Query psy6916
Match_columns 105
No_of_seqs 102 out of 1053
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 21:43:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gzq_A Phosphatidylethanolamin 100.0 2.8E-32 9.5E-37 190.6 8.3 102 2-104 31-140 (200)
2 2jyz_A CG7054-PA, GH14779P, PE 100.0 5.3E-32 1.8E-36 186.4 6.3 99 5-104 12-114 (179)
3 2iqy_A Phosphatidylethanolamin 100.0 1.5E-31 5.1E-36 185.6 7.7 100 4-104 22-123 (190)
4 3axy_A Protein heading DATE 3A 100.0 4.1E-31 1.4E-35 180.7 9.2 100 1-104 21-122 (170)
5 1wko_A Terminal flower 1 prote 100.0 1.2E-30 4E-35 179.8 10.0 100 1-104 25-126 (180)
6 1wpx_B Carboxypeptidase Y inhi 100.0 4.1E-29 1.4E-33 176.6 10.9 102 3-105 30-165 (220)
7 1fux_A Hypothetical 19.5 kDa p 99.9 7.9E-24 2.7E-28 144.1 7.8 83 18-105 7-121 (166)
8 3n08_A Putative phosphatidylet 99.9 8.2E-22 2.8E-26 132.6 7.4 84 19-105 9-111 (153)
9 1fjj_A Hypothetical 17.1 kDa p 99.8 2.3E-21 7.7E-26 131.1 7.3 82 18-105 6-118 (159)
10 2evv_A Hypothetical protein HP 99.7 3.7E-18 1.3E-22 119.6 3.4 80 21-105 32-159 (207)
11 1ffk_I Ribosomal protein L15E; 43.9 14 0.00047 25.2 2.3 38 34-74 108-152 (194)
12 3jyw_L 60S ribosomal protein L 34.6 26 0.00089 23.8 2.5 39 34-75 108-153 (192)
13 2hjj_A Hypothetical protein YK 33.0 63 0.0022 19.0 3.7 35 35-79 24-58 (87)
14 4a17_L RPL15, ribosomal protei 28.6 30 0.001 23.7 2.0 27 34-60 109-142 (204)
15 3j21_M 50S ribosomal protein L 24.9 30 0.001 23.5 1.5 27 34-60 107-140 (194)
16 3iz5_P 60S ribosomal protein L 21.7 29 0.001 23.7 0.9 39 34-75 109-154 (204)
17 2ccl_A Cellulosomal scaffoldin 20.2 1.3E+02 0.0045 19.4 3.8 46 8-55 38-87 (158)
No 1
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A
Probab=99.97 E-value=2.8e-32 Score=190.63 Aligned_cols=102 Identities=31% Similarity=0.613 Sum_probs=93.1
Q ss_pred CCCccceeEEEEEcCCCeeecCCCccCchhhccCCe-EEEEcCC--CCeeEEEEeCCCCCCCCCCCCceeeEEEEEccCC
Q psy6916 2 VGLVANGSMLITYNSGKLKVDQGNTLTPSDLKQAPE-VTWNADS--SSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPG 78 (105)
Q Consensus 2 ~~f~P~~~L~v~y~~~~~~v~~G~~l~~~~t~~~P~-i~~~~~~--~~~ytlimvDpD~p~~~~~~~~~~lHwl~~ni~~ 78 (105)
+.|+|++.|+|+| +++..|.+|+.|++++++.+|+ |+|.+.+ .++|||+|+|||||++.++++++|+|||++||++
T Consensus 31 ~~f~p~~~L~V~y-~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~~ytLvm~DPDaP~~~~~~~~~~~HWlv~nIp~ 109 (200)
T 2gzq_A 31 ENVDLTVDMYISF-KSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFMIDPDFPSRRRPDGRDYVHWAVSGIKS 109 (200)
T ss_dssp SCCCCCCCEEEEE-ETTEEECSSCEEESTTCSSCCSEEEESSCCCTTEEEEEEEEETTCSCSSCCTTCSEEEEEEEEECS
