BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6917
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated protein 30,
mitochondrial OS=Drosophila melanogaster GN=CG7598 PE=2
SV=1
Length = 296
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 51/67 (76%), Gaps = 2/67 (2%)
Query: 56 IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTE 113
IPFSKFFL SKGR+QD Q + +R++ G S+ + +GPF LE+DY+G+EYDP+H E
Sbjct: 221 IPFSKFFLSSKGRVQDRQGAIPLNRVTHFGFSVAAKKGMDGPFGLEIDYVGLEYDPSHRE 280
Query: 114 EFAYEMY 120
EFAYEMY
Sbjct: 281 EFAYEMY 287
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1 MWKDEVQDKLYMDPVGDVYPNETKVIWKFNES-TLDDWIVTTDSDHNEGLSKASLAI 56
+W+ EV+++ DP+ P ET V++ F LD W VTTD+DH EG S A+L +
Sbjct: 66 LWRQEVKEQFESDPILVFRPGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLEL 122
>sp|Q9CWX2|CIA30_MOUSE Complex I intermediate-associated protein 30, mitochondrial OS=Mus
musculus GN=Ndufaf1 PE=2 SV=2
Length = 328
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%)
Query: 54 LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
+ IPFSKFF ++GR++D+Q PL D+ISSIG +L D+ +GPF LE+D+IG+ DP HTE
Sbjct: 253 VKIPFSKFFFSNQGRVRDVQGPLVLDKISSIGFTLSDKVDGPFFLEIDFIGVFTDPAHTE 312
Query: 114 EFAYE 118
EFAYE
Sbjct: 313 EFAYE 317
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 14 PVGDVYPNETKVIWKFNEST-LDDWIVTTD 42
P+ +V + +V+W+F E LD WIVT+D
Sbjct: 113 PLQEVIMEQARVVWQFREKEDLDKWIVTSD 142
>sp|Q0MQ84|CIA30_PANTR Complex I intermediate-associated protein 30, mitochondrial OS=Pan
troglodytes GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%)
Query: 54 LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
+ IPFSKFF ++GRI+D+Q+ L D+ISSIG +L D+ +GPF LE+D+IG+ DP HTE
Sbjct: 252 VKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTE 311
Query: 114 EFAYE 118
EFAYE
Sbjct: 312 EFAYE 316
>sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein 30, mitochondrial
OS=Gorilla gorilla gorilla GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%)
Query: 54 LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
+ IPFSKFF ++GRI+D+Q+ L D+ISSIG +L D+ +GPF LE+D+IG+ DP HTE
Sbjct: 252 VKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTE 311
Query: 114 EFAYE 118
EFAYE
Sbjct: 312 EFAYE 316
>sp|Q0MQ82|CIA30_PONPY Complex I intermediate-associated protein 30, mitochondrial
OS=Pongo pygmaeus GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%)
Query: 54 LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
+ IPFSKFF ++GRI+D+Q+ L D+ISSIG +L D+ +GPF LE+D+IG+ DP HTE
Sbjct: 252 VKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTE 311
Query: 114 EFAYE 118
EFAYE
Sbjct: 312 EFAYE 316
>sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein 30, mitochondrial OS=Homo
sapiens GN=NDUFAF1 PE=1 SV=2
Length = 327
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%)
Query: 54 LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
+ IPFSKFF ++GRI+D+Q+ L D+ISSIG +L D+ +GPF LE+D+IG+ DP HTE
Sbjct: 252 VKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTE 311
Query: 114 EFAYE 118
EFAYE
Sbjct: 312 EFAYE 316
>sp|Q18726|CIA30_CAEEL Probable complex I intermediate-associated protein 30,
mitochondrial OS=Caenorhabditis elegans GN=C50B8.3 PE=3
SV=1
Length = 340
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 56 IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
IPFSKFF GRIQD Q ++ + SSIG+ L+D+ +G F+LE+DYIG+ D H E+F
Sbjct: 266 IPFSKFFHTVAGRIQDRQYRVNLEDTSSIGIVLMDRIDGDFRLEIDYIGVYNDTTHVEDF 325
Query: 116 AYEMY 120
AYE Y
Sbjct: 326 AYETY 330
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 12 MDPVGDVYPNETKVIWKFN-ESTLDDWIVTTDSDHNEGLSKASLA 55
++ +G V NE +V ++F+ + LD W + DSD EG S SL
Sbjct: 122 LEDIGFVRHNEARVDYRFDTQEKLDLWKIGCDSDWKEGFSTCSLV 166
>sp|Q61FQ3|CIA30_CAEBR Probable complex I intermediate-associated protein 30,
mitochondrial OS=Caenorhabditis briggsae GN=CBG11538
PE=3 SV=1
Length = 340
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 56 IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
IPFSKFF GRIQD Q ++ + SSIG+ L+D+ +G F+LE+DYIG+ D H E+F
Sbjct: 266 IPFSKFFHTVAGRIQDRQYRVNLEDTSSIGIVLMDRIDGDFKLEIDYIGVYNDTTHVEDF 325
Query: 116 AYEMY 120
AYE Y
Sbjct: 326 AYETY 330
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 12 MDPVGDVYPNETKVIWKFNES-TLDDWIVTTDSDHNEGLSKASLA 55
++ +G V NE +V +KF+ S LD W + DSD EG S SL
Sbjct: 122 LEDIGFVRHNEARVEYKFDTSEKLDLWKIGCDSDWKEGFSTCSLV 166
>sp|O35507|PPARA_CAVPO Peroxisome proliferator-activated receptor alpha OS=Cavia
porcellus GN=PPARA PE=2 SV=1
Length = 467
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 49 LSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGL 86
L L P S++FLQ G IQDI L D S G
Sbjct: 14 LEAEDLESPLSEYFLQEMGTIQDISRSLGEDSSGSFGF 51
>sp|A8FZZ3|HLDE_SHESH Bifunctional protein HldE OS=Shewanella sediminis (strain HAW-EB3)
GN=hldE PE=3 SV=1
Length = 476
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 17 DVYP-NETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKFFLQ---SKGRIQDI 72
+ YP +E+K + +ES LD+ V SD+ +G AI + F+Q +KG ++ +
Sbjct: 123 EAYPEDESKALLTLSESALDNVAVVVLSDYAKG------AITQPQEFIQKAIAKG-VKVL 175
Query: 73 QNPLDTDRISSIGLSLVDQNNGPFQ 97
+P +D G SL+ N G F+
Sbjct: 176 VDPKGSDFSRYRGASLITPNMGEFE 200
>sp|Q07G43|SDE2_XENTR Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1
Length = 468
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 49 LSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSI 84
LS+A AIP + F++ G + D++ L R SI
Sbjct: 29 LSQAGTAIPLTDFYITCNGHLADLEEKLQDGRTYSI 64
>sp|O05542|DHET_GLUOX Alcohol dehydrogenase [cytochrome c] OS=Gluconobacter oxydans
(strain 621H) GN=adhA PE=1 SV=2
Length = 757
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 8 DKLYMDPVGDVYPNETKVIWKFNESTLDDW-------IVTTDSDHNEGLSKASLAIPFSK 60
D L++ + + P+ K +W F E+ +D+W I+T D N + + P +
Sbjct: 312 DNLFLGSIVAINPDTGKYVWHFQETPMDEWDYTSVQQIMTLDMPVNGEMRHVIVHAPKNG 371
Query: 61 FF 62
FF
Sbjct: 372 FF 373
>sp|Q672I1|POLG_SVSAP Genome polyprotein OS=Sapporo virus (isolate
GI/Human/Germany/pJG-Sap01) PE=3 SV=1
Length = 2280
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 78 TDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIV 130
T+ I+ L+LV +N F D G D N + ++EMY N++RG V
Sbjct: 2106 TNSINPASLALVRISNNDF----DTSGFANDKNVVVQMSWEMYTGTNQIRGQV 2154
>sp|Q69014|POLG_SVM93 Genome polyprotein (Fragment) OS=Sapporo virus (strain Human/United
Kingdom/Manchester/1993) GN=ORF1 PE=1 SV=1
Length = 2208
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 78 TDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIV 130
T+ I+ L+LV +N F D G D N + ++EMY N++RG V
Sbjct: 2034 TNSINPASLALVRISNNDF----DTSGFANDKNVVVQMSWEMYTGTNQIRGQV 2082
>sp|P28036|DHET_ACEPO Alcohol dehydrogenase [cytochrome c] OS=Acetobacter polyoxogenes
GN=adhA PE=1 SV=1
Length = 738
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 8 DKLYMDPVGDVYPNETKVIWKFNESTLDDWIVTTD 42
D L++ + + P + +W F E+ +D W T+D
Sbjct: 313 DNLFLGSIVALKPETGEYVWHFQETPMDQWDFTSD 347
>sp|A3CNI9|PYRR_STRSV Bifunctional protein PyrR OS=Streptococcus sanguinis (strain SK36)
GN=pyrR PE=3 SV=1
Length = 172
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 72 IQNPLDTDRISSIGLS-LVDQNNGPFQLELDYIGIEYDPNHTEEFAYEM 119
I N + R S +GL+ LVD+ + + DY+G + TEE EM
Sbjct: 110 IDNLVSHGRPSRVGLAVLVDRGHRELPIRADYVGKNIPTSQTEEIIVEM 158
>sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens
GN=CELSR1 PE=1 SV=1
Length = 3014
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 60 KFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNG 94
+F+L S I D+ NPLD + + LS+ Q+ G
Sbjct: 506 QFYLHSLSGILDVINPLDFEDVQKYSLSIKAQDGG 540
>sp|O31960|YOMX_BACSU SPBc2 prophage-derived uncharacterized protein YomX OS=Bacillus
subtilis (strain 168) GN=yomX PE=4 SV=1
Length = 216
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 12 MDPVGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKFFLQSKGRIQD 71
+ + D+Y + KFN+ T W++T+ N+ KA + I + FFL S+ ++
Sbjct: 62 LGEIADIYRGG---VVKFNDET---WLITSHPLSNKIYKKAEIKICGTSFFLTSEDKL-- 113
Query: 72 IQNPLDTDRISSI 84
+DT +I+ I
Sbjct: 114 ----IDTGKINEI 122
>sp|Q5H9S7|DCA17_HUMAN DDB1- and CUL4-associated factor 17 OS=Homo sapiens GN=DCAF17 PE=1
SV=1
Length = 520
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 4 DEVQDKLYMD-PVGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKF 61
++++D L + PVGD+ PN + T +W++ + + L K LA P+ KF
Sbjct: 95 EKIEDALLWECPVGDILPNSSDYKSSLIALTAHNWLLRISATTGKILEKIYLA-PYCKF 152
>sp|P26951|IL3RA_HUMAN Interleukin-3 receptor subunit alpha OS=Homo sapiens GN=IL3RA PE=1
SV=1
Length = 378
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 13 DPVGDVYPNETKVIWKFNESTLDDWIVT 40
DP+GD + N+ V+W+ ++ L++ +VT
Sbjct: 343 DPIGDSFQNDKLVVWEAGKAGLEECLVT 370
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,123,537
Number of Sequences: 539616
Number of extensions: 2098553
Number of successful extensions: 4946
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4924
Number of HSP's gapped (non-prelim): 44
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)