Query psy6915
Match_columns 127
No_of_seqs 115 out of 427
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:42:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0a_A Endoglucanase H; carboh 99.8 1.5E-18 5.1E-23 129.6 11.3 99 1-106 67-173 (178)
2 1wmx_A COG3291: FOG: PKD repea 96.1 0.099 3.4E-06 39.2 11.0 91 3-104 85-181 (205)
3 3f95_A Beta-glucosidase; beta- 79.9 4.9 0.00017 29.6 6.2 50 42-106 127-176 (193)
4 1wky_A Endo-beta-1,4-mannanase 75.3 29 0.00099 28.2 10.2 42 45-100 420-463 (464)
5 1gu3_A Endoglucanase C; carboh 64.2 33 0.0011 23.7 10.4 25 78-102 124-148 (149)
6 3p6b_A Cellulose 1,4-beta-cell 63.3 37 0.0013 24.7 7.7 28 75-102 164-193 (205)
7 3orj_A Sugar-binding protein; 57.6 3.1 0.00011 34.5 0.9 43 11-57 299-352 (439)
8 3k4z_A Glycoside hydrolase fam 56.6 46 0.0016 25.5 7.5 28 75-102 143-172 (289)
9 2uur_A Collagen alpha-1(IX) ch 40.5 1.1E+02 0.0038 22.7 10.6 65 42-107 153-224 (245)
10 2vtf_A Endo-beta-N-acetylgluco 35.3 2.1E+02 0.0073 24.5 8.9 42 44-100 487-528 (626)
11 4het_A Hypothetical glycoside 31.6 1.3E+02 0.0044 23.9 6.6 51 44-104 299-360 (360)
12 3h8z_A FragIle X mental retard 31.6 27 0.00091 24.0 2.2 48 2-59 3-52 (128)
13 4b1m_A Levanase; hydrolase, CB 29.3 57 0.0019 22.9 3.8 20 4-23 84-104 (185)
14 2eke_C Ubiquitin-like protein 28.2 83 0.0028 20.5 4.2 69 3-83 30-101 (106)
15 2io0_B Small ubiquitin-related 26.8 94 0.0032 19.5 4.1 70 3-84 4-77 (91)
16 3o12_A Uncharacterized protein 26.8 1.8E+02 0.0063 21.1 8.9 25 77-101 184-208 (221)
17 4emo_A Sharpin; pleckstrin hom 26.2 46 0.0016 22.9 2.6 24 74-97 41-64 (129)
18 2io1_B Small ubiquitin-related 25.7 1E+02 0.0034 19.4 4.1 70 3-84 6-79 (94)
19 2bwf_A Ubiquitin-like protein 25.6 69 0.0024 18.4 3.2 55 5-71 5-59 (77)
20 2gfg_A BH2851; antiparallel ba 25.5 35 0.0012 24.3 2.0 22 4-25 52-73 (193)
21 3gdb_A Endo-D, putative unchar 24.3 4E+02 0.014 24.1 9.0 14 43-56 641-654 (937)
22 1wm3_A Ubiquitin-like protein 23.9 88 0.003 18.4 3.4 51 5-67 2-53 (72)
23 2w91_A Endo-beta-N-acetylgluco 23.5 3.5E+02 0.012 23.2 8.3 45 44-103 491-536 (653)
24 3b1l_X E3 ubiquitin-protein li 26.6 20 0.00069 21.0 0.0 54 6-71 2-56 (76)
25 2d07_B Ubiquitin-like protein 20.9 1.2E+02 0.0043 18.8 3.9 53 3-67 16-69 (93)
No 1
>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30
Probab=99.78 E-value=1.5e-18 Score=129.55 Aligned_cols=99 Identities=18% Similarity=0.281 Sum_probs=78.1
Q ss_pred CcceEEEEEee---CCceEEEEEEcCCCCC-CcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCC----CCCC
Q psy6915 1 MYNHLVIKCRG---DGRSYMLNLHTPGDFD-VTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQ----NPLD 72 (127)
Q Consensus 1 ~y~gl~lrvrG---DGr~Y~l~L~~~~~~~-~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~----~~ld 72 (127)
.|+||+|+|+| ||++|+|+||+..... .+| ..|++.|.+. +.|++|+|||++|. +|...++.. ++||
T Consensus 67 ~~~GI~l~vkG~~~nG~~y~~~LR~~~~~~~~~~-~~y~~sF~t~--~~W~~IeIPFs~F~--~r~~~~P~~~~~~~~~d 141 (178)
T 1v0a_A 67 KWLKISFDIKSVDGSANEIRFMIAEKSINGVGDG-EHWVYSITPD--SSWKTIEIPFSSFR--RRLDYQPPGQDMSGTLD 141 (178)
T ss_dssp TCCEEEEEEEEC---CCCEEEEEEEECTTSSSEE-EEEEEEECCC--SSCEEEEEEGGGCE--ECCSCCCTTCCCCSSCC
T ss_pred HCCcEEEEEEcCCCCCCEEEEEEeeCCCCCCCCC-eeEEEEecCC--CcCEEEEEEHHHhc--cccccCCCCcccCCCcC
Confidence 38999999999 6999999999976542 133 3999999986 47999999999999 444444332 3899
Q ss_pred ccCccEEEEEeecCCCeeEEEEEcEEEEEeCCCc
Q psy6915 73 TDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNH 106 (127)
Q Consensus 73 ~~~I~~iG~~i~~kq~G~F~LeI~~I~~~~~~~~ 106 (127)
+++|++|+||++...+|. |.|++|++|....+
T Consensus 142 ~~~i~si~~m~G~~~~g~--~~id~I~l~~~~~~ 173 (178)
T 1v0a_A 142 LDNIDSIHFMYANNKSGK--FVVDNIKLIGALEH 173 (178)
T ss_dssp TTSEEEEEEEESSSCCEE--EEEEEEEEECBCCC
T ss_pred hhHeEEEEEEEcCCCcce--EEEEEEEEEeeecc
Confidence 999999999987644554 99999999965443
No 2
>1wmx_A COG3291: FOG: PKD repeat; CBM30, carbohydrate binding module family30, CELJ, sugar BIN protein; 2.00A {Clostridium thermocellum} SCOP: b.18.1.24 PDB: 1wzx_A 2c24_A
Probab=96.11 E-value=0.099 Score=39.23 Aligned_cols=91 Identities=18% Similarity=0.306 Sum_probs=59.5
Q ss_pred ceEEEEEee--CCceEEEEEEcCCCCCCcccccEEEEEE----eCCCCceEEEEEeCCCceeeecceecCCCCCCCccCc
Q psy6915 3 NHLVIKCRG--DGRSYMLNLHTPGDFDVTWGDMFTYALY----TRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRI 76 (127)
Q Consensus 3 ~gl~lrvrG--DGr~Y~l~L~~~~~~~~~~~~~y~~~f~----t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I 76 (127)
.+|++-||| -|..+.+-+.+.... +..+..-|.... ...+.+||-|.+|+.+| .. + ...+|+.+.
T Consensus 85 G~leF~IKG~~GGE~~~ig~~D~~~e-~~~g~~~~~~~~~~~yi~VttEwQHvsiPLkdF-M~------e-~td~dpr~~ 155 (205)
T 1wmx_A 85 GYLEFDIKGKEGGEDFVIGFRDKVYE-RVYGLEIDVTTVISNYVTVTTDWQHVKIPLRDL-MK------I-NNGFDPSSV 155 (205)
T ss_dssp CEEEEEEEESSSCCCCEEEEEECCTT-CTTCSSCEEEEEGGGTCCCCSSCEEEEEEGGGT-SC------S-TTCCCTTSE
T ss_pred CeEEEEEecccCceeEEEEEeccccc-ccCCceeEEEeechheEEeccccEEEEeeHHHh-cc------c-cCCcCcccc
Confidence 368999998 568999999877321 111122222222 12456899999999999 33 1 234555554
Q ss_pred cEEEEEeecCCCeeEEEEEcEEEEEeCC
Q psy6915 77 SSIGLSLVDQNNGPFQLELDYIGIEYDP 104 (127)
Q Consensus 77 ~~iG~~i~~kq~G~F~LeI~~I~~~~~~ 104 (127)
. .|.+.....+||+.-||+|++....
T Consensus 156 ~--~fnlgk~~~~phtVwIDNIkLts~D 181 (205)
T 1wmx_A 156 T--CLVFSKRYADPFTVWFSDIKITSED 181 (205)
T ss_dssp E--EEEEECSSSCCEEEEEEEEEEECC-
T ss_pred e--EEEecCCCCCceEEEEeeEEEEecC
Confidence 4 4666655789999999999987543
No 3
>3f95_A Beta-glucosidase; beta-sandwich, hydrolase; 1.80A {Pseudoalteromonas SP}
Probab=79.93 E-value=4.9 Score=29.62 Aligned_cols=50 Identities=14% Similarity=0.294 Sum_probs=32.3
Q ss_pred CCCceEEEEEeCCCceeeecceecCCCCCCCccCccEEEEEeecCCCeeEEEEEcEEEEEeCCCc
Q psy6915 42 GGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNH 106 (127)
Q Consensus 42 ~~~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I~~iG~~i~~kq~G~F~LeI~~I~~~~~~~~ 106 (127)
+.++|+++.||++- ... -.|.++|.+- |+|.. . ++.|.|.+|++....+.
T Consensus 127 ~~g~W~tv~IpL~C-a~~----------G~D~s~V~~P-f~L~t--~-~~~lsianIrl~~~~a~ 176 (193)
T 3f95_A 127 ADKSWHTLAIPLHC-DDS----------DQAEQPITDA-LRITS--Q-NLSLAIADVALTIKPSD 176 (193)
T ss_dssp TTCCCEEEEEESCC------------------CEEEEE-EEEEE--S-SEEEEEEEEEEESSCCT
T ss_pred cCCCCEEEEEeCcc-ccc----------CCCHHHcCCc-cEEEe--C-CcEEEEEEEEEecCCCC
Confidence 34589999999998 433 2555666554 55553 3 89999999999866554
No 4
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=75.29 E-value=29 Score=28.18 Aligned_cols=42 Identities=12% Similarity=0.266 Sum_probs=33.7
Q ss_pred ceEEEEEeCCCceeeecceecCCCCCCCccCccEEEEEeecC--CCeeEEEEEcEEEE
Q psy6915 45 YWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQ--NNGPFQLELDYIGI 100 (127)
Q Consensus 45 ~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I~~iG~~i~~k--q~G~F~LeI~~I~~ 100 (127)
+|.++.|+|+.. -|.++|+.+|+-+... ..|.-.+-||+|.+
T Consensus 420 ~~~~l~~~l~~~--------------~~~~~~~~~gv~~~~~~~~~~~~~~yvd~v~~ 463 (464)
T 1wky_A 420 SGTTLSLDLSNV--------------QNLSQVREIGVQFQSESNSSGQTSIYIDNVIV 463 (464)
T ss_dssp SCEEEEEECTTC--------------SCGGGEEEEEEEEEECTTCCEEEEEEEEEEEE
T ss_pred CceEEEEEcccC--------------cchhhhhhEEEEEEcCCCCCcceEEEEEEEEe
Confidence 688999888332 1688999999999865 35899999999976
No 5
>1gu3_A Endoglucanase C; carbohydrate-binding module, carbohydrate binding module, CBM, cellulose; HET: BGC; 2.3A {Cellulomonas fimi} SCOP: b.18.1.14 PDB: 1ulo_A 1ulp_A
Probab=64.21 E-value=33 Score=23.71 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=19.7
Q ss_pred EEEEEeecCCCeeEEEEEcEEEEEe
Q psy6915 78 SIGLSLVDQNNGPFQLELDYIGIEY 102 (127)
Q Consensus 78 ~iG~~i~~kq~G~F~LeI~~I~~~~ 102 (127)
+|.|.+.+-..++..+.||.|++..
T Consensus 124 rl~f~lG~~~~~~~tv~iDnVsL~~ 148 (149)
T 1gu3_A 124 QIAFQLGGFSADAWTLCLDDVALDS 148 (149)
T ss_dssp EEEEECTTSCSSCEEEEEEEEEEEE
T ss_pred EEEEEcCCCCCCCcEEEEEEEEEec
Confidence 7888887524568999999999864
No 6
>3p6b_A Cellulose 1,4-beta-cellobiosidase; beta-sandwich, carbohydrate binding, sugar binding protein; 2.00A {Clostridium thermocellum}
Probab=63.29 E-value=37 Score=24.74 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=19.9
Q ss_pred CccEEEEEeecC--CCeeEEEEEcEEEEEe
Q psy6915 75 RISSIGLSLVDQ--NNGPFQLELDYIGIEY 102 (127)
Q Consensus 75 ~I~~iG~~i~~k--q~G~F~LeI~~I~~~~ 102 (127)
...+|.|-+.+. ...+-.+.||+|++..