T ss_pred CCCcceeEEEEEE-CCCcccCCCCEeCHHHHhCCCceEEEccCCCCCceEEEEEECCCCCCCCCCCCCCEEEEEEeCCCc
Confidence 4599999999999 4478999999999999999998 9998754 5899999999999999999999999999999999
Q ss_pred CCCCCCc-----ccccccCCCCCCCCCCCcC
Q psy6916 79 SQISRGQ-----TITPYAGPTPPKGTGTYIQ 104 (105)
Q Consensus 79 ~~~~~g~-----~~~~Y~~P~Pp~gtg~HRy 104 (105)
+.+..|. .+++|.||+||+|+|+|||
T Consensus 110 ~~~~~g~~~~~~~~~~Y~gP~Pp~g~g~HRY 140 (200)
T 2gzq_A 110 KELVKGTDKNCITLLPYVGPSIKKGTGLHRI 140 (200)
T ss_dssp SEEETTCCTTCEEEECCCCCCCCTTSCCEEE
T ss_pred CcccCCccCCCcceeeeeCCCCcCCCCcceE
Confidence 8765554 7899999999999999999
No 2
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster}
Probab=99.97 E-value=5.3e-32 Score=186.37 Aligned_cols=99 Identities=47% Similarity=0.835 Sum_probs=93.2
Q ss_pred ccceeEEEEEcCCCeeecCCCccCchhhccCCeEEEEcCCC--CeeEEEEeCCCCCCCCCCCCceeeEEEEEccCCC--C
Q psy6916 5 VANGSMLITYNSGKLKVDQGNTLTPSDLKQAPEVTWNADSS--SYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGS--Q 80 (105)
Q Consensus 5 ~P~~~L~v~y~~~~~~v~~G~~l~~~~t~~~P~i~~~~~~~--~~ytlimvDpD~p~~~~~~~~~~lHwl~~ni~~~--~ 80 (105)
.|++.|+|+| +++..|.+|+.|++++++.+|+|+|.+.++ ++|||+|+|||||+++++++++|+|||++||+++ +
T Consensus 12 ~P~~~l~V~y-~~~~~v~~G~~l~~~~~~~~P~l~~~~~p~~t~~ytlvm~DpDaP~~~~p~~~~~~HWlv~nIp~~~~~ 90 (179)
T 2jyz_A 12 VPAGTIKVIY-GDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPDAPTRQDPKYREILHWSVVNIPGSNEN 90 (179)
T ss_dssp CCSEECEEES-SSSCCBCTTEECCSSCTTSCCEEECTTTCCSCSEEEEEEECCCSSCTTCCSSCCCSCCEEECCCTTSSS
T ss_pred CCcCeEEEEE-CCCcccCCCCEeCHHHhccCCeEEEeCCCCCceeEEEEEeCCCCCCCccCCCccEEEEEEECCCCCccc
Confidence 8999999999 456789999999999999999999988765 9999999999999999999999999999999988 7
Q ss_pred CCCCcccccccCCCCCCCCCCCcC
Q psy6916 81 ISRGQTITPYAGPTPPKGTGTYIQ 104 (105)
Q Consensus 81 ~~~g~~~~~Y~~P~Pp~gtg~HRy 104 (105)
+..|..++.|.||+||+|+|+|||
T Consensus 91 l~~g~~~~~Y~gP~Pp~g~g~HRY 114 (179)
T 2jyz_A 91 PSGGHSLADYVGSGPPKDTGLHRY 114 (179)
T ss_dssp TTSSEEEECCCSCCSCGGGCSEEE
T ss_pred cCcccccccccCCCCCCCCCceEE
Confidence 888999999999999999999999
No 3
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Probab=99.97 E-value=1.5e-31 Score=185.64 Aligned_cols=100 Identities=41% Similarity=0.786 Sum_probs=94.5
Q ss_pred CccceeEEEEEcCCCeeecCCCccCchhhccCCe-EEEEcCC-CCeeEEEEeCCCCCCCCCCCCceeeEEEEEccCCCCC
Q psy6916 4 LVANGSMLITYNSGKLKVDQGNTLTPSDLKQAPE-VTWNADS-SSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGSQI 81 (105)
Q Consensus 4 f~P~~~L~v~y~~~~~~v~~G~~l~~~~t~~~P~-i~~~~~~-~~~ytlimvDpD~p~~~~~~~~~~lHwl~~ni~~~~~ 81 (105)
