RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6918
(123 letters)
>gnl|CDD|178308 PLN02706, PLN02706, glucosamine 6-phosphate N-acetyltransferase.
Length = 150
Score = 116 bits (293), Expect = 1e-34
Identities = 48/112 (42%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 13 FAERFHRMKASQDY-LVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYR 71
F RF + + D L+ VIED + ++I TGS+ +E+KFI C G IE+VVVD R
Sbjct: 39 FEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAAR 98
Query: 72 GKELGKLLIAVLVKLAKHFQCYKLTLDCADHMIPFYETFGFQKKNNFMQIYF 123
GK LGK +I L + A+ CYK+ LDC++ FYE G+ +K M YF
Sbjct: 99 GKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGYVRKEIQMVKYF 150
>gnl|CDD|140351 PTZ00330, PTZ00330, acetyltransferase; Provisional.
Length = 147
Score = 92.6 bits (230), Expect = 3e-25
Identities = 38/107 (35%), Positives = 62/107 (57%)
Query: 15 ERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKE 74
E+ + + V + T++++GT SL +E KF G IE+VVVD +YRG+
Sbjct: 39 EQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQG 98
Query: 75 LGKLLIAVLVKLAKHFQCYKLTLDCADHMIPFYETFGFQKKNNFMQI 121
LG+ LI+ L ++A+ CYK+ LDC + M+ FY+ GF+ M++
Sbjct: 99 LGRALISDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRACERQMRL 145
>gnl|CDD|216007 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 80
Score = 53.8 bits (130), Expect = 7e-11
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 38 QVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTL 97
+++G SL + + + IE + VD YRGK +G L+ L + A+ ++ L
Sbjct: 6 ELVGFASLSIIDEEGNVAE----IEGLAVDPEYRGKGIGTALLEALEEYARELGLKRIEL 61
Query: 98 DCADH---MIPFYETFGFQ 113
+ + I YE GF+
Sbjct: 62 EVLEDNEAAIALYEKLGFK 80
>gnl|CDD|222185 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 79
Score = 43.3 bits (103), Expect = 7e-07
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 24 QDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVL 83
+ V D +++G L + + I V VD YRG+ G L+ L
Sbjct: 1 KKEHFLVAYDD--GEIVGFLRLRPIGEGAY-------IGGVAVDPEYRGQGYGSKLLRHL 51
Query: 84 VKLAKHFQCYKLTLDCADHMIPFYETFGFQK 114
++ + L FYE GF+
Sbjct: 52 LEELGEKPLF---LFAHPQAKKFYEKLGFEP 79
>gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes
that characteristically catalyze the transfer of an
acyl group to a substrate. NAT (N-Acyltransferase) is
a large superfamily of enzymes that mostly catalyze the
transfer of an acyl group to a substrate and are
implicated in a variety of functions, ranging from
bacterial antibiotic resistance to circadian rhythms in
mammals. Members include GCN5-related
N-Acetyltransferases (GNAT) such as Aminoglycoside
N-acetyltransferases, Histone N-acetyltransferase (HAT)
enzymes, and Serotonin N-acetyltransferase, which
catalyze the transfer of an acetyl group to a
substrate. The kinetic mechanism of most GNATs involves
the ordered formation of a ternary complex: the
reaction begins with Acetyl Coenzyme A (AcCoA) binding,
followed by binding of substrate, then direct transfer
of the acetyl group from AcCoA to the substrate,
followed by product and subsequent CoA release. Other
family members include Arginine/ornithine
N-succinyltransferase, Myristoyl-CoA: protein
N-myristoyltransferase, and Acyl-homoserinelactone
synthase which have a similar catalytic mechanism but
differ in types of acyl groups transferred.
Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB
nonribosomal peptidyltransferases which catalyze
similar peptidyltransferase reactions are also
included.
Length = 65
Score = 38.4 bits (90), Expect = 4e-05
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 38 QVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTL 97
+++G SL + I ++ V YRGK +G L+ + A+ +L L
Sbjct: 9 EIVGFASLSPDGSGGDT----AYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64
Query: 98 D 98
+
Sbjct: 65 E 65
>gnl|CDD|225064 COG2153, ElaA, Predicted acyltransferase [General function
prediction only].
Length = 155
Score = 36.5 bits (85), Expect = 8e-04
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 57 LKGKIEEVVVDDTYRGKELG-KLLIAVLVKLAKHFQCYKLTLDCADHMIPFYETFGFQK 114
+ I V+V RG+ LG +L+ L + + + L H+ FY +FGF +
Sbjct: 75 EEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYASFGFVR 133
>gnl|CDD|233477 TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase.
Members of this model belong to the GCN5-related
N-acetyltransferase (GNAT) superfamily. This model
covers prokarotes and the archaea. The seed contains a
characterized accession for Gram negative E. coli. An
untraceable characterized accession (PIR|S66013) for
Gram positive B. subtilis scores well (205.0) in the
full alignment. Characterized members are lacking in the
archaea. Noise cutoff (72.4) was set to exclude M. loti
paralog of rimI. Trusted cutoff (80.0) was set at next
highest scoring member in the mini-database [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 131
Score = 36.2 bits (84), Expect = 0.001
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 18/95 (18%)
Query: 25 DYLVTVIEDTRTKQVIG--TGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAV 82
YL+ I +V+G ++L E I + V Y+G+ +G+ L+
Sbjct: 32 CYLLARIGG----KVVGYAGVQIVL-----DE----AHILNIAVKPEYQGQGIGRALLRE 78
Query: 83 LVKLAKHFQCYKLTLDCA---DHMIPFYETFGFQK 114
L+ AK ++ L+ Y+ GF +
Sbjct: 79 LIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNE 113
>gnl|CDD|182373 PRK10314, PRK10314, putative acyltransferase; Provisional.
Length = 153
Score = 35.2 bits (81), Expect = 0.003
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 61 IEEVVVDDTYRGKELGKLLIA-VLVKLAKHFQCYKLTLDCADHMIPFYETFGF 112
I V+V + RG+++G+ L++ L +H+ + L H+ FY++FGF
Sbjct: 77 IGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQSFGF 129
>gnl|CDD|224168 COG1247, COG1247, Sortase and related acyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 169
Score = 33.4 bits (77), Expect = 0.011
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 13 FAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVV-VDDTYR 71
A F + Y V V E +V+G S F A + +E + +D R
Sbjct: 40 RAAWFSG-RTRDGYPVVVAE-EEDGKVLGYASA---GPFRERPAYRHTVELSIYLDPAAR 94
Query: 72 GKELGKLLIAVLVKLAKHFQCYKLTLDCADH----MIPFYETFGFQK 114
GK LGK L+ L+ A+ + + + I +E GF++
Sbjct: 95 GKGLGKKLLQALITEAR-ALGVRELVAGIESDNLASIALHEKLGFEE 140
>gnl|CDD|223532 COG0456, RimI, Acetyltransferases [General function prediction
only].
Length = 177
Score = 33.8 bits (77), Expect = 0.011
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 58 KGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDCADH----MIPFYETFGFQ 113
+G I + VD YRG+ +G+ L+ ++ + + I Y GF+
Sbjct: 91 EGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFE 150
Query: 114 K 114
Sbjct: 151 V 151
>gnl|CDD|224167 COG1246, ArgA, N-acetylglutamate synthase and related
acetyltransferases [Amino acid transport and
metabolism].
Length = 153
Score = 33.1 bits (76), Expect = 0.014
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 29 TVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEE---VVVDDTYRGKELGKLLIAVLVK 85
T+IE R +VIG +L L+ + E + V YRG G+ L+ L+
Sbjct: 43 TIIE--RDGKVIGCAAL--------HPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLA 92
Query: 86 LAKHFQCYKLTLDCADHMIPFYETFGFQ 113
A+ +L + F+ GF
Sbjct: 93 DARELGIKELFV-LTTRSPEFFAERGFT 119
>gnl|CDD|222309 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 118
Score = 29.2 bits (66), Expect = 0.24
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 70 YRGKELGKLLIAVLVKLA-KHFQCYKLTLDCADHMIPFYETFGF 112
YRG+ +G+ L+ + A K + LT + + PFY GF
Sbjct: 77 YRGRGIGRALLDAIEAEARKGIKR--LTTEASLLARPFYLRLGF 118
>gnl|CDD|236088 PRK07757, PRK07757, acetyltransferase; Provisional.
Length = 152
Score = 29.4 bits (67), Expect = 0.32
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 24 QDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALK-GKIEEVVVDDTYRGKELGKLLIAV 82
+D+ V E +++G +L H +I + V + YRG+ +G++L+
Sbjct: 41 RDFYVAEEEG----EIVGCCAL-------HILWEDLAEIRSLAVSEDYRGQGIGRMLVEA 89
Query: 83 LVKLAKHFQCYK---LTLDCADHMIPFYETFGFQ 113
++ A+ + LT F+E GF+
Sbjct: 90 CLEEARELGVKRVFALTYQ-----PEFFEKLGFR 118
>gnl|CDD|182510 PRK10514, PRK10514, putative acetyltransferase; Provisional.
Length = 145
Score = 28.4 bits (64), Expect = 0.72
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 51 FIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDCADH---MIPFY 107
+ G +E + VD RG +G++L+ + L +LT D + + FY
Sbjct: 66 LLSG----GHMEALFVDPDVRGCGVGRMLVEHALSLHP-----ELTTDVNEQNEQAVGFY 116
Query: 108 ETFGFQ 113
+ GF+
Sbjct: 117 KKMGFK 122
>gnl|CDD|152729 pfam12294, DUF3626, Protein of unknown function (DUF3626). This
family of proteins is found in bacteria. Proteins in
this family are typically between 294 and 374 amino
acids in length.
Length = 297
Score = 28.5 bits (64), Expect = 0.83
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 52 IH-ECALKGKIEEVVVDDTYRGKELGKLLIAVLVK--LAKHFQCYKLTLDCAD 101
IH +L IE +V D +++G +G+ L + + + + C L D
Sbjct: 181 IHGPVSLAEDIEALVADPSFKGTPIGRSLNELCERYGIDLQWHC-GFRLAVDD 232
>gnl|CDD|218349 pfam04958, AstA, Arginine N-succinyltransferase beta subunit.
Arginine N-succinyltransferase EC:2.3.1.109 catalyzes
the transfer of succinyl-CoA to arginine to produce
succinylarginine. This is the first step in arginine
catabolism by the arginine succinyltransferase pathway.
Length = 337
Score = 27.5 bits (62), Expect = 2.0
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 45/93 (48%)
Query: 24 QDYLVTVIEDTRTKQVIGTGSLI-----------------------LEQKFIHE------ 54
+ YL V+EDT T +V+GT + L E
Sbjct: 56 EGYLF-VLEDTETGEVVGTSGIEAAVGLDEPFYSYRLSTLVHASRELGVHNRVEVLTLCN 114
Query: 55 --------CALKGKIEEVVVDDTYRGKELGKLL 79
C L +D YR G+LL
Sbjct: 115 DLTGSSELCTL-------FLDPEYRKGGNGRLL 140
>gnl|CDD|225695 COG3153, COG3153, Predicted acetyltransferase [General function
prediction only].
Length = 171
Score = 26.9 bits (60), Expect = 2.5
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 66 VDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDCADHMIPFYETFGFQK 114
VD Y+G+ +G L+ ++ + + + +Y FGF+
Sbjct: 83 VDPEYQGQGIGSALVREGLEALRLAGASAVVVL---GDPTYYSRFGFEP 128
>gnl|CDD|222196 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 152
Score = 26.5 bits (59), Expect = 2.7
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 65 VVDDTYRGKELGKLLIAVLVKLAKH---FQCYKLTLDCADH-MIPFYETFGFQK 114
V + +RGK + + L+ Q D + MI E GF+K
Sbjct: 85 VGEPRFRGKGFTRAWLRSLIHYLFLDPRTQRVVGEPDVDNKRMIALLERAGFRK 138
>gnl|CDD|182099 PRK09831, PRK09831, putative acyltransferase; Provisional.
Length = 147
Score = 26.5 bits (58), Expect = 2.8
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 15/104 (14%)
Query: 20 MKASQDYLVTVI------EDTRTKQVIGTG----SLILEQKFIHECALKGKIEEVVVDDT 69
M ASQ Y I +++R K+ + ++I Q ++ I+ + VD
Sbjct: 24 MTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFITCIEHYIDMLFVDPE 83
Query: 70 YRGKELGKLLIAVLVKLAKHFQCYKLTLDCADHMIPFYETFGFQ 113
Y + + L+ L+K +LT+D + PF+E +GFQ
Sbjct: 84 YTRRGVASALLKPLIK-----SESELTVDASITAKPFFERYGFQ 122
>gnl|CDD|236500 PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.
Length = 891
Score = 26.3 bits (59), Expect = 5.4
Identities = 9/15 (60%), Positives = 9/15 (60%), Gaps = 3/15 (20%)
Query: 102 HMIPF---YETFGFQ 113
MIPF Y FGFQ
Sbjct: 594 PMIPFYIYYSMFGFQ 608
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit
alpha; Validated.
Length = 275
Score = 25.9 bits (57), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 93 YKLTLDCADHMIPFY---ETFGFQKK 115
Y L L C D+ +PFY ETF F +
Sbjct: 201 YLLALACHDNGVPFYVAAETFKFHPE 226
>gnl|CDD|234149 TIGR03245, arg_AOST_alph, arginine/ornithine succinyltransferase,
alpha subunit. In some bacteria, including Pseudomonas
aeruginosa, the astB gene (arginine
N-succinyltransferase) is replaced by tandem paralogs
that form a heterodimer. This heterodimer from P.
aeruginosa is characterized as arginine and ornithine
N-2 succinyltransferase (AOST). Members of this protein
family represent the less widespread paralog,
designated AruI, or arginine/ornithine
succinyltransferase, alpha subunit.
Length = 336
Score = 25.9 bits (57), Expect = 7.3
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 23 SQDYLVTVIEDTRTKQVIGTGSLI 46
++ + V+EDT T +++GT S++
Sbjct: 53 GEERYLFVLEDTETGKLLGTSSIV 76
>gnl|CDD|223180 COG0102, RplM, Ribosomal protein L13 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 25.3 bits (56), Expect = 7.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 62 EEVVVDDTYRGKELGKL--LIAVLVKLAKHFQCYKLTLDCADHMI 104
+ V+D GK LG+L +A + KH Y +D D++I
Sbjct: 14 KWYVIDAE--GKVLGRLASEVAKRL-RGKHKPTYTPHVDTGDYVI 55
>gnl|CDD|132287 TIGR03243, arg_catab_AOST, arginine and ornithine
succinyltransferase subunits. In many bacteria, the
sole member of this protein family is arginine
N-succinyltransferase (EC 2.3.1.109), the AstA protein
of the arginine succinyltransferase (ast) pathway.
However, in Pseudomonas aeruginosa and several other
species, a tandem gene pair encodes alpha and beta
subunits of a heterodimer that is designated arginine
and ornithine succinyltransