Query psy6917
Match_columns 132
No_of_seqs 171 out of 255
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 21:44:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0a_A Endoglucanase H; carboh 98.0 1.1E-05 3.9E-10 62.4 5.7 56 53-112 115-174 (178)
2 1v0a_A Endoglucanase H; carboh 72.1 6.9 0.00024 29.8 5.3 72 22-102 6-91 (178)
3 3lq6_A Capsid protein; protrud 24.6 79 0.0027 26.2 4.2 32 1-32 231-273 (320)
4 3pvd_A Capsid; greek KEY, mixe 21.3 82 0.0028 26.1 3.7 32 1-32 228-270 (316)
5 2vvf_A Major capsid protein P2 20.5 56 0.0019 26.4 2.5 42 43-91 13-54 (269)
6 1wmx_A COG3291: FOG: PKD repea 17.8 3.5E+02 0.012 21.0 7.3 44 55-108 137-180 (205)
7 2uur_A Collagen alpha-1(IX) ch 17.8 2.5E+02 0.0085 21.5 5.6 62 35-112 155-224 (245)
8 3imm_A Putative secreted glyco 17.6 59 0.002 24.3 1.9 19 85-103 38-56 (201)
9 2obs_A Capsid protein; P domai 16.7 1.1E+02 0.0039 25.4 3.5 32 1-32 239-281 (327)
10 3s5q_A Putative glycosylhydrol 16.6 64 0.0022 24.5 1.9 19 85-103 51-69 (214)
No 1
>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30
Probab=97.95 E-value=1.1e-05 Score=62.43 Aligned_cols=56 Identities=29% Similarity=0.397 Sum_probs=46.0
Q ss_pred EEEEeCCCceeccCCeecCCCC----CCCccCccEEEEEEecCCCCceEEEEeEEEEEeCCCch
Q psy6917 53 SLAIPFSKFFLQSKGRIQDIQN----PLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHT 112 (132)
Q Consensus 53 ~l~IPfs~F~~t~RGr~~d~q~----~L~~~~I~~iGf~I~dkq~GpF~LeId~I~a~~d~~~~ 112 (132)
.++|||++|. ||-+.|+..+ +||+++|++|+|+++...+|. |.||+|+++.-..|.
T Consensus 115 ~IeIPFs~F~--~r~~~~P~~~~~~~~~d~~~i~si~~m~G~~~~g~--~~id~I~l~~~~~~~ 174 (178)
T 1v0a_A 115 TIEIPFSSFR--RRLDYQPPGQDMSGTLDLDNIDSIHFMYANNKSGK--FVVDNIKLIGALEHH 174 (178)
T ss_dssp EEEEEGGGCE--ECCSCCCTTCCCCSSCCTTSEEEEEEEESSSCCEE--EEEEEEEEECBCCCC
T ss_pred EEEEEHHHhc--cccccCCCCcccCCCcChhHeEEEEEEEcCCCcce--EEEEEEEEEeeeccc
Confidence 3499999999 7777766544 899999999999988766666 899999999777654
No 2
>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30
Probab=72.08 E-value=6.9 Score=29.83 Aligned_cols=72 Identities=8% Similarity=0.100 Sum_probs=41.5
Q ss_pred CceEEEEEc-CCCCCCeEEeeccccCCccceEEE-------EEeCCCceecc-C-Ce--ecCCCCCCCccCccEEEEEEe
Q psy6917 22 ETKVIWKFN-ESTLDDWIVTTDSDHNEGLSKASL-------AIPFSKFFLQS-K-GR--IQDIQNPLDTDRISSIGLSLV 89 (132)
Q Consensus 22 ~~~vlf~F~-~~~l~~W~v~sD~v~GeG~S~a~l-------~IPfs~F~~t~-R-Gr--~~d~q~~L~~~~I~~iGf~I~ 89 (132)
...++.+|. +. .|..++|+ | |.-+..+ .+ +---.+ . |- +..+.++.|++.-..|-|-+.
