IDkIEFIP 141 (143)
T PF03944_consen 116 SITITISIQNISS-NGNVYIDKIEFIP 141 (143)
T ss_dssp EEEEEEEEESSTT-TS-EEEEEEEEEE
T ss_pred ceEEEEEEEecCC-CCeEEEEeEEEEe
Confidence 4556666664422 2678889999864
No 23
>smart00712 PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
Probab=27.33 E-value=1.6e+02 Score=18.33 Aligned_cols=43 Identities=5% Similarity=-0.023 Sum_probs=28.1
Q ss_pred EeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCce
Q psy6915 9 CRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFF 57 (127)
Q Consensus 9 vrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~ 57 (127)
++-+.|+|.+.|+.+... .|---....++..=.+|.||.+++.
T Consensus 7 l~~~~k~fyfDvk~N~rG------~fLrIsE~~~~~~r~~I~lp~~~~~ 49 (63)
T smart00712 7 LTVENKRFYFDVKENRRG------RFLRISEVKNNGGRSSITVPEQGAA 49 (63)
T ss_pred EEeCCcEEEEEecccCCc------cEEEEEEecCCCCceEEEEEHHHHH
Confidence 466889999999988742 3443333434423578888876553
No 24
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=27.10 E-value=74 Score=24.99 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=14.2
Q ss_pred EEEEee-CCceEEEEEEcCC
Q psy6915 6 VIKCRG-DGRSYMLNLHTPG 24 (127)
Q Consensus 6 ~lrvrG-DGr~Y~l~L~~~~ 24 (127)
+|.++| ||+.|.+-++...
T Consensus 20 ri~i~gsdG~~y~fLvk~~~ 39 (253)
T cd05163 20 RLTIRGHDGSIYPFLVQYPA 39 (253)
T ss_pred EEEEECCCCCEEEEEEecCC
Confidence 355664 9999999998654
No 25
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=27.01 E-value=1.3e+02 Score=17.11 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=15.3
Q ss_pred EEEEeeCCceEEEEEEcCC
Q psy6915 6 VIKCRGDGRSYMLNLHTPG 24 (127)
Q Consensus 6 ~lrvrGDGr~Y~l~L~~~~ 24 (127)
++.+.-+|..|.+++....
T Consensus 14 ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 14 EVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEEEETTEEEEEEEETTT
T ss_pred EEEEEeCCeEEEeeEccCC
Confidence 5778889999999986553
No 26
>PF09137 Glucodextran_N: Glucodextranase, domain N; InterPro: IPR015220 Glucodextranase domain N, uniquely found in bacterial and archaeal glucoamylases and glucodextranases, adopts a structure consisting of 17 antiparallel beta-strands. These beta-strands are divided into two beta-sheets, and one of the beta-sheets is wrapped by an extended polypeptide, which appears to stabilise the domain. This domain, together with glycoside hydrolase domain A (IPR011613 from INTERPRO), is mainly involved with catalytic activity, hydrolysing alpha-1,6-glucosidic linkages of dextran to release beta-D-glucose from the non-reducing end via an inverting reaction mechanism []. ; PDB: 1UG9_A 1ULV_A 1LF6_B 1LF9_A.
Probab=26.44 E-value=95 Score=24.99 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=13.9
Q ss_pred CCCCccCccEEEEEeecC
Q psy6915 69 NPLDTDRISSIGLSLVDQ 86 (127)
Q Consensus 69 ~~ld~~~I~~iG~~i~~k 86 (127)
|.+|..+|+.|+|++.|+
T Consensus 44 P~iD~~qiRdl~fiVtDg 61 (269)
T PF09137_consen 44 PRIDTPQIRDLQFIVTDG 61 (269)
T ss_dssp SSTT-EEEEEEEEEEE-S
T ss_pred cCCCCccceeeEEEEEcC
Confidence 678889999999999863
No 27
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=24.88 E-value=3.2e+02 Score=20.97 Aligned_cols=86 Identities=16% Similarity=0.255 Sum_probs=41.7
Q ss_pred eCCceEEEEEEcCCCCCCcccccEEEEE-EeCCCCce-EE--EEEeCCCceee-----ecceecCCCCCCC-ccCccEEE
Q psy6915 11 GDGRSYMLNLHTPGDFDVTWGDMFTYAL-YTRGGPYW-QI--TKIPFSKFFLQ-----SKGRIQDIQNPLD-TDRISSIG 80 (127)
Q Consensus 11 GDGr~Y~l~L~~~~~~~~~~~~~y~~~f-~t~~~~~W-~t--v~iPfs~F~~t-----~rG~~~~~~~~ld-~~~I~~iG 80 (127)
.||..-.-.+-...... ....|...+ +...+|.| ++ |.||.+.|.-. +|=+-..+.+ | +...-.++
T Consensus 34 ~~G~~i~~~i~~gsg~~--~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~k--d~~e~pfg~s 109 (196)
T cd08694 34 EDGKIIPGVISLGAGEE--PIDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAK--DKSEKPFALS 109 (196)
T ss_pred CCCCCCceeEEcCCCCC--cceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecccccc--CCCCCceEEE
Confidence 46755443343333222 123555554 56677889 34 55677766443 3332211111 1 12222333
Q ss_pred EEee---cC---CCeeEEEEEcEEEE
Q psy6915 81 LSLV---DQ---NNGPFQLELDYIGI 100 (127)
Q Consensus 81 ~~i~---~k---q~G~F~LeI~~I~~ 100 (127)
++=. ++ +.|++.|-|-.+.-
T Consensus 110 ~lpL~~~~gt~l~dG~H~L~vYK~d~ 135 (196)
T cd08694 110 FVKLMQENGTTLTDGEHDLIVYKVDA 135 (196)
T ss_pred EEeeeccCCcEEccCCEEEEEEEecc
Confidence 3211 22 68999999887764
No 28
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=24.45 E-value=84 Score=23.70 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=18.6
Q ss_pred ceEEEEEeeCCceEEEEEEcCCC
Q psy6915 3 NHLVIKCRGDGRSYMLNLHTPGD 25 (127)
Q Consensus 3 ~gl~lrvrGDGr~Y~l~L~~~~~ 25 (127)
.++.||+|..|..|.++||....
T Consensus 50 ~~~aLRiR~~~~~~~~TlK~~~~ 72 (197)
T cd07756 50 AGIALRVRREGGQWVQTLKTAGS 72 (197)
T ss_pred CCCEEEEEeeCCeEEEEEeeCCc
Confidence 46788998878889999998753
No 29
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=24.42 E-value=83 Score=24.97 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=16.7
Q ss_pred EEEEee-CCceEEEEEEcCCCC
Q psy6915 6 VIKCRG-DGRSYMLNLHTPGDF 26 (127)
Q Consensus 6 ~lrvrG-DGr~Y~l~L~~~~~~ 26 (127)
+|.++| ||+.|.+-++..+..
T Consensus 19 ri~~~gsdG~~y~fl~K~~dDl 40 (279)
T cd05171 19 IITCVGSDGKKYKQLLKGGDDD 40 (279)
T ss_pred EEEEECCCCCEEEEEecCCCcc
Confidence 566766 999999999987653
No 30
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=22.57 E-value=98 Score=22.89 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=17.3
Q ss_pred eEEEEEeeCCceEEEEEEcCCC
Q psy6915 4 HLVIKCRGDGRSYMLNLHTPGD 25 (127)
Q Consensus 4 gl~lrvrGDGr~Y~l~L~~~~~ 25 (127)
+..||||..|..+.++|+....
