RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6916
         (105 letters)



>d1a44a_ b.17.1.1 (A:) Phosphatidylethanolamine binding protein,
           PEBP {Cow (Bos taurus) [TaxId: 9913]}
          Length = 185

 Score =  108 bits (272), Expect = 3e-32
 Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 3/93 (3%)

Query: 12  ITYNSGKLKVDQGNTLTPSDLKQAPE-VTWNA-DSSSYYTLVMTDPDAPSRQNPKAREWR 69
           + Y   +   + G  LTP+ +K  P  +TW+  D    YTLV+TDPDAPSR++PK REW 
Sbjct: 26  VKYGGAE-VDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRKDPKYREWH 84

Query: 70  HWLVVNIPGSQISRGQTITPYAGPTPPKGTGTY 102
           H+LVVN+ G+ IS G  ++ Y G  PPKGTG +
Sbjct: 85  HFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLH 117


>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 219

 Score = 94.8 bits (235), Expect = 3e-26
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 35/133 (26%)

Query: 5   VANGSMLITYNSGKLKVDQGNTLTPSDLKQAPEVTWN----------------ADSSSYY 48
             +G + + Y+S    V  GNTL     +  P+  +                       +
Sbjct: 31  QPSGILAVEYSSSA-PVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLF 89

Query: 49  TLVMTDPDAPSRQNPKAREWRHWLVVNIPGS------------------QISRGQTITPY 90
           TLVMTDPDAPS+ + K  E+ H +  ++                           T+  Y
Sbjct: 90  TLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEY 149

Query: 91  AGPTPPKGTGTYI 103
            GP PPKG+G + 
Sbjct: 150 MGPAPPKGSGPHR 162


>d1qoua_ b.17.1.1 (A:) Centroradialis protein Cen {Garden snapdragon
           (Antirrhinum majus) [TaxId: 4151]}
          Length = 164

 Score = 93.2 bits (231), Expect = 4e-26
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 10  MLITYNSGKL--KVDQGNTLTPSDLKQAPEVTW-NADSSSYYTLVMTDPDAPSRQNPKAR 66
           M + YNS      V  G+ L PS +   P V     D  S++TL+MTDPD P   +P  R
Sbjct: 17  MSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDVPGPSDPYLR 76

Query: 67  EWRHWLVVNIPGS-QISRGQTITPYAGPTPPKGTGTYI 103
           E  HW+V +IPG+   S G+ +  Y  P P  G   ++
Sbjct: 77  EHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFV 114


>d1fuxa_ b.17.1.2 (A:) Hypothetical protein YbcL {Escherichia coli
           [TaxId: 562]}
          Length = 165

 Score = 48.9 bits (116), Expect = 4e-09
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 28/90 (31%)

Query: 36  PEVTWNA--DSSSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGS-------------- 79
           P +TW+   + +  + + + DPDAP+        W HW VVNIP +              
Sbjct: 33  PSLTWSGVPEGTKSFAVTVYDPDAPTG-----SGWWHWTVVNIPATVTYLPVDAGRRDGT 87

Query: 80  -------QISRGQTITPYAGPTPPKGTGTY 102
                  Q         + G  PPKG   +
Sbjct: 88  KLPTGAVQGRNDFGYAGFGGACPPKGDKPH 117


>d1fjja_ b.17.1.2 (A:) Hypothetical protein YbhB {Escherichia coli
           [TaxId: 562]}
          Length = 159

 Score = 45.7 bits (108), Expect = 6e-08
 Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 27/85 (31%)

Query: 36  PEVTWNA--DSSSYYTLVMTDPDAPSRQNPKAREWRHWLVVNIPGS-------------- 79
           P + W+     +  + +   DPDAP+        W HW+VVN+P                
Sbjct: 33  PHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVA 87

Query: 80  ------QISRGQTITPYAGPTPPKG 98
                 Q       T Y G  PPKG
Sbjct: 88  MPDGVLQTRTDFGKTGYDGAAPPKG 112


>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 217

 Score = 24.0 bits (51), Expect = 5.2
 Identities = 9/50 (18%), Positives = 20/50 (40%)

Query: 20 KVDQGNTLTPSDLKQAPEVTWNADSSSYYTLVMTDPDAPSRQNPKAREWR 69
          ++D    + P+      + +WN++  S    V  D      ++P A+   
Sbjct: 6  RIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTD 55


>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 410

 Score = 23.5 bits (50), Expect = 7.2
 Identities = 6/47 (12%), Positives = 9/47 (19%), Gaps = 1/47 (2%)

Query: 22  DQGNTLTPSDLKQAPEVTWNADSSSYYTLVMTDPDAPSRQNPKAREW 68
                 T  D         +       +  M   D   R +P     
Sbjct: 323 AGAWQYTAKDGA-GAGTIPDPFGGPGRSPTMLATDLSLRVDPIYERI 368


>d1e7ua2 b.7.1.1 (A:351-524) Phoshoinositide 3-kinase (PI3K) {Pig
          (Sus scrofa) [TaxId: 9823]}
          Length = 174

 Score = 23.0 bits (49), Expect = 8.6
 Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 2/52 (3%)

Query: 49 TLVMTDPDAPSRQNPKAREWRHWLVVNIPGSQISRGQ--TITPYAGPTPPKG 98
            V+       +   +   W  WL  +I    + +G    +  Y G  P   
Sbjct: 41 QQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGAKPALS 92


>d1vqo21 a.137.1.1 (2:1-49) Ribosomal protein L39e {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 49

 Score = 21.7 bits (46), Expect = 9.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 51 VMTDPDAPSRQNPKAREWR 69
          VM   D   ++N K R WR
Sbjct: 25 VMLKTDREVQRNHKRRHWR 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.129    0.394 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,812
Number of extensions: 16450
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 10
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.4 bits)