+.|+..|+|+| +++..|.+|+.|++++|+..|+ |+|.+.+ +++|||+|+|||+|++.++++++|+|||++||+++++
T Consensus 22 ~~p~~~l~v~~-~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~ytlvm~DpDaP~~~~p~~~~~~HWlv~nIp~~~~ 100 (190)
T 2iqy_A 22 EPPQHALRVDY-GGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKGNDI 100 (190)
T ss_dssp SCCSEECEEEC-SSCBCCSTTEECCGGGGSSCCSEEECTTCCTTSEEEEEEEESSSSCSSSCTTCCEEEEEEEEEETTBG
T ss_pred CCCCceEEEEE-CCCcccCCCCEECHHHHhCCCceEEEccCCCCCEEEEEEECCCCCCCCCCCcCCEEEEEEeCCChhcc
Confidence 48999999999 5678899999999999999999 9998865 6999999999999999999999999999999999988
Q ss_pred CCCcccccccCCCCCCCCCCCcC
Q psy6916 82 SRGQTITPYAGPTPPKGTGTYIQ 104 (105)
Q Consensus 82 ~~g~~~~~Y~~P~Pp~gtg~HRy 104 (105)
..|..++.|.||+||+|+|+|||
T Consensus 101 ~~G~~~~~Y~gP~Pp~g~g~HRY 123 (190)
T 2iqy_A 101 SSGTVLSEYVGSGPPKDTGLHRY 123 (190)
T ss_dssp GGSEEEECCCCCCCCTTSCCEEE
T ss_pred ccCccccceeCCCCcCCCCceEE
Confidence 89999999999999999999999
No 4
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=99.97 E-value=4.1e-31 Score=180.71 Aligned_cols=100 Identities=39% Similarity=0.725 Sum_probs=92.1
Q ss_pred CCCCccceeEEEEEcCCCeeecCCCccCchhhccCCeEEEEcCC-CCeeEEEEeCCCCCCCCCCCCceeeEEEEEccCCC
Q psy6916 1 MVGLVANGSMLITYNSGKLKVDQGNTLTPSDLKQAPEVTWNADS-SSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGS 79 (105)
Q Consensus 1 ~~~f~P~~~L~v~y~~~~~~v~~G~~l~~~~t~~~P~i~~~~~~-~~~ytlimvDpD~p~~~~~~~~~~lHwl~~ni~~~ 79 (105)
++.|.|++.|+|+| ++..|.+|+.|++++|..+|+|+|.+.+ +++|||+|+|||+|+++++++++|+|||++||+++
T Consensus 21 l~~F~P~~~l~v~y--~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DpDaP~~~~p~~~~~~HWlv~nIp~~ 98 (170)
T 3axy_A 21 LDAFVRSTNLKVTY--GSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGT 98 (170)
T ss_dssp BCCCCCCSCEEEEE--TTEECCTTEECCGGGSSSCCEEEECCSCTTCEEEEEEEETTCSCTTSCTTCSEEEEEEEEEETT
T ss_pred cCCcCCceEEEEEE--CCeEcCCCCEeCHHHhCcCCeEEEeCCCCCcEEEEEEECCCCCCCccCCCccEEEEEEeCCCCC
Confidence 36799999999999 6789999999999999999999998865 69999999999999999999999999999999998
Q ss_pred -CCCCCcccccccCCCCCCCCCCCcC
Q psy6916 80 -QISRGQTITPYAGPTPPKGTGTYIQ 104 (105)
Q Consensus 80 -~~~~g~~~~~Y~~P~Pp~gtg~HRy 104 (105)
....|+.++.|.||+|| +|.|||
T Consensus 99 ~~~~~G~~~~~Y~gP~Pp--~G~HRY 122 (170)
T 3axy_A 99 TAASFGQEVMSYESPRPT--MGIHRL 122 (170)
T ss_dssp SBGGGSEEEECCCCCCCC--SSCEEE
T ss_pred ccccCCceeceecCCCCC--CCcEEE
Confidence 45678889999999999 558999
No 5
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A
Probab=99.97 E-value=1.2e-30 Score=179.84 Aligned_cols=100 Identities=33% Similarity=0.620 Sum_probs=91.3