T Consensus 45 ~~aLRiR~~~~~~~~TlK~~~~ 66 (180)
T cd07762 45 HSALRIREKEGKAELTLKVPQE 66 (180)
T ss_pred CcEEEEEeeCCeEEEEEeeCCC
Confidence 5677888777889999998764
No 31
>KOG3658|consensus
Probab=22.53 E-value=2.1e+02 Score=26.33 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=40.5
Q ss_pred cceEEEEEeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCC
Q psy6915 2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDI 67 (127)
Q Consensus 2 y~gl~lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~ 67 (127)
.++|.|+.-.=||.|.|.|+.+... .+-.+.+++..++ +.+-.++| |-|.+..+
T Consensus 62 ~~~l~l~F~a~~R~F~l~L~~~~~~-----f~~~fkv~~~dg~----~d~~~~~~---YtG~v~ge 115 (764)
T KOG3658|consen 62 ASTLALTFSALGRHFRLRLHPDTST-----FSHNFKVYTVDGP----IDVDPSHF---YTGHVVGE 115 (764)
T ss_pred cceEEEEEeecCceEEEEEeccccc-----hhccceEEeecCC----ccccccce---eeeEEecC
Confidence 5688899999999999999988532 2455566776664 77888888 56777664
No 32
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=21.01 E-value=2.5e+02 Score=18.32 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=46.5
Q ss_pred ceEEEEEeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCC--ceeeecceecCCCCCCCc-cCccEE
Q psy6915 3 NHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSK--FFLQSKGRIQDIQNPLDT-DRISSI 79 (127)
Q Consensus 3 ~gl~lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~--F~~t~rG~~~~~~~~ld~-~~I~~i 79 (127)
+++.|.+.++| ...+.+...... ...+......+.+ +|..|.+-++. ...+.-|..+...+.-.. .....-
T Consensus 50 ~~~~l~~~~~~-~l~~~~~~~~~~----~~~~~~~~~~~~~-~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~~~~ 123 (157)
T PF13385_consen 50 GGFGLFINNNG-RLRFYIGNGGGG----NYSFSSDSNLPDN-KWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLNSNG 123 (157)
T ss_dssp EEEEEEEETTS-EEEEEETTSEEE----SS-EE-BS---TT--EEEEEEEEETTEEEEEETTEEETTCTEESSSSTTSCC
T ss_pred CEEEEEEECCC-EEEEEEeCCCce----eEEEecCcccCCC-CEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCCCcc
Confidence 35666665444 555555444311 0122222333344 89888877753 333445666553221111 112233
Q ss_pred EEEeecC--CCeeEEEEEcEEEEEeCCCchhhh
Q psy6915 80 GLSLVDQ--NNGPFQLELDYIGIEYDPNHTEEF 110 (127)
Q Consensus 80 G~~i~~k--q~G~F~LeI~~I~~~~~~~~~~~~ 110 (127)
.+.|... ...+|...|+.|.+|...-..+|+
T Consensus 124 ~~~iG~~~~~~~~~~g~i~~~~i~~~aLt~~eI 156 (157)
T PF13385_consen 124 PLFIGGSGGGSSPFNGYIDDLRIYNRALTAEEI 156 (157)
T ss_dssp EEEESS-STT--B-EEEEEEEEEESS---HHHH
T ss_pred eEEEeecCCCCCceEEEEEEEEEECccCCHHHc
Confidence 3444432 357899999999999766555543
No 33
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=20.89 E-value=1.1e+02 Score=24.67 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=17.2
Q ss_pred EEEEEee-CCceEEEEEEcCCCC
Q psy6915 5 LVIKCRG-DGRSYMLNLHTPGDF 26 (127)
Q Consensus 5 l~lrvrG-DGr~Y~l~L~~~~~~ 26 (127)
.+|.++| ||+.|.+-++..+..
T Consensus 18 kri~~~gsDG~~y~fLlK~~dDL 40 (307)
T cd05170 18 KKLAFLGSDGKKYTYLFKGREDL 40 (307)
T ss_pred eEEEEECCCCCEEEEEecCCCcc
Confidence 3577777 999999999976443
Done!