RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6917
         (132 letters)



>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium
           thermocellum [TaxId: 1515]}
          Length = 167

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 56  IPFSKFFLQS--KGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLE-LDYIG 104
           IPFS F  +   +   QD+   LD D I SI     +  +G F ++ +  IG
Sbjct: 115 IPFSSFRRRLDYQPPGQDMSGTLDLDNIDSIHFMYANNKSGKFVVDNIKLIG 166


>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1
           {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 196

 Score = 26.9 bits (59), Expect = 0.59
 Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 56  IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGI-EYDPNHTEE 114
           +PF  F+  +   +  ++   +      + +  V +         D + +  +D N+  +
Sbjct: 1   LPFLGFYHMANAALNRLRQQANLRDFYDVIVEEVRR-----MTGFDRVMLYRFDENNHGD 55

Query: 115 FAYE 118
              E
Sbjct: 56  VIAE 59


>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa
          constant domain, CL-kappa {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 107

 Score = 23.9 bits (51), Expect = 4.5
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 15 VGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEG 48
          + + YP +  V WK + S   + ++ + +D +  
Sbjct: 29 LNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK 62


>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma
           constant domain 3, CH3-gamma {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 102

 Score = 23.8 bits (51), Expect = 4.9
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 15  VGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKFFLQSKGRI----- 69
           V   YP++  V W+ N    +++  T     ++G       +   K   Q          
Sbjct: 28  VKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVM 87

Query: 70  -QDIQNPLDTDRIS 82
            + + N      +S
Sbjct: 88  HEALHNHYTQKSLS 101


>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 91

 Score = 23.0 bits (49), Expect = 7.6
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 15 VGDVYPNETKVIWKFNESTLDDWIVTTDSDHN 46
              YP E K  +  N         +T  + +
Sbjct: 24 AFSFYPPELKFRFLRNGLASGSGNCSTGPNGD 55


>d1j83a_ b.18.1.12 (A:) Endo-1,4-beta glucanase EngF {Clostridium
          cellulovorans [TaxId: 1493]}
          Length = 180

 Score = 23.8 bits (51), Expect = 8.6
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 23 TKVIWKFNESTLDDWIVTTDS 43
          +   W FN+ T   + V  DS
Sbjct: 9  SSGFWDFNDGTTQGFGVNPDS 29


>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda
          constant domain, CL-lambda {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 102

 Score = 23.0 bits (49), Expect = 9.6
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 15 VGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEG 48
          + D YP    V WK + S +   + TT       
Sbjct: 29 ISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN 62


>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo
          sapiens), beta-chain [TaxId: 9606]}
          Length = 127

 Score = 23.2 bits (49), Expect = 9.9
 Identities = 6/37 (16%), Positives = 12/37 (32%)

Query: 15 VGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEGLSK 51
              YP+  ++ W  N   +   + T      E  + 
Sbjct: 29 ATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPAL 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 495,466
Number of extensions: 20005
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 14
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.3 bits)