T Consensus 6 ~~~~i~df~~~~---~W~~v~Ds--~-~s~s~~~~~g~~~~~l---~VS~~N~nGGF~svr~n~~~~d~s~~~GI~l~vk 76 (178)
T 1v0a_A 6 GEKMLDDFEGVL---NWGSYSGE--G-AKVSTKIVSGKTGNGM---EVSYTGTTDGYWGTVYSLPDGDWSKWLKISFDIK 76 (178)
T ss_dssp SEEEEECSSSSC---CCEEEEET--T-CEEEEEEEECSSSEEE---EEEEECCSSCEEEEEEECSCCCCTTCCEEEEEEE
T ss_pred cCcceecCCCCC---ceEEEcCC--C-cEEEEEEecCceeeEE---EEEEecCCCCEEEEEcCCCCCCHhHCCcEEEEEE
Confidence 344677776 44 99999995 4 2222111 12 111112 2 21 222258999999999999998
Q ss_pred cC--CCCceEEEEeE
Q psy6917 90 DQ--NNGPFQLELDY 102 (132)
Q Consensus 90 dk--q~GpF~LeId~ 102 (132)
+. ..-.++++|..
T Consensus 77 G~~~nG~~y~~~LR~ 91 (178)
T 1v0a_A 77 SVDGSANEIRFMIAE 91 (178)
T ss_dssp EC---CCCEEEEEEE
T ss_pred cCCCCCCEEEEEEee
Confidence 73 34456666655
No 3
>3lq6_A Capsid protein; protruding (P) domain, viral protein; 2.00A {Murine norovirus 1} PDB: 3lqe_A
Probab=24.57 E-value=79 Score=26.25 Aligned_cols=32 Identities=3% Similarity=0.019 Sum_probs=23.9
Q ss_pred Cchhhhhhhhc-------cCcee-eec-CCCceEEEEEc--CC
Q psy6917 1 MWKDEVQDKLY-------MDPVG-DVY-PNETKVIWKFN--ES 32 (132)
Q Consensus 1 ~~~~e~~~~~~-------~~~~~-~~~-~~~~~vlf~F~--~~ 32 (132)
|+.||+..|+. +|-.+ -|. |..-++||+|+ ++
T Consensus 231 LLPqE~V~HF~~e~ap~q~dvALlrYvnpdTGRvLfE~KLy~~ 273 (320)
T 3lq6_A 231 ALPQEFVSWFASNAFTVQSEALLLRYRNTLTGQLLFECKLYNE 273 (320)
T ss_dssp SSCHHHHHHHHHHCCCCCSSEEEEEEECTTTCCEEEEEEEETT
T ss_pred cCCHHHHHHHHhccCccccceEEEEeEcCCCCCEEEEEEeccC
Confidence 68899999995 44433 344 56789999999 65
No 4
>3pvd_A Capsid; greek KEY, mixed alpha/beta structure, receptor binding, carbohydrate/sugar binding, viral protein; HET: SIA GAL NDG FUC; 1.90A {Human calicivirus} PDB: 3pum_A* 3pun_A*
Probab=21.34 E-value=82 Score=26.06 Aligned_cols=32 Identities=9% Similarity=0.295 Sum_probs=24.1
Q ss_pred Cchhhhhhhhc-------cCcee-eec-CCCceEEEEEc--CC
Q psy6917 1 MWKDEVQDKLY-------MDPVG-DVY-PNETKVIWKFN--ES 32 (132)
Q Consensus 1 ~~~~e~~~~~~-------~~~~~-~~~-~~~~~vlf~F~--~~ 32 (132)
|+.||+..|+. +|-.+ -|. |..-++||+|+ ++
T Consensus 228 LLPqE~V~HF~~e~ap~q~dvALlrYvnpdTgRvLfE~KLy~~ 270 (316)
T 3pvd_A 228 LLPQEFVQHFYQEAATARSEVALLRFVNPDTGRALFESKLHKQ 270 (316)
T ss_dssp SSCHHHHHHHHHHCCCCSSSEEEEEEEETTTTEEEEEEEEETT
T ss_pred cCCHHHHHHHHhccCCCccceEEEEeecCCCCCEEEEEEecCC
Confidence 68899999995 44433 344 67799999999 65
No 5
>2vvf_A Major capsid protein P2; double jelly-roll viral capsid, viral protein; 2.5A {Pseudoalteromonas phage PM2} PDB: 2w0c_A
Probab=20.46 E-value=56 Score=26.44 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=34.6
Q ss_pred cccCCccceEEEEEeCCCceeccCCeecCCCCCCCccCccEEEEEEecC
Q psy6917 43 SDHNEGLSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQ 91 (132)
Q Consensus 43 ~v~GeG~S~a~l~IPfs~F~~t~RGr~~d~q~~L~~~~I~~iGf~I~dk 91 (132)
.+.| ++|+|+||.. |||..-.+. -..+++++|+.|-+.+.+|
T Consensus 13 V~~G---~~AtL~lPiG---~TY~~I~L~-~T~~t~a~I~~I~VklNgk 54 (269)
T 2vvf_A 13 VAAG---NSCSIKLPIG---QTYEVIDLR-YSGVTPSQIKNVRVELDGR 54 (269)
T ss_dssp CCTT---CEEEEEECSS---SEEEEEEEE-EESSCGGGEEEEEEEETTE
T ss_pred cCCC---CEEEEEeccC---CceEEEEEE-EcCCCHHHheeEEEEECCE
Confidence 3456 8999999998 899886655 2678999999999999875
No 6
>1wmx_A COG3291: FOG: PKD repeat; CBM30, carbohydrate binding module family30, CELJ, sugar BIN protein; 2.00A {Clostridium thermocellum} SCOP: b.18.1.24 PDB: 1wzx_A 2c24_A
Probab=17.82 E-value=3.5e+02 Score=20.98 Aligned_cols=44 Identities=20% Similarity=0.393 Sum_probs=29.2
Q ss_pred EEeCCCceeccCCeecCCCCCCCccCccEEEEEEecCCCCceEEEEeEEEEEeC
Q psy6917 55 AIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYD 108 (132)
Q Consensus 55 ~IPfs~F~~t~RGr~~d~q~~L~~~~I~~iGf~I~dkq~GpF~LeId~I~a~~d 108 (132)
+||+.+| .. .+ ..+++.++ ..|-++....+||+.-||.|++..-
T Consensus 137 siPLkdF-M~-e~------td~dpr~~--~~fnlgk~~~~phtVwIDNIkLts~ 180 (205)
T 1wmx_A 137 KIPLRDL-MK-IN------NGFDPSSV--TCLVFSKRYADPFTVWFSDIKITSE 180 (205)
T ss_dssp EEEGGGT-SC-ST------TCCCTTSE--EEEEEECSSSCCEEEEEEEEEEECC
T ss_pred EeeHHHh-cc-cc------CCcCcccc--eEEEecCCCCCceEEEEeeEEEEec
Confidence 7888887 22 22 22334433 3466666689999999999998843
No 7
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}
Probab=17.79 E-value=2.5e+02 Score=21.46 Aligned_cols=62 Identities=23% Similarity=0.394 Sum_probs=42.3
Q ss_pred CCeEEeeccccCCccceEEE--------EEeCCCceeccCCeecCCCCCCCccCccEEEEEEecCCCCceEEEEeEEEEE
Q psy6917 35 DDWIVTTDSDHNEGLSKASL--------AIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIE 106 (132)
Q Consensus 35 ~~W~v~sD~v~GeG~S~a~l--------~IPfs~F~~t~RGr~~d~q~~L~~~~I~~iGf~I~dkq~GpF~LeId~I~a~ 106 (132)
.+|+-+.=+|.| ++.+| ..|+. ...+++.+.+..||=+..+ .+..|.-+|.++.++
T Consensus 155 g~WHklalsV~~---~~VtLyvDC~~~~~~~l~------------~~~~i~~~G~~~lG~~~~~-~~~~f~g~lQ~l~i~ 218 (245)
T 2uur_A 155 SQWHKIMIGVER---SSATLFVDCNRIESLPIK------------PRGPIDIDGFAVLGKLADN-PQVSVPFELQWMLIH 218 (245)
T ss_dssp SSCEEEEEEEET---TEEEEEETTEEEEEEECC------------CBCCCCCSSEEEEEEESSC-TTCBCCEEEEEEEEE
T ss_pred CCEEEEEEEEEC---CEEEEEEecCcccccccC------------CCCccccCCEEEEEEecCC-CCCceEEEeEEEEEE
Confidence 678888888888 66666 33442 1234566666667765322 234899999999999
Q ss_pred eCCCch
Q psy6917 107 YDPNHT 112 (132)
Q Consensus 107 ~d~~~~ 112 (132)
.|+.+.