Q ss_pred CCCCccceeEEEEEcCCCeeecCCCccCchhhccCCeEEEEcCC-CCeeEEEEeCCCCCCCCCCCCceeeEEEEEccCCC
Q psy6916 1 MVGLVANGSMLITYNSGKLKVDQGNTLTPSDLKQAPEVTWNADS-SSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGS 79 (105)
Q Consensus 1 ~~~f~P~~~L~v~y~~~~~~v~~G~~l~~~~t~~~P~i~~~~~~-~~~ytlimvDpD~p~~~~~~~~~~lHwl~~ni~~~ 79 (105)
++.|.|++.|+|+| ++..|.+|+.|++++++.+|+|+|.+.+ +++|||+|+|||+|+++++++++|+|||++||+++
T Consensus 25 l~~f~P~~~l~V~y--~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DPDaP~~~~p~~~~~~HWlv~nIp~~ 102 (180)
T 1wko_A 25 LDFFTPTTKMNVSY--NKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGT 102 (180)
T ss_dssp BCCCCCCSEEEEEE--TTEECCTTCBCCGGGGSSCCEEEEESSCTTCEEEEEEEECSCSBTTBCTTCCEEEEEEEEEETT
T ss_pred cCCcCCCeeEEEEE--CCeEcCCCCCcCHHHhCcCCeEEEecCCCCceEEEEEeCCCCCCCccCCCccEEEEEEeccCcC
Confidence 35799999999999 6789999999999999999999999865 67999999999999999999999999999999998
Q ss_pred C-CCCCcccccccCCCCCCCCCCCcC
Q psy6916 80 Q-ISRGQTITPYAGPTPPKGTGTYIQ 104 (105)
Q Consensus 80 ~-~~~g~~~~~Y~~P~Pp~gtg~HRy 104 (105)
. ...|.++++|.||+|+ +|.|||
T Consensus 103 ~~~~~G~~~~~Y~gP~Pp--~G~HRY 126 (180)
T 1wko_A 103 TDATFGKEVVSYELPRPS--IGIHRF 126 (180)
T ss_dssp SBGGGSEEEECCCCCCCC--SSCEEE
T ss_pred ccccCCceeeeeCCCCCC--CCceEE
Confidence 4 3568999999999998 568999
No 6
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Probab=99.96 E-value=4.1e-29 Score=176.58 Aligned_cols=102 Identities=32% Similarity=0.589 Sum_probs=89.2
Q ss_pred CCccceeEEEEEcCCCeeecCCCccCchhhccCCeEEEEc----------------CCCCeeEEEEeCCCCCCCCCCCCc
Q psy6916 3 GLVANGSMLITYNSGKLKVDQGNTLTPSDLKQAPEVTWNA----------------DSSSYYTLVMTDPDAPSRQNPKAR 66 (105)
Q Consensus 3 ~f~P~~~L~v~y~~~~~~v~~G~~l~~~~t~~~P~i~~~~----------------~~~~~ytlimvDpD~p~~~~~~~~ 66 (105)
+|.|++.|+|+| +++..|.+|+.|++++|+..|.|+|.. ...++|+|+|+|||||.+.+++++
T Consensus 30 ~F~P~~~L~V~y-~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~~~~~~~~~~p~~~~~~~lvm~DpDaP~~~~p~~~ 108 (220)
T 1wpx_B 30 SFQPSGILAVEY-SSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMTDPDAPSKTDHKWS 108 (220)
T ss_dssp TCCCSEEEEEEE-ETTEEECSSCBCCGGGGSSCCEEEEEEETTCC------CCCCCCSSCCEEEEEEESSSSCSSCCTTC
T ss_pred CCCCceEEEEEE-CCCcEeCCCCCcCHHHhcCCCeeEeCCCCCcccccccccccCCCCCceEEEEEECCCCCCCCCCCcC
Confidence 499999999999 455779999999999999999999982 235899999999999999999999
Q ss_pred eeeEEEEEccCCCC--C---------------CCC-cccccccCCCCCCCCCCCcCC
Q psy6916 67 EWRHWLVVNIPGSQ--I---------------SRG-QTITPYAGPTPPKGTGTYIQE 105 (105)
Q Consensus 67 ~~lHwl~~ni~~~~--~---------------~~g-~~~~~Y~~P~Pp~gtg~HRy~ 105 (105)
+|+||+++||+++. + ..| .....|.||+||+|+|+|||.
