BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6917
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NFD|E Chain E, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
pdb|1NFD|G Chain G, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
Length = 212
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 15 VGDVYPNETKVIWKFNESTLDDWIVTT 41
V D YP V WK N +T++D + TT
Sbjct: 137 VNDFYPGSATVTWKANGATINDGVKTT 163
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 39 VTTDSDHNEGLSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPF-- 96
VTT S NEG +A + K F + GR+Q PL+T IS G S F
Sbjct: 285 VTTTSA-NEGKFEARF---YHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIR 340
Query: 97 --QLELDYIGIEYDPNHTEEFAYEM 119
E Y +YD E M
Sbjct: 341 LHHFEKSYFDFKYDVEKAAEAKEHM 365
>pdb|3Q2G|A Chain A, Adamts1 In Complex With A Novel N-Hydroxyformamide
Inhibitors
pdb|3Q2G|B Chain B, Adamts1 In Complex With A Novel N-Hydroxyformamide
Inhibitors
pdb|3Q2H|A Chain A, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
Adam-Ts4
pdb|3Q2H|B Chain B, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
Adam-Ts4
Length = 297
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 85 GLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAY 117
G L+D+ P QL D G YD N +F +
Sbjct: 205 GECLMDKPQNPIQLPGDLPGTSYDANRQCQFTF 237
>pdb|2JIH|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-rich Domain (complex-form)
pdb|2JIH|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-rich Domain (complex-form)
pdb|2V4B|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-Rich Domain (Apo-Form)
pdb|2V4B|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-Rich Domain (Apo-Form)
Length = 300
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 85 GLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAY 117
G L+D+ P QL D G YD N +F +
Sbjct: 208 GECLMDKPQNPIQLPGDLPGTSYDANRQCQFTF 240
>pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|B Chain B, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|C Chain C, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|D Chain D, Putrescine Receptor (Potf) From E. Coli
Length = 344
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 72 IQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
I P + +++ S G+S +D F L+Y+G DPN T+
Sbjct: 137 ILKPENLEKLKSCGVSFLDAPEEVFATVLNYLG--KDPNSTK 176
>pdb|1KV9|A Chain A, Structure At 1.9 A Resolution Of A Quinohemoprotein
Alcohol Dehydrogenase From Pseudomonas Putida Hk5
Length = 668
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 2 WKDEVQ-----DKLYMDPVGDVYPNETKVIWKFNESTLDDWIVT 40
W EV+ D LY+ + + P+ K+ W + + D W T
Sbjct: 254 WNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT 297
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 903 ETFFVLTDSDHKSGFSKQALLL 924
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 903 ETFFVLTDSDHKSGFSKQALLL 924
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 903 ETFFVLTDSDHKSGFSKQALLL 924
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 903 ETFFVLTDSDHKSGFSKQALLL 924
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 903 ETFFVLTDSDHKSGFSKQALLL 924
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 903 ETFFVLTDSDHKSGFSKQALLL 924
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 940 ETFFVLTDSDHKSGFSKQALLL 961
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 903 ETFFVLTDSDHKSGFSKQALLL 924
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 903 ETFFVLTDSDHKSGFSKQALLL 924
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 903 ETFFVLTDSDHKSGFSKQALLL 924
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 903 ETFFVLTDSDHKSGFSKQALLL 924
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 DDWIVTTDSDHNEGLSKASLAI 56
+ + V TDSDH G SK +L +
Sbjct: 901 ETFFVLTDSDHKSGFSKQALLL 922
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,356,463
Number of Sequences: 62578
Number of extensions: 173577
Number of successful extensions: 1033
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 29
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)