T Consensus 219 ~dp~~a 224 (245)
T 2uur_A 219 CDPLRP 224 (245)
T ss_dssp SCTTGG
T ss_pred cCcchh
Confidence 999555
No 8
>3imm_A Putative secreted glycosylhydrolase; YP_001301887.1, putative glycosyl hydrolase; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=17.57 E-value=59 Score=24.32 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=17.1
Q ss_pred EEEEecCCCCceEEEEeEE
Q psy6917 85 GLSLVDQNNGPFQLELDYI 103 (132)
Q Consensus 85 Gf~I~dkq~GpF~LeId~I 103 (132)
|.++.++.-++|+|++++=
T Consensus 38 g~l~t~~~y~dF~L~~e~k 56 (201)
T 3imm_A 38 ESIWTKDEYENFELDLDFK 56 (201)
T ss_dssp CCEEESSCBCSEEEEEEEE
T ss_pred CcEEECCeeccEEEEEEEE
Confidence 7788899999999999984
No 9
>2obs_A Capsid protein; P domain, norovirus VA387, blood group trisaccharides type A, viral protein; HET: FUC GL0 A2G; 2.00A {Norovirus} PDB: 2obr_A* 2obt_A* 3bqj_A 3sjp_A 3sej_A 3skb_A 3sld_A* 3sln_A*
Probab=16.71 E-value=1.1e+02 Score=25.39 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=23.6
Q ss_pred Cchhhhhhhhc-------cCcee-eec-CCCceEEEEEc--CC
Q psy6917 1 MWKDEVQDKLY-------MDPVG-DVY-PNETKVIWKFN--ES 32 (132)
Q Consensus 1 ~~~~e~~~~~~-------~~~~~-~~~-~~~~~vlf~F~--~~ 32 (132)
||.||+..|+. +|-.+ -|. |..-++||+|+ ++
T Consensus 239 LLPqE~v~HF~~e~ap~q~dvALlrYvnpdTgRvLfE~KLy~~ 281 (327)
T 2obs_A 239 LLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKS 281 (327)
T ss_dssp SSCHHHHHHHHHHCCCCSSSEEEEEEECTTTCCEEEEEEEETT
T ss_pred cCCHHHHHhhhcccCCCccceEEEEeecCCCCCEeEEEEecCC
Confidence 68899999995 44333 344 56789999999 65
No 10
>3s5q_A Putative glycosylhydrolase; concanavalin A-like lectins/glucanases, structural genomics, center for structural genomics, JCSG; 1.85A {Parabacteroides distasonis}
Probab=16.60 E-value=64 Score=24.50 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=17.2
Q ss_pred EEEEecCCCCceEEEEeEE
Q psy6917 85 GLSLVDQNNGPFQLELDYI 103 (132)
Q Consensus 85 Gf~I~dkq~GpF~LeId~I 103 (132)
|.++.++.-++|+|++++=
T Consensus 51 G~L~T~~~y~dF~L~lE~k 69 (214)
T 3s5q_A 51 QSIWTKVQYENFILDLEFK 69 (214)
T ss_dssp CCEEESSCBCSEEEEEEEE
T ss_pred CcEEECCeeccEEEEEEEE
Confidence 7888999999999999984
Done!