T Consensus 164 ~~~rl~F~lG~~~~~~~~~tv~iDnVsL~~ 193 (205)
T 3p6b_A 164 DTCEFTFHLGGELAAGTPYYVYLDDVSLYD 193 (205)
T ss_dssp EEEEEEEECCGGGCCSSSEEEEEEEEEEEC
T ss_pred CceEEEEECCCCcccCCCCEEEEEeEEEeC
Confidence 445777777642 2357899999999973
No 7
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=57.63 E-value=3.1 Score=34.50 Aligned_cols=43 Identities=23% Similarity=0.478 Sum_probs=26.5
Q ss_pred eCCceEEEEEEcCCCCCCccc-ccEEE----------EEEeCCCCceEEEEEeCCCce
Q psy6915 11 GDGRSYMLNLHTPGDFDVTWG-DMFTY----------ALYTRGGPYWQITKIPFSKFF 57 (127)
Q Consensus 11 GDGr~Y~l~L~~~~~~~~~~~-~~y~~----------~f~t~~~~~W~tv~iPfs~F~ 57 (127)
+.+-.+++.|+.+-.. +.|+ +.|.+ .|.| . .||||.|||+.|.
T Consensus 299 ~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 352 (439)
T 3orj_A 299 SESGFLKICGQNGFNG-GEWERDCYNYVPWLVDGKIVPFQT--T-GWQTVTVPFSEFY 352 (439)
T ss_dssp CSSCEEEEESSSCCCS-SCCSSSEEEECTTBSSSSBCCBCC--S-SCEEEEEEGGGSG
T ss_pred CCCceEEEEEecCcCc-ccccccceeeccccccCeEeeeec--c-CceEEEeehHHhh
Confidence 4556677777655432 3443 24533 2343 2 4999999999994
No 8
>3k4z_A Glycoside hydrolase family 9; cellulase, CBHA, CBM4, IG-like, cellulosome, CBM, sugar binding protein; HET: CBI XGP; 2.11A {Clostridium thermocellum dsm 4150}
Probab=56.56 E-value=46 Score=25.51 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=19.8
Q ss_pred CccEEEEEeecC--CCeeEEEEEcEEEEEe
Q psy6915 75 RISSIGLSLVDQ--NNGPFQLELDYIGIEY 102 (127)
Q Consensus 75 ~I~~iG~~i~~k--q~G~F~LeI~~I~~~~ 102 (127)
...+|.|-+.+. ...+..+.||.|++..
T Consensus 143 ~~~rl~F~lG~~~~~~~~~tv~iDnVsL~~ 172 (289)
T 3k4z_A 143 DTCEFTFHLGGELAATPPYTVYLDDVSLYD 172 (289)
T ss_dssp EEEEEEEECCGGGCCSSSEEEEEEEEEEEC
T ss_pred cceEEEEECCCcccCCCceEEEEEEEEEEe
Confidence 456777777543 1247899999999983
No 9
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}
Probab=40.47 E-value=1.1e+02 Score=22.66 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=39.5
Q ss_pred CCCceEEEEEeCCCceeee-------cceecCCCCCCCccCccEEEEEeecCCCeeEEEEEcEEEEEeCCCch
Q psy6915 42 GGPYWQITKIPFSKFFLQS-------KGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHT 107 (127)
Q Consensus 42 ~~~~W~tv~iPfs~F~~t~-------rG~~~~~~~~ld~~~I~~iG~~i~~kq~G~F~LeI~~I~~~~~~~~~ 107 (127)
.++.|..+.|-.+.=..+. .-++++....++.+.+..||=+..++ +..|.-+|.++.++.++..+
T Consensus 153 ~Dg~WHklalsV~~~~VtLyvDC~~~~~~~l~~~~~i~~~G~~~lG~~~~~~-~~~f~g~lQ~l~i~~dp~~a 224 (245)
T 2uur_A 153 FDSQWHKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNP-QVSVPFELQWMLIHCDPLRP 224 (245)
T ss_dssp CSSSCEEEEEEEETTEEEEEETTEEEEEEECCCBCCCCCSSEEEEEEESSCT-TCBCCEEEEEEEEESCTTGG
T ss_pred cCCCEEEEEEEEECCEEEEEEecCcccccccCCCCccccCCEEEEEEecCCC-CCceEEEeEEEEEEcCcchh
Confidence 3457887777666544331 11223323455666666666553322 34899999999999999444
No 10
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85, glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A {Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Probab=35.32 E-value=2.1e+02 Score=24.45 Aligned_cols=42 Identities=14% Similarity=0.417 Sum_probs=31.0
Q ss_pred CceEEEEEeCCCceeeecceecCCCCCCCccCccEEEEEeecCCCeeEEEEEcEEEE
Q psy6915 44 PYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGI 100 (127)
Q Consensus 44 ~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I~~iG~~i~~kq~G~F~LeI~~I~~ 100 (127)
++|++..++++.+ .| ..|..|||.+.+..+-+|.+-|=.|.+
T Consensus 487 ~~W~~~~~~ls~~----~G-----------~~i~~I~l~~~~~~~~~y~~~lG~l~i 528 (626)
T 2vtf_A 487 NGWTQWTLPLDAF----AG-----------QTITGLAFAAEGNETGLAEFYIGQLAV 528 (626)
T ss_dssp TTEEEEEEECGGG----TT-----------CEEEEEEEEEECCTTCEEEEEEEEEEE
T ss_pred CCcEEEEEEeccc----CC-----------CEeeeEEEEEecCCCcceEEEEEEEEe
Confidence 3688888888744 22 358889998887654788888888887
No 11
>4het_A Hypothetical glycoside hydrolase; galactose-binding domain-like, xylanase, PF13201 family, STR genomics; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=31.62 E-value=1.3e+02 Score=23.85 Aligned_cols=51 Identities=24% Similarity=0.472 Sum_probs=35.6
Q ss_pred CceEEEEEeCCCceeeecceecCCCCCCCcc----CccEEEEEeecCCCeeE-------EEEEcEEEEEeCC
Q psy6915 44 PYWQITKIPFSKFFLQSKGRIQDIQNPLDTD----RISSIGLSLVDQNNGPF-------QLELDYIGIEYDP 104 (127)
Q Consensus 44 ~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~----~I~~iG~~i~~kq~G~F-------~LeI~~I~~~~~~ 104 (127)
.+|+...|||.-- -+ ...|.. .-..|.++++....|++ .|-||.|++.+++
T Consensus 299 ~~w~~f~i~~~y~----~~------k~~d~~~~~~~~y~l~Iv~SSS~~Gd~F~Ga~GStL~IDdveLiye~ 360 (360)
T 4het_A 299 DQWTDFEIPFEPV----KG------RVIDDTKLKNGKYKLGIVLSSSVDGAYFKGAVGSTLYVDEVELICED 360 (360)
T ss_dssp SSCEEEEEECEES----TT------CCCCHHHHHTTCEEEEEEEESSTTGGGTEEETTCEEEEEEEEEEECC
T ss_pred cccEEEEEeeEEe----cC------ceechhhcccCCcEEEEEEeeCCCCCceecCCCCEEEEEEEEEEecC
Confidence 3799999999421 11 223322 23578899988778875 7999999998763
No 12
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=31.60 E-value=27 Score=24.02 Aligned_cols=48 Identities=27% Similarity=0.430 Sum_probs=33.0
Q ss_pred cceEEEEEee-CCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceE-EEEEeCCCceee
Q psy6915 2 YNHLVIKCRG-DGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQ-ITKIPFSKFFLQ 59 (127)
Q Consensus 2 y~gl~lrvrG-DGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~-tv~iPfs~F~~t 59 (127)
|+++.++||| +|.-|+-.+++-. .+...-.|. + .|+ .-.+||++..+.
T Consensus 3 ~~~~~VEV~~~~G~~y~a~V~~v~------~d~~~V~f~---n-~w~~~~~vp~~~vRlp 52 (128)
T 3h8z_A 3 FQGLPVEVRGSNGAFYKGFVKDVH------EDSVTIFFE---N-NWQSERQIPFGDVRLP 52 (128)
T ss_dssp TTTCEEEEECTTSCEEEEEEEEEC------SSEEEEEET---T-CTTCCEEEEGGGEECC
T ss_pred ccccEEEEecCCCCEEEEEEEEEe------CCcEEEEEc---c-ccCcceEechhhEEcC
Confidence 6788999998 5677888885532 234444442 3 587 578899988875
No 13
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=29.34 E-value=57 Score=22.90 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=12.7
Q ss_pred eEEEEE-eeCCceEEEEEEcC
Q psy6915 4 HLVIKC-RGDGRSYMLNLHTP 23 (127)
Q Consensus 4 gl~lrv-rGDGr~Y~l~L~~~ 23 (127)
||.+|+ ....+-|.+.+...
T Consensus 84 Gi~fR~~~d~~~gY~~~i~~~ 104 (185)
T 4b1m_A 84 ALMFRSDKDAKNGYLANVDAK 104 (185)
T ss_dssp EEEEEECTTSSSEEEEEEETT
T ss_pred EEEEEEcCCCCCcEEEEEECC
Confidence 677777 43346677777654
No 14
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=28.21 E-value=83 Score=20.54 Aligned_cols=69 Identities=10% Similarity=0.140 Sum_probs=41.1
Q ss_pred ceEEEEEeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCC---CCCCccCccEE
Q psy6915 3 NHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQ---NPLDTDRISSI 79 (127)
Q Consensus 3 ~gl~lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~---~~ld~~~I~~i 79 (127)
+.|.|+|+++|+.-.+.++.++..... -..|. .. .-+|.+.+...|.|+.+.+. ..|+..+=..|
T Consensus 30 ~~I~IkV~~~g~~i~fkIk~tt~l~kL-~~ay~-----ek------~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~I 97 (106)
T 2eke_C 30 THINLKVSDGSSEIFFKIKKTTPLRRL-MEAFA-----KR------QGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 97 (106)
T ss_dssp SEEEEEEECSSCEEEEEEETTSCTHHH-HHHHH-----HH------HTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CeEEEEEecCCcEEEEEeCCCCHHHHH-HHHHH-----HH------hCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEE
Confidence 458899988999999999988865321 01221 11 11466777777888877642 23444444444
Q ss_pred EEEe
Q psy6915 80 GLSL 83 (127)
Q Consensus 80 G~~i 83 (127)
=+++
T Consensus 98 dv~~ 101 (106)
T 2eke_C 98 EAHR 101 (106)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4433
No 15
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=26.81 E-value=94 Score=19.50 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=46.0
Q ss_pred ceEEEEEee-CCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCC---CCCCccCccE
Q psy6915 3 NHLVIKCRG-DGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQ---NPLDTDRISS 78 (127)
Q Consensus 3 ~gl~lrvrG-DGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~---~~ld~~~I~~ 78 (127)
+.|.|+|++ ||+...+.++.++..... -..|. -+.+ +|.+++...|.|+.+.+. ..++..+=..
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl-~~~y~----~~~g-------i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~ 71 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKL-MKAYC----ERQG-------LSMRQIRFRFDGQPINETDTPAQLEMEDEDT 71 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHH-HHHHH----HHTT-------CCSTTEEEEETTEECCTTCCTTTTTCCTTEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHH-HHHHH----HHhC-------CCcccEEEEECCEEcCCCCCHHHcCCCCCCE
Confidence 468899997 889999999998876321 01221 1122 577888888999877642 2455556666
Q ss_pred EEEEee
Q psy6915 79 IGLSLV 84 (127)
Q Consensus 79 iG~~i~ 84 (127)
|=+++.
