BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6916
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Query: 10 MLITYNSGKLKVDQGNTLTPSDLKQAP-EVTWNA-DSSSYYTLVMTDPDAPSRQNPKARE 67
+ +TY +G + G LTP+ +K P ++W+ DS YTLV+TDPDAPSR++PK RE
Sbjct: 25 LHVTY-AGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYRE 83
Query: 68 WRHWLVVNIPGSQISRGQTITPYAGPTPPKGTGTY 102
W H+LVVN+ G+ IS G ++ Y G PPKGTG +
Sbjct: 84 WHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLH 118
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Query: 17 GKLKVDQ-GNTLTPSDLKQAP-EVTWNA-DSSSYYTLVMTDPDAPSRQNPKAREWRHWLV 73
G +VD+ G LTP+ +K P +TW+ D YTLV+TDPDAPSR++PK REW H+LV
Sbjct: 29 GGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYREWHHFLV 88
Query: 74 VNIPGSQISRGQTITPYAGPTPPKGTGTY 102
VN+ G+ IS G ++ Y G PPKGTG +
Sbjct: 89 VNMKGNNISSGTVLSDYVGSGPPKGTGLH 117
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Query: 17 GKLKVDQ-GNTLTPSDLKQAP-EVTWNA-DSSSYYTLVMTDPDAPSRQNPKAREWRHWLV 73
G +VD+ G LTP+ +K P +TW+ D YTLV+TDPDAPSR++PK REW H+LV
Sbjct: 29 GGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYREWHHFLV 88
Query: 74 VNIPGSQISRGQTITPYAGPTPPKGTGTY 102
VN+ G+ IS G ++ Y G PPKGTG +
Sbjct: 89 VNMKGNNISSGTVLSDYVGSGPPKGTGLH 117
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Query: 10 MLITYNSGKLKVDQGNTLTPSDLKQAP-EVTWNA-DSSSYYTLVMTDPDAPSRQNPKARE 67
+ +TY +++ + G LTP+ +K P ++W+ D YTL++TDPDAPSR+ P RE
Sbjct: 21 LRVTYTEAEVE-ELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPSRKKPVYRE 79
Query: 68 WRHWLVVNIPGSQISRGQTITPYAGPTPPKGTGTY 102
W H+LVVN+ G+ IS G ++ Y G PPKGTG +
Sbjct: 80 WHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLH 114
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 65/106 (61%), Gaps = 5/106 (4%)
Query: 1 MVGLVANGSMLITYNSGKLKVDQGNTLTPSDLKQAPEVTWNA--DSSSYYTLVMTDPDAP 58
++ V G++ + Y L+V QGN LTP+ +K P V+W+ S+ TL+M DPDAP
Sbjct: 8 VLDAVPAGTIKVIYGD-DLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPDAP 66
Query: 59 SRQNPKAREWRHWLVVNIPGSQI--SRGQTITPYAGPTPPKGTGTY 102
+RQ+PK RE HW VVNIPGS S G ++ Y G PPK TG +
Sbjct: 67 TRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLH 112
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 12 ITYNSGKLKVDQ-GNTLTPSDLKQAPE-VTWNA-DSSSYYTLVMTDPDAPSRQNPKAREW 68
+ + G + VD+ G LTP+ + P ++W+ D YTLV+TDPDAPSR++PK REW
Sbjct: 28 LRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREW 87
Query: 69 RHWLVVNIPGSQISRGQTITPYAGPTPPKGTGTY 102
H+LVVN+ G+ IS G ++ Y G PPK TG +
Sbjct: 88 HHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLH 121
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 12 ITYNSGKLKVDQ-GNTLTPSDLKQAPE-VTWNA-DSSSYYTLVMTDPDAPSRQNPKAREW 68
+ + G + VD+ G LTP+ + P ++W+ D YTLV+TDPDAPSR++PK REW
Sbjct: 25 LRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREW 84
Query: 69 RHWLVVNIPGSQISRGQTITPYAGPTPPKGTGTY 102
H+LVVN+ G+ IS G ++ Y G PPK TG +
Sbjct: 85 HHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLH 118
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 3 GLVANGSMLITYNSGKLKVDQGNTLTPSDLKQAPEVTWNA-DSSSYYTLVMTDPDAPSRQ 61
V + ++ +TY G V G L PS + P V D ++YTLVM DPDAPS
Sbjct: 23 AFVRSTNLKVTY--GSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSPS 80
Query: 62 NPKAREWRHWLVVNIPG-SQISRGQTITPYAGPTPPKG 98
+P RE+ HWLV +IPG + S GQ + Y P P G
Sbjct: 81 DPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMG 118
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 7 NGSMLITYNSGKLKVDQGNTLTPSDLKQAPEVTWNA-DSSSYYTLVMTDPDAPSRQNPKA 65
N S+ + G+ +V G L PS ++ P V D ++YTLVM DPD PS NP
Sbjct: 26 NRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHL 85
Query: 66 REWRHWLVVNIPGSQ-ISRGQTITPYAGPTPPKG 98
RE+ HWLV +IP + + G I Y P+P G