T Consensus 109 ~~~HW~v~nIp~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~Y~gP~Pp~g~g~HRY~ 165 (220)
T 1wpx_B 109 EFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYV 165 (220)
T ss_dssp SEEEEEEEEEEECC---------CCEEEEEEECTTCEEEECCCCCCCCTTSCCEEEE
T ss_pred cEEEEEEEccCCCccccccccCCCCccceEeecCCccccccccCCCCccCCCCceEE
Confidence 99999999999752 1 134 578999999999999999993
No 7
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2
Probab=99.90 E-value=7.9e-24 Score=144.11 Aligned_cols=83 Identities=30% Similarity=0.647 Sum_probs=70.2
Q ss_pred CeeecCCCccCchhhcc---------CCeEEEEcCC--CCeeEEEEeCCCCCCCCCCCCceeeEEEEEccCCC--CCCCC
Q psy6916 18 KLKVDQGNTLTPSDLKQ---------APEVTWNADS--SSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGS--QISRG 84 (105)
Q Consensus 18 ~~~v~~G~~l~~~~t~~---------~P~i~~~~~~--~~~ytlimvDpD~p~~~~~~~~~~lHwl~~ni~~~--~~~~g 84 (105)
+..|..|+.|+.++++. +|.|+|.+.+ .++|+|+|+|||||.. ++|+||+++||+++ .+..|
T Consensus 7 S~~~~~g~~ip~~~~~~~~~~~G~n~sP~l~w~~~P~~t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~g 81 (166)
T 1fux_A 7 SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTG-----SGWWHWTVVNIPATVTYLPVD 81 (166)
T ss_dssp CSSCCTTSBCCGGGBCEETTEECCCCCCCEEEECCCTTCCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECTT
T ss_pred ccCcCCcCCCCHHHhccccccCCCCcCCeEEEeCCCCCCeEEEEEEECCCCCCC-----CcEEEeEEeCcCCCcccccCC
Confidence 45788999999999876 9999999865 4999999999999964 58999999999976 33332
Q ss_pred c-------------------ccccccCCCCCCCCCCCcCC
Q psy6916 85 Q-------------------TITPYAGPTPPKGTGTYIQE 105 (105)
Q Consensus 85 ~-------------------~~~~Y~~P~Pp~gtg~HRy~ 105 (105)
. ....|.||+||+|+|+|||.
T Consensus 82 ~~~~~~~~l~~g~~~g~nd~g~~~Y~GP~PP~g~g~HRY~ 121 (166)
T 1fux_A 82 AGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQ 121 (166)
T ss_dssp TTCTTCTTSCTTCEECCCTTSSSSCCCBCCCTTCCCEECE
T ss_pred ccccccccCCCCcEEeecCCCCccccCCCCcCCCCcEEEE
Confidence 1 37899999999999999993
No 8
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=99.86 E-value=8.2e-22 Score=132.58 Aligned_cols=84 Identities=21% Similarity=0.439 Sum_probs=70.1
Q ss_pred eeecCCCccCchhhcc----CCeEEEEcCC--CCeeEEEEeCCCCCCCCCCCCceeeEEEEEccCCC--CCCCCc-----
Q psy6916 19 LKVDQGNTLTPSDLKQ----APEVTWNADS--SSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGS--QISRGQ----- 85 (105)
Q Consensus 19 ~~v~~G~~l~~~~t~~----~P~i~~~~~~--~~~ytlimvDpD~p~~~~~~~~~~lHwl~~ni~~~--~~~~g~----- 85 (105)
..+..|..|+.+.++. +|.|+|.+.+ .++|+|+|+|||||++.++. ++|+||+++||+++ .+..|.
T Consensus 9 ~~f~~g~~ip~~~t~~G~n~SP~l~w~~~P~~tks~ali~~DpDAPs~~~~~-~~~~HWvv~nIp~~~~~l~~g~~~g~~ 87 (153)
T 3n08_A 9 QAFSYGRPIPKKYSCQGVGISPPLSFSDVPREAKSLVLIVEDPDVPPSVRED-GLWIHWIVYNLSPVVSNLAEGAQIFAV 87 (153)
T ss_dssp TTBCTTEECCGGGSTTSCCCCCCEEEECCCTTCCEEEEEEEETTSCTTTCTT-SCEEEEEEEEECTTCCEECTTCCCSSE
T ss_pred CCcCCCCCCCHHHcCCCCCcCcEEEEcCCCCCCeEEEEEEECCCCCCccCCC-CcEEEEEEEcCCCCcccccCCCCCCce
Confidence 4678999999998773 9999999865 48999999999999887653 79999999999986 343332
Q ss_pred ------ccccccCCCCCCCCCCCcCC
Q psy6916 86 ------TITPYAGPTPPKGTGTYIQE 105 (105)
Q Consensus 86 ------~~~~Y~~P~Pp~gtg~HRy~ 105 (105)
....|.||+||+|+ |||.
T Consensus 88 ~g~n~~g~~~Y~GP~PP~g~--HrY~ 111 (153)
T 3n08_A 88 QGLNTAGEIGYCPPCPPDAK--HRYY 111 (153)
T ss_dssp ECBCTTSSBSCCCCCCSSSC--EEEE
T ss_pred EeecCCCCccccCCcCcCCC--EEEE
Confidence 46899999999998 9993
No 9
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Probab=99.84 E-value=2.3e-21 Score=131.15 Aligned_cols=82 Identities=30% Similarity=0.652 Sum_probs=66.5
Q ss_pred CeeecCCCccCchhh-----c----cCCeEEEEcCC--CCeeEEEEeCCCCCCCCCCCCceeeEEEEEccCCC--CCCCC
Q psy6916 18 KLKVDQGNTLTPSDL-----K----QAPEVTWNADS--SSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGS--QISRG 84 (105)
Q Consensus 18 ~~~v~~G~~l~~~~t-----~----~~P~i~~~~~~--~~~ytlimvDpD~p~~~~~~~~~~lHwl~~ni~~~--~~~~g 84 (105)
+..+..|..|+.+.+ + .+|.|+|.+.+ .++|+|+|+|||||.. ++|+||+++||+++ ++..|
T Consensus 6 S~~f~~g~~ip~~~~~~~~~~~G~n~sP~l~w~~~P~~t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~g 80 (159)
T 1fjj_A 6 SNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQG 80 (159)
T ss_dssp CSSCCTTSBCCGGGBCSSTTCCCCCCCCCEEEECCCTTCCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECTT
T ss_pred ccCcCCcCCCChhHhccccccCCCCcCCeEEEcCCCCCCeEEEEEEECCCCCCC-----CcEEEEEEEccCCCccccCCC
Confidence 346788999998843 2 49999999864 4999999999999975 58999999999976 23332
Q ss_pred c------------------ccccccCCCCCCCCCCCcCC
Q psy6916 85 Q------------------TITPYAGPTPPKGTGTYIQE 105 (105)
Q Consensus 85 ~------------------~~~~Y~~P~Pp~gtg~HRy~ 105 (105)
. ....|.||+||+|+ .|||.
T Consensus 81 ~~~~~~~~~~g~~~g~n~~g~~~Y~GP~PP~g~-~HRY~ 118 (159)
T 1fjj_A 81 FGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGE-THRYI 118 (159)
T ss_dssp GGGTSSCCCTTCEECBCTTSSBSCCCBCCSTTC-CEEEE
T ss_pred cccccccCCCCcEEeecCCCCCcccCCCCcCCC-ceEEE
Confidence 2 37899999999999 99993
No 10
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}
Probab=99.70 E-value=3.7e-18 Score=119.55 Aligned_cols=80 Identities=25% Similarity=0.444 Sum_probs=59.1
Q ss_pred ecCCCccCchhhcc-----C---------CeEEEEcC-CCCeeEEEEeCCCCCCCCCCCCceeeEEEEEccCCCCCCCC-
Q psy6916 21 VDQGNTLTPSDLKQ-----A---------PEVTWNAD-SSSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGSQISRG- 84 (105)
Q Consensus 21 v~~G~~l~~~~t~~-----~---------P~i~~~~~-~~~~ytlimvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~g- 84 (105)
+..|..|+.+.++. + |.|+|.+. ..++|+|+|+|||||.+. .++|+||+++||+..++..|
T Consensus 32 f~~g~~ip~~y~~~~G~~~sP~~~~p~~Sp~L~W~~~~gtks~aLvm~DPDAP~~~---g~~~~HWvv~NI~~~~l~eg~ 108 (207)
T 2evv_A 32 TDSKGYLDAKFGGNAPKAFLNSNGLPTYSPKISWQKVEGAQSYALELIDHDAQKVC---GMPFVHWVVGNIAHNVLEENA 108 (207)
T ss_dssp CCTTSBCCGGGSTTSCGGGBCTTSCBCCCCCEEECCCTTCSEEEEEEEETTHHHHH---SSCEEEEEEEEECSSEECTTH
T ss_pred CCCcCCCChhhcccCCCCcCCccCCCCccceEEEecCCCCeEEEEEEECCCCCCCC---CCcEEEEEEeCCCCCccccCc
Confidence 45666676665543 3 47999775 349999999999999864 36899999999965544322
Q ss_pred -------------------ccc-------------ccccCCCCCCCCCCCcCC
Q psy6916 85 -------------------QTI-------------TPYAGPTPPKGTGTYIQE 105 (105)
Q Consensus 85 -------------------~~~-------------~~Y~~P~Pp~gtg~HRy~ 105 (105)
... ..|.||+||.| .|||.
