RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6915
         (127 letters)



>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium
           thermocellum [TaxId: 1515]}
          Length = 167

 Score = 65.8 bits (160), Expect = 3e-15
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 2   YNHLVIKCR---GDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFL 58
           +  +    +   G        +       V  G+ + Y++       W+  +IPFS F  
Sbjct: 65  WLKISFDIKSVDGSANEIRFMIAEKSINGVGDGEHWVYSITPDSS--WKTIEIPFSSFRR 122

Query: 59  QS--KGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLE-LDYIG 99
           +   +   QD+   LD D I SI     +  +G F ++ +  IG
Sbjct: 123 RLDYQPPGQDMSGTLDLDNIDSIHFMYANNKSGKFVVDNIKLIG 166


>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1
           {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 196

 Score = 26.9 bits (59), Expect = 0.64
 Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 51  IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGI-EYDPNHTEE 109
           +PF  F+  +   +  ++   +      + +  V +         D + +  +D N+  +
Sbjct: 1   LPFLGFYHMANAALNRLRQQANLRDFYDVIVEEVRR-----MTGFDRVMLYRFDENNHGD 55

Query: 110 FAYE 113
              E
Sbjct: 56  VIAE 59


>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 167

 Score = 26.3 bits (57), Expect = 0.98
 Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 3/53 (5%)

Query: 1   MYNHLVIKCRGD---GRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITK 50
           +   L+ +  GD   GRS  +            G         +    W+I  
Sbjct: 72  LTTDLLYEVDGDVATGRSASVVTLATAAGYKILGSGEYQDRLIKQDGQWRIAY 124


>d3b8la1 d.17.4.28 (A:1-144) Uncharacterized protein Saro3538
           {Novosphingobium aromaticivorans [TaxId: 48935]}
          Length = 144

 Score = 26.0 bits (56), Expect = 1.3
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 1   MYNHLVIKCRGD---GRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITK 50
           + N  V    GD    R+Y++ +    D      +   +    R    W+ T+
Sbjct: 75  LTNFAVTGYEGDTASMRAYVIGMGVGKDGRAVTVNGRYFFEVRRTEKGWKATR 127


>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722
           {Novosphingobium aromaticivorans [TaxId: 48935]}
          Length = 153

 Score = 23.6 bits (50), Expect = 9.2
 Identities = 5/53 (9%), Positives = 12/53 (22%), Gaps = 3/53 (5%)

Query: 1   MYNHLVIKCRGD---GRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITK 50
                 +   GD    R + +          +         + R    W+  +
Sbjct: 83  FLGPATVTVEGDTATARCHSVVFRCVSGTFGSHRVSANRWTFRRTPAGWRAVR 135


>d7ahla_ f.6.1.1 (A:) Alpha-hemolysin {Staphylococcus aureus [TaxId:
           1280]}
          Length = 293

 Score = 23.7 bits (51), Expect = 9.5
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 15  SYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGR---IQDIQNPL 71
            +   L +P D  V W  +F   +    GPY + +  P     L  K R   ++   N L
Sbjct: 152 DFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFL 211

Query: 72  DTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEE 109
           D ++ SS+        +  F  +   + I  D   +++
Sbjct: 212 DPNKASSLL-------SSGFSPDFATV-ITMDRKASKQ 241


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.143    0.458 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 509,477
Number of extensions: 21908
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 14
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.3 bits)