Sbjct: 86 REYLHWLVTDIPATTGTTFGNEIVSYENPSPTAG 119
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 10 MLITYNSGKLKVDQGNTLTPSDLKQAPEVTWNA-DSSSYYTLVMTDPDAPSRQNPKAREW 68
M ++YN K +V G+ L PS + P V + D S++TLVM DPD P +P +E
Sbjct: 34 MNVSYN--KKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEH 91
Query: 69 RHWLVVNIPG-SQISRGQTITPYAGPTPPKGTGTYI 103
HW+V NIPG + + G+ + Y P P G ++
Sbjct: 92 LHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFV 127
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 10 MLITYNSGK--LKVDQGNTLTPSDLKQAPEVTWNA-DSSSYYTLVMTDPDAPSRQNPKAR 66
M + YNS V G+ L PS + P V + D S++TL+MTDPD P +P R
Sbjct: 29 MSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDVPGPSDPYLR 88
Query: 67 EWRHWLVVNIPG-SQISRGQTITPYAGPTPPKGTGTYI 103
E HW+V +IPG + S G+ + Y P P G ++
Sbjct: 89 EHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFV 126
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 7 NGSMLITYNSGKLKVDQGNTLTPSDLKQAPE-VTWNAD--SSSYYTLVMTDPDAPSRQNP 63
N + I++ +GK +V+ GN L + P + ++ + + L M DPD PSR P
Sbjct: 43 NVDLFISFKAGK-EVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMVDPDYPSRLRP 101
Query: 64 KAREWRHWLVVNIPGSQISRGQ-----TITPYAGPTPPKGTGTY 102
+E+ HW+V I ++ +G TI PY GP+ KGTG +
Sbjct: 102 DGKEYIHWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLH 145
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query: 12 ITYNSGKLKVDQGNTLTPSDLKQAPEVTWNADSSS------YYTLVMTDPDAPSRQNPKA 65
I++ SGK +V+ GN L DL V N S Y L DPD PSR+ P
Sbjct: 41 ISFKSGK-EVNHGNIL---DLAGTGSVPRNIKFSEEPPEDYCYILFXIDPDFPSRRRPDG 96
Query: 66 REWRHWLVVNIPGSQISRGQ-----TITPYAGPTPPKGTGTY 102
R++ HW V I ++ +G T+ PY GP+ KGTG +
Sbjct: 97 RDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLH 138
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 32/108 (29%)
Query: 12 ITYNSGKLK-VDQGNTLTPSDLKQAPEVTWNADSSSYYTLVMTDPDAPSRQNPKAREWRH 70
T+N K V Q N P D +TLVMTDPDAPS+ + K E+ H
Sbjct: 66 FTFNKQMQKSVPQANAYVPQD-------------DDLFTLVMTDPDAPSKTDHKWSEFCH 112
Query: 71 WLVVNIP----------------GSQISR--GQTITPYAGPTPPKGTG 100
+ ++ S+ + T+ Y GP PPKG+G
Sbjct: 113 LVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSG 160
>pdb|1FUX|A Chain A, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
pdb|1FUX|B Chain B, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
Length = 166
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 35 APEVTWNA--DSSSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGS 79
+P +TW+ + + + + + DPDAP+ W HW VVNIP +
Sbjct: 33 SPSLTWSGVPEGTKSFAVTVYDPDAPTGSG-----WWHWTVVNIPAT 74
>pdb|1VI3|A Chain A, Crystal Structure Of An Hypothetical Protein
Length = 170
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 35 APEVTWNADSSSYYTLVMT--DPDAPSRQNPKAREWRHWLVVNIP 77
+P + W+ + + V+T DPDAP+ W HW+VVN+P
Sbjct: 33 SPHLAWDDVPAGTKSFVVTCYDPDAPTGSG-----WWHWVVVNLP 72
>pdb|1FJJ|A Chain A, Crystal Structure Of E.Coli Ybhb Protein, A New Member
Of The Mammalian Pebp Family
Length = 159
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 35 APEVTWNADSSSYYTLVMT--DPDAPSRQNPKAREWRHWLVVNIP 77
+P + W+ + + V+T DPDAP+ W HW+VVN+P
Sbjct: 32 SPHLAWDDVPAGTKSFVVTCYDPDAPTGSG-----WWHWVVVNLP 71
>pdb|1O2D|A Chain A, Crystal Structure Of Alcohol Dehydrogenase,
Iron-Containing (Tm0920) From Thermotoga Maritima At
1.30 A Resolution
pdb|1O2D|B Chain B, Crystal Structure Of Alcohol Dehydrogenase,
Iron-Containing (Tm0920) From Thermotoga Maritima At
1.30 A Resolution
Length = 371
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 69 RHWL-VVNIPGSQISRGQTITPYAGPTPPKG 98
+HWL VV IP + G +TPY+ T P+G
Sbjct: 138 KHWLPVVEIP-TTAGTGSEVTPYSILTDPEG 167
>pdb|1VHD|A Chain A, Crystal Structure Of An Iron Containing Alcohol