T Consensus 109 ~~~~~g~~qG~N~~~~~~g~~~~~~~~k~~~~~~~~~Y~GP~PP~G--~HRYv 159 (207)
T 2evv_A 109 SMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNG--DHHYL 159 (207)
T ss_dssp HHHCSSSEECCCTTCSCSTTCSSCHHHHHHHHHHTCSCCCCCCSSS--CEEEE
T ss_pred ccCCCCceecccccccccccccccccccccccccccccCCCCCCCC--cEEEE
Confidence 111 78999999975 79993
No 11
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=43.94 E-value=14 Score=25.15 Aligned_cols=38 Identities=13% Similarity=0.417 Sum_probs=26.3
Q ss_pred cCCeEEEEc-----CCC--CeeEEEEeCCCCCCCCCCCCceeeEEEEE
Q psy6916 34 QAPEVTWNA-----DSS--SYYTLVMTDPDAPSRQNPKAREWRHWLVV 74 (105)
Q Consensus 34 ~~P~i~~~~-----~~~--~~ytlimvDpD~p~~~~~~~~~~lHwl~~ 74 (105)
..|.+.+-+ +.+ +.|-||||||.-+.-.+ ..-+.|+..
T Consensus 108 k~~nLrVLNSYWV~qD~~yK~yEVILVDp~H~aIr~---Dp~~nWI~~ 152 (194)
T 1ffk_I 108 KYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKS---DPQLSWVSR 152 (194)
T ss_pred cCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhc---Ccccccccc
Confidence 367766543 222 78999999999886543 355788876
No 12
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=34.56 E-value=26 Score=23.76 Aligned_cols=39 Identities=13% Similarity=0.377 Sum_probs=25.4
Q ss_pred cCCeEEEEc-----CC--CCeeEEEEeCCCCCCCCCCCCceeeEEEEEc
Q psy6916 34 QAPEVTWNA-----DS--SSYYTLVMTDPDAPSRQNPKAREWRHWLVVN 75 (105)
Q Consensus 34 ~~P~i~~~~-----~~--~~~ytlimvDpD~p~~~~~~~~~~lHwl~~n 75 (105)
..|.+.+-+ +. -+.|-||||||.-+.-.+ ..-+.|+...
T Consensus 108 k~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~---Dp~~nWI~~~ 153 (192)
T 3jyw_L 108 RAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRR---DARYNWICDP 153 (192)
T ss_dssp TSSSSEEEEEEEEEECSSCEEEEEEEECSSCSSTTT---SSTTTGGGSG
T ss_pred cCCCcEEeeeeeecCCCCcceEEEEEecCCchhhcc---CCccccccCc
Confidence 477776643 22 289999999999887543 2335565543
No 13
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=33.04 E-value=63 Score=18.99 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCCeeEEEEeCCCCCCCCCCCCceeeEEEEEccCCC
Q psy6916 35 APEVTWNADSSSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGS 79 (105)
Q Consensus 35 ~P~i~~~~~~~~~ytlimvDpD~p~~~~~~~~~~lHwl~~ni~~~ 79 (105)
-=.|.|+.+.+..|.|++-|.|. .+.|-.+|+-..