T Consensus 72 Idv~~~ 77 (91)
T 2io0_B 72 IDVFQQ 77 (91)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 666655
No 16
>3o12_A Uncharacterized protein YJL217W; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.50A {Saccharomyces cerevisiae}
Probab=26.80 E-value=1.8e+02 Score=21.08 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=19.5
Q ss_pred cEEEEEeecCCCeeEEEEEcEEEEE
Q psy6915 77 SSIGLSLVDQNNGPFQLELDYIGIE 101 (127)
Q Consensus 77 ~~iG~~i~~kq~G~F~LeI~~I~~~ 101 (127)
..+|+++.+.....+....+++..-
T Consensus 184 ~~vGl~a~sp~~~g~~a~Fd~F~~~ 208 (221)
T 3o12_A 184 YLVGPMACTPERGGLKVTFSEWSLT 208 (221)
T ss_dssp CEEEEEEECSSSCCCEEEEEEEEEE
T ss_pred cEEEEEEECCCCCCcEEEEEEEEEc
Confidence 4599999887666788888888764
No 17
>4emo_A Sharpin; pleckstrin homology (PH) domain, lubac, SIPL1, linear ubiqui HOIL-1L, HOIP, protein binding; 2.00A {Homo sapiens}
Probab=26.25 E-value=46 Score=22.86 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.2
Q ss_pred cCccEEEEEeecCCCeeEEEEEcE
Q psy6915 74 DRISSIGLSLVDQNNGPFQLELDY 97 (127)
Q Consensus 74 ~~I~~iG~~i~~kq~G~F~LeI~~ 97 (127)
++++++.+......+|.|+|++..
T Consensus 41 ~~l~RLQLSadp~RpG~FRL~L~g 64 (129)
T 4emo_A 41 AQLRRLQLSADPERPGRFRLELLG 64 (129)
T ss_dssp CEEEEEEEEECTTSTTCEEEEECC
T ss_pred chheeeeeccCCCCCccEEEEEec
Confidence 468999999988899999999976
No 18
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=25.74 E-value=1e+02 Score=19.42 Aligned_cols=70 Identities=11% Similarity=0.215 Sum_probs=43.3
Q ss_pred ceEEEEEee-CCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCC---CCCCccCccE
Q psy6915 3 NHLVIKCRG-DGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQ---NPLDTDRISS 78 (127)
Q Consensus 3 ~gl~lrvrG-DGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~---~~ld~~~I~~ 78 (127)
+.|.|+|++ ||+...+.++.++..... -..|. . ..-+|.+.+...|.|+.+.+. ..++..+=..
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl-~~~y~-----~------~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~ 73 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKL-MKAYC-----E------RQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDT 73 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHH-HHHHH-----H------HHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCE
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHH-HHHHH-----H------HhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCE
Confidence 458899997 888899999988876321 01221 0 111566777888889877642 2345555555
Q ss_pred EEEEee
Q psy6915 79 IGLSLV 84 (127)
Q Consensus 79 iG~~i~ 84 (127)
|=+++.
T Consensus 74 Idv~~~ 79 (94)
T 2io1_B 74 IDVFQQ 79 (94)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 555553
No 19
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=25.61 E-value=69 Score=18.39 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=31.7
Q ss_pred EEEEEeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCCCCC
Q psy6915 5 LVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPL 71 (127)
Q Consensus 5 l~lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~~l 71 (127)
+.|.|+.+|+++.+.+..+..... -+..+. +..-+|.+.....+.|+.+.+...|
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~-----LK~~i~-------~~~~i~~~~qrL~~~gk~L~d~~tL 59 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQ-----FKEAIN-------KANGIPVANQRLIYSGKILKDDQTV 59 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHH-----HHHHHH-------HHHCCCGGGEEEEETTEECCTTSBT
T ss_pred EEEEEEECCEEEEEEECCCCcHHH-----HHHHHH-------HHhCCCHHHEEEEECCeEcCCCCCH
Confidence 677888788888888765443210 000011 0112566666677889988765544
No 20
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=25.53 E-value=35 Score=24.26 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=17.9
Q ss_pred eEEEEEeeCCceEEEEEEcCCC
Q psy6915 4 HLVIKCRGDGRSYMLNLHTPGD 25 (127)
Q Consensus 4 gl~lrvrGDGr~Y~l~L~~~~~ 25 (127)
++.||||..|..|.++||+...
T Consensus 52 ~~aLRiR~~~~~~~~TlK~~~~ 73 (193)
T 2gfg_A 52 SSALRIREKEAIFTFTLKQPHP 73 (193)
T ss_dssp TCEEEEEEETTEEEEEEEEECS
T ss_pred CCEEEEEeeCCcEEEEEccCCC
Confidence 4678888888889999998764
No 21
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A
Probab=24.28 E-value=4e+02 Score=24.13 Aligned_cols=14 Identities=14% Similarity=0.416 Sum_probs=11.6
Q ss_pred CCceEEEEEeCCCc
Q psy6915 43 GPYWQITKIPFSKF 56 (127)
Q Consensus 43 ~~~W~tv~iPfs~F 56 (127)
+++|++..+++++|
T Consensus 641 ~~~Wt~~t~dLs~l 654 (937)
T 3gdb_A 641 SDNWTNEEFDLSSL 654 (937)
T ss_dssp EEEEEEEEEECGGG
T ss_pred CCCcEEEEEEcccc
Confidence 34799999999887
No 22
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=23.94 E-value=88 Score=18.38 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=34.7
Q ss_pred EEEEEee-CCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCC
Q psy6915 5 LVIKCRG-DGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDI 67 (127)
Q Consensus 5 l~lrvrG-DGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~ 67 (127)
|.|+|++ ||+...+.++.++..... -..|. -+.+ +|.+++...|.|+.+.+
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl-~~~y~----~~~g-------i~~~~~rf~fdG~~l~~ 53 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKL-MKAYC----ERQG-------LSMRQIRFRFDGQPINE 53 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHH-HHHHH----HHHT-------CCTTTCEEEETTEECCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHH-HHHHH----HHhC-------CCcceEEEEECCEEcCC
Confidence 6789997 888899999888766321 01221 0112 57788888999987764
No 23
>2w91_A Endo-beta-N-acetylglucosaminidase D; hydrolase, N-glycan, secreted, oxazoline, NAG-thiazoline, substrate-participation; 1.40A {Streptococcus pneumoniae} PDB: 2w92_A*
Probab=23.51 E-value=3.5e+02 Score=23.21 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=29.0
Q ss_pred CceEEEEEeCCCceeeecceecCCCCCCCccCccEEEEEeecCCC-eeEEEEEcEEEEEeC
Q psy6915 44 PYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNN-GPFQLELDYIGIEYD 103 (127)
Q Consensus 44 ~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I~~iG~~i~~kq~-G~F~LeI~~I~~~~~ 103 (127)
++|++.+++++.+ .-..|..|||.+.+.++ -+|.+-|=.|.....
T Consensus 491 ~~W~~~~~~ls~~---------------~G~~i~~I~l~~~~~~~~~~y~~~lG~l~i~~~ 536 (653)
T 2w91_A 491 DNWTNEEFDLSSL---------------AGKTIYAVKLFFEHEGAVKDYQFNLGQLTISDN 536 (653)
T ss_dssp EEEEEEEEECGGG---------------TTCEEEEEEEEEEESSCEEEEEEEEEEEEEESC
T ss_pred CCcEEEEEEeccc---------------CCCEeeeEEEEEeCCCCccceeEEEeeEEEeCC
Confidence 3677777776633 22357788888876543 577777777777533
No 24
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=26.64 E-value=20 Score=20.96 Aligned_cols=54 Identities=6% Similarity=0.069 Sum_probs=31.2
Q ss_pred EEEEee-CCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCCCCC
Q psy6915 6 VIKCRG-DGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPL 71 (127)
Q Consensus 6 ~lrvrG-DGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~~l 71 (127)
.|.||. +|+++.+.+..+.... .-...+. +..-+|.+.....+.|+.+++...|
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~-----~lK~~i~-------~~~gi~~~~qrL~~~gk~L~d~~tL 56 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSIL-----QLKEVVA-------KQQGVPADQLRVIFAGKELPNHLTV 56 (76)
Confidence 356665 6888888776554321 1111122 2234788888888888877654333
No 25
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=20.95 E-value=1.2e+02 Score=18.83 Aligned_cols=53 Identities=11% Similarity=0.253 Sum_probs=33.3
Q ss_pred ceEEEEEee-CCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCC
Q psy6915 3 NHLVIKCRG-DGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDI 67 (127)
Q Consensus 3 ~gl~lrvrG-DGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~ 67 (127)
+.|.|+|++ ||+...+.++.++...... ..|. . ..-+|.+.+...|.|+.+.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~-~~y~-----~------~~gi~~~~~rf~fdG~~l~~ 69 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLM-KAYC-----E------RQGLSMRQIRFRFDGQPINE 69 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHH-HHHH-----H------HHTCCGGGEEEEETTEECCT
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHH-HHHH-----H------HhCCCccceEEEECCEEcCC
Confidence 357888887 7788888888877542110 1221 0 11156677888888987764
Done!