Dehydrogenase
pdb|1VHD|B Chain B, Crystal Structure Of An Iron Containing Alcohol
Dehydrogenase
Length = 371
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 69 RHWL-VVNIPGSQISRGQTITPYAGPTPPKG 98
+HWL VV IP + G +TPY+ T P+G
Sbjct: 128 KHWLPVVEIP-TTAGTGSEVTPYSILTDPEG 157
>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Atp
pdb|3LDL|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Atp
pdb|3LDN|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Apo Form
pdb|3LDN|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Apo Form
pdb|3LDO|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDO|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDP|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Small
Molecule Inhibitor
pdb|3LDP|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Small
Molecule Inhibitor
Length = 384
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 2 VGLVANGSMLITYNSGKLKVDQGNTLTPSDLKQAPE 37
VG+ NG + I N DQGN +TPS + PE
Sbjct: 19 VGVFKNGRVEIIAN------DQGNRITPSYVAFTPE 48
>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
pdb|3IUC|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein
5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
Length = 408
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 2 VGLVANGSMLITYNSGKLKVDQGNTLTPSDLKQAPE 37
VG+ NG + I N DQGN +TPS + PE
Sbjct: 40 VGVFKNGRVEIIAN------DQGNRITPSYVAFTPE 69
>pdb|3AMR|A Chain A, Crystal Structures Of Bacillus Subtilis Alkaline Phytase
In Complex With Ca2+, Co2+, Ni2+, Mg2+ And Myo-Inositol
Hexasulfate
pdb|3AMS|A Chain A, Crystal Structures Of Bacillus Subtilis Alkaline Phytase
In Complex With Ca2+, Cd2+, Co2+, Ni2+, Mg2+ And
Myo-Inositol Hexasulfate
Length = 355
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 18/73 (24%)
Query: 3 GLVA---NGSMLITYNSGKL--------------KVDQGNTLTPSDLKQAPEVTWNADSS 45
GLV +G ML +YN+GKL KVD S+ K E+ + D
Sbjct: 51 GLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEI-YAIDGK 109
Query: 46 SYYTLVMTDPDAP 58
+ MTDPD P
Sbjct: 110 NGTLQSMTDPDHP 122
>pdb|1DTD|A Chain A, Crystal Structure Of The Complex Between The Leech
Carboxypeptidase Inhibitor And The Human
Carboxypeptidase A2 (Lci-Cpa2)
Length = 303
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 30 SDLKQAPEVTWNADSSSYYTLVMTDPDAPSRQNPKAREWR 69
SD + P +T D+ + L +T+PD K R WR
Sbjct: 81 SDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKNRMWR 120
>pdb|1KEH|A Chain A, Precursor Structure Of Cephalosporin Acylase
Length = 689
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 20 KVDQGNTLTPSDLKQAPEVTWNADSSSYYTLVMTDPD 56
K GN L L Q P ++W D +YY + PD
Sbjct: 179 KTANGNAL----LLQNPHLSWTTDYFTYYEAHLVTPD 211
>pdb|1AYE|A Chain A, Human Procarboxypeptidase A2
Length = 401
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 30 SDLKQAPEVTWNADSSSYYTLVMTDPDAPSRQNPKAREWR 69
SD + P +T D+ + L +T+PD K R WR
Sbjct: 180 SDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKNRMWR 219
>pdb|1FM2|B Chain B, The 2 Angstrom Crystal Structure Of Cephalosporin
Acylase
pdb|1JVZ|B Chain B, Structure Of Cephalosporin Acylase In Complex With
Glutaryl- 7-Aminocephalosporanic Acid
pdb|1JW0|B Chain B, Structure Of Cephalosporin Acylase In Complex With
Glutarate
Length = 520
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 20 KVDQGNTLTPSDLKQAPEVTWNADSSSYYTLVMTDPD 56
K GN L L Q P ++W D +YY + PD
Sbjct: 10 KTANGNAL----LLQNPHLSWTTDYFTYYEAHLVTPD 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,814,021
Number of Sequences: 62578
Number of extensions: 148760
Number of successful extensions: 216
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 41
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)