BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6918
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUZ|A Chain A, Crystal Structure Of Gnpnat1
pdb|2HUZ|B Chain B, Crystal Structure Of Gnpnat1
pdb|2O28|A Chain A, Crystal Structure Of Gnpnat1
pdb|2O28|B Chain B, Crystal Structure Of Gnpnat1
pdb|3CXQ|A Chain A, Crystal Structure Of Human Glucosamine 6-Phosphate N-
Acetyltransferase 1 Bound To Glcn6p
pdb|3CXS|A Chain A, Crystal Structure Of Human Gna1
Length = 184
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 12 HFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYR 71
F + F MK S DY VTV+ED Q++ T +LI+E KFIH CA +G++E+VVV D R
Sbjct: 70 QFMKSFEHMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECR 129
Query: 72 GKEXXXXXXXXXXXXXXHFQCYKLTLDCADHMIPFYETFGFQ-KKNNFM 119
GK+ CYK+TL+C + FY+ FG+ + N+M
Sbjct: 130 GKQLGKLLLSTLTLLSKKLNCYKITLECLPQNVGFYKKFGYTVSEENYM 178
>pdb|3CXP|A Chain A, Crystal Structure Of Human Glucosamine 6-Phosphate N-
Acetyltransferase 1 Mutant E156a
Length = 184
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 12 HFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYR 71
F + F MK S DY VTV+ED Q++ T +LI+E KFIH CA +G++E+VVV D R
Sbjct: 70 QFMKSFEHMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECR 129
Query: 72 GKEXXXXXXXXXXXXXXHFQCYKLTLDCADHMIPFYETFGFQ-KKNNFM 119
GK+ CYK+TL C + FY+ FG+ + N+M
Sbjct: 130 GKQLGKLLLSTLTLLSKKLNCYKITLACLPQNVGFYKKFGYTVSEENYM 178
>pdb|4AG7|A Chain A, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Coenzyme A Adduct
pdb|4AG7|B Chain B, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Coenzyme A Adduct
pdb|4AG9|A Chain A, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Ternary Complex With Coenzyme A And Glcnac
pdb|4AG9|B Chain B, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Ternary Complex With Coenzyme A And Glcnac
Length = 165
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 13 FAERFHRMKAS-QDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYR 71
F +RF M+ S +Y + VIED+ +++V+ + SL++E KFIH +G++E+VVVD R
Sbjct: 54 FEKRFEAMRTSVPNYHIVVIEDSNSQKVVASASLVVEMKFIHGAGSRGRVEDVVVDTEMR 113
Query: 72 GKEXXXXXXXXXXXXXXHFQCYKLTLDCADHMIPFYETFGFQKKNNFM 119
++ YK++L+C ++PFY FGFQ NFM
Sbjct: 114 RQKLGAVLLKTLVSLGKSLGVYKISLECVPELLPFYSQFGFQDDCNFM 161
>pdb|3T90|A Chain A, Crystal Structure Of Glucosamine-6-Phosphate
N-Acetyltransferase From Arabidopsis Thaliana
Length = 149
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 12 HFAERFHRMKA-SQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTY 70
F RF +++ D+++ VIE+ + ++ TGS+++E+KF+ C G IE+VVVD +
Sbjct: 36 EFDRRFEEIRSYGDDHVICVIEEETSGKIAATGSVMIEKKFLRNCGKAGHIEDVVVDSRF 95
Query: 71 RGKEXXXXXXXXXXXXXXHFQCYKLTLDCADHMIPFYETFGFQKKNNFMQIYF 123
RGK+ CYK+ LDC+ FYE G K+ M YF
Sbjct: 96 RGKQLGKKVVEFLMDHCKSMGCYKVILDCSVENKVFYEKCGMSNKSIQMSKYF 148
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%)
Query: 26 YLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKEXXXXXXXXXXX 85
Y VI D RT+ V TG++I+E+K IHE L G IE++ V+ Y+G+
Sbjct: 64 YNPMVIVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLGKLLIDQLVT 123
Query: 86 XXXHFQCYKLTLDCADHMIPFYETFGFQKKNNFMQI 121
+ CYK+ LDC + + FYE GF MQI
Sbjct: 124 IGFDYGCYKIILDCDEKNVKFYEKCGFSNAGVEMQI 159
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%)
Query: 26 YLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKEXXXXXXXXXXX 85
Y VI D RT+ V TG++I+E+K IHE L G IE++ V+ Y+G+
Sbjct: 63 YNPMVIVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLGKLLIDQLVT 122
Query: 86 XXXHFQCYKLTLDCADHMIPFYETFGFQKKNNFMQI 121
+ CYK+ LDC + + FYE GF MQI
Sbjct: 123 IGFDYGCYKIILDCDEKNVKFYEKCGFSNAGVEMQI 158
>pdb|1I21|A Chain A, Crystal Structure Of Yeast Gna1
pdb|1I21|B Chain B, Crystal Structure Of Yeast Gna1
pdb|1I21|M Chain M, Crystal Structure Of Yeast Gna1
pdb|1I21|N Chain N, Crystal Structure Of Yeast Gna1
pdb|1I21|X Chain X, Crystal Structure Of Yeast Gna1
pdb|1I21|Y Chain Y, Crystal Structure Of Yeast Gna1
Length = 159
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%)
Query: 26 YLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKEXXXXXXXXXXX 85
Y VI D RT+ V TG++I+E+K IHE L G IE++ V+ Y+G+
Sbjct: 62 YNPXVIVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLGKLLIDQLVT 121