T Consensus 24 Y~NVfIEDDqG~HFRlVVR~~eg----------~mvWR~wnFEpd 58 (87)
T 2hjj_A 24 YSNITLEDDQGSHFRLVVRDTEG----------RMVWRAWNFEPD 58 (87)
T ss_dssp CTTEEEESCSSSCCEEEEECSSC----------CEEEEEESSSTT
T ss_pred hccceeecCCCCeEEEEEEcCCC----------cEEEEeeccCCc
Confidence 44578888889999999999533 378999998766
No 14
>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L
Probab=28.55 E-value=30 Score=23.67 Aligned_cols=27 Identities=19% Similarity=0.511 Sum_probs=19.5
Q ss_pred cCCeEEEEc-----CCC--CeeEEEEeCCCCCCC
Q psy6916 34 QAPEVTWNA-----DSS--SYYTLVMTDPDAPSR 60 (105)
Q Consensus 34 ~~P~i~~~~-----~~~--~~ytlimvDpD~p~~ 60 (105)
..|.+.+-+ +.+ +.|-||||||.-+.-
T Consensus 109 k~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aI 142 (204)
T 4a17_L 109 RVPELRVLNSYWVGQDGTYKFYEVILADPSHNAI 142 (204)
T ss_dssp HSCSSEEEEEEEEECCSSEEEEEEEEECTTSHHH
T ss_pred cCCCcEEeeeeeecCCCCcceEEEEEecCCchhh
Confidence 477776543 333 899999999988753
No 15
>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.92 E-value=30 Score=23.47 Aligned_cols=27 Identities=19% Similarity=0.514 Sum_probs=19.1
Q ss_pred cCCeEEEEc-----CCC--CeeEEEEeCCCCCCC
Q psy6916 34 QAPEVTWNA-----DSS--SYYTLVMTDPDAPSR 60 (105)
Q Consensus 34 ~~P~i~~~~-----~~~--~~ytlimvDpD~p~~ 60 (105)
..|.+.+-+ +.+ +.|-||||||.-|.-
T Consensus 107 k~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aI 140 (194)
T 3j21_M 107 KFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVI 140 (194)
T ss_dssp HSTTSEEEEEEEEEECSSEEEEEEEEECSSCHHH
T ss_pred cCCCceeeeceeecCCCCceeEEEEEEcCCChhh
Confidence 367766543 233 799999999988753
No 16
>3iz5_P 60S ribosomal protein L15 (L15E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_P 2zkr_m
Probab=21.72 E-value=29 Score=23.72 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=25.0
Q ss_pred cCCeEEEEc-----CCC--CeeEEEEeCCCCCCCCCCCCceeeEEEEEc
Q psy6916 34 QAPEVTWNA-----DSS--SYYTLVMTDPDAPSRQNPKAREWRHWLVVN 75 (105)
Q Consensus 34 ~~P~i~~~~-----~~~--~~ytlimvDpD~p~~~~~~~~~~lHwl~~n 75 (105)
..|.+.+-+ +.+ +.|-||||||.-+.-.+ ..-+.|+...
T Consensus 109 k~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~---Dp~~nWI~~~ 154 (204)
T 3iz5_P 109 KLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRN---DPRINWLCKP 154 (204)
T ss_dssp HSTTEEEEEEEEEEECSSEEEEEEEEEESSSHHHHT---CTTTGGGTSG
T ss_pred cCCCcEEeeeeeecCCCCcceEEEEEecCCchhhcc---CCccccccCc
Confidence 478887643 233 89999999999885432 1235565443
No 17
>2ccl_A Cellulosomal scaffolding protein A; cell adhesion, cohesin/dockerin complex, cellulosome, cohesi dockerin, scaffolding, cellulose degradation; 2.03A {Clostridium thermocellum} SCOP: b.2.2.2 PDB: 1ohz_A
Probab=20.19 E-value=1.3e+02 Score=19.43 Aligned_cols=46 Identities=7% Similarity=0.246 Sum_probs=29.6
Q ss_pred eeEEEEEcCCC---eeecCCCccCchhhccCCeEEEEcC-CCCeeEEEEeCC
Q psy6916 8 GSMLITYNSGK---LKVDQGNTLTPSDLKQAPEVTWNAD-SSSYYTLVMTDP 55 (105)
Q Consensus 8 ~~L~v~y~~~~---~~v~~G~~l~~~~t~~~P~i~~~~~-~~~~ytlimvDp 55 (105)
+.+.|.|.++- ..|.+|..+.-.. ..+.+.+... ..+...+++.|-
T Consensus 38 ~df~l~YD~~~Lev~sV~~G~iv~~~~--~~~~F~~~~~~~~G~i~~l~~d~ 87 (158)
T 2ccl_A 38 CDFVFRYDPNVLEIIGIDPGDIIVDPN--PTKSFDTAIYPDRKIIVFLFAED 87 (158)
T ss_dssp EEEEEECCTTTEEEEEEEECTTCCCSS--GGGTEEEEEETTTTEEEEEEECS
T ss_pred EEEEEEECCcceEEEeecCcceecCCC--cccccceeeecCCCEEEEEEeec
Confidence 57889993321 4678999984332 2356777654 457777788763
Done!