Query: 86 XXXHFQCYKLTLDCADHMIPFYETFGFQKKNNFMQI 121
+ CYK+ LDC + + FYE GF QI
Sbjct: 122 IGFDYGCYKIILDCDEKNVKFYEKCGFSNAGVEXQI 157
>pdb|2VXK|A Chain A, Structural Comparison Between Aspergillus Fumigatus And
Human Gna1
pdb|2VEZ|A Chain A, Afgna1 Crystal Structure Complexed With Acetyl-Coa And
Glucose-6p Gives New Insights Into Catalysis
Length = 190
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 9 NVFHFAERFHRMKASQD-YLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVD 67
N + R+ ++A D Y + V+ D + ++GTGSL++E+KFIH + G IE++ V+
Sbjct: 76 NEEQWNSRYEWIRARSDEYYLLVVCDGEGR-IVGTGSLVVERKFIHSLGMVGHIEDIAVE 134
Query: 68 DTYRGKEXXXXXXXXXXXXXXHFQCYKLTLDCADHMIPFYETFGFQKKNNFMQIYF 123
+GK+ CYK LDC++ FY GF++ M Y+
Sbjct: 135 KGQQGKKLGLRIIQALDYVAEKVGCYKTILDCSEANEGFYIKCGFKRAGLEMAHYY 190
>pdb|3FB3|A Chain A, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3FB3|B Chain B, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3I3G|A Chain A, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
pdb|3I3G|B Chain B, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
Length = 161
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 36 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKEXXXXXXXXXXXXXXHFQCYKL 95
T +++G+ SL+++ KF G IE+VVVD +YRG CYK+
Sbjct: 74 TGRIVGSASLMIQPKFTRGGRAVGHIEDVVVDPSYRGAGLGKALIMDLCEISRSKGCYKV 133
Query: 96 TLDCADHMIPFYETFGFQKKNNFMQI 121
LD ++ +PFYE GF+ M++
Sbjct: 134 ILDSSEKSLPFYEKLGFRAHERQMRL 159
>pdb|3S6F|A Chain A, Crystal Structure Of A Hypotetical Acetyltransferase
(Dr_1678) From Deinococcus Radiodurans At 1.19 A
Resolution
Length = 145
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 93 YKLTLDCADHMIPFYETFGFQKKN-NFMQIY 122
Y + L C D ++PFYE G ++ N F++ Y
Sbjct: 106 YXVDLSCDDDVVPFYERLGLKRANAXFLRRY 136
>pdb|3S4K|A Chain A, Structure Of A Putative Esterase Rv1847MT1895 FROM
MYCOBACTERIUM Tuberculosis
pdb|3S4K|B Chain B, Structure Of A Putative Esterase Rv1847MT1895 FROM
MYCOBACTERIUM Tuberculosis
Length = 144
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 10 VFHFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILE 48
V+ AE HR + Q +LVT+ +D T +V+ G + L+
Sbjct: 102 VYGTAEPLHRGRRQQLWLVTITDD--TDRVVARGQVRLQ 138
>pdb|1B6B|A Chain A, Melatonin Biosynthesis: The Structure Of Serotonin N-
Acetyltransferase At 2.5 A Resolution Suggests A
Catalytic Mechanism
pdb|1B6B|B Chain B, Melatonin Biosynthesis: The Structure Of Serotonin N-
Acetyltransferase At 2.5 A Resolution Suggests A
Catalytic Mechanism
Length = 174
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 94 KLTLDCADHMIPFYETFGFQKKN 116
+ L C D ++PFY+ FGF
Sbjct: 128 RAVLMCEDALVPFYQRFGFHPAG 150
>pdb|1IB1|E Chain E, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|F Chain F, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|G Chain G, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|H Chain H, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
Length = 200
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 94 KLTLDCADHMIPFYETFGFQKKN 116
+ L C D ++PFY+ FGF
Sbjct: 154 RAVLMCEDALVPFYQRFGFHPAG 176
>pdb|1KUV|A Chain A, X-Ray Crystallographic Studies Of Serotonin
N-Acetyltransferase Catalysis And Inhibition
pdb|1KUX|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
pdb|1KUY|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
Length = 207
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 94 KLTLDCADHMIPFYETFGFQKKN 116
+ L C D ++PFY+ FGF
Sbjct: 155 RAVLMCEDALVPFYQRFGFHPAG 177
>pdb|1CJW|A Chain A, Serotonin N-Acetyltransferase Complexed With A Bisubstrate
Analog
Length = 166
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 94 KLTLDCADHMIPFYETFGFQKKN 116
+ L C D ++PFY+ FGF
Sbjct: 126 RAVLMCEDALVPFYQRFGFHPAG 148
>pdb|1L0C|A Chain A, Investigation Of The Roles Of Catalytic Residues In
Serotonin N- Acetyltransferase
Length = 207
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 94 KLTLDCADHMIPFYETFGFQKKN 116
+ L C D ++PF++ FGF
Sbjct: 155 RAVLMCEDALVPFFQRFGFHPAG 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,081,920
Number of Sequences: 62578
Number of extensions: 92975
Number of successful extensions: 263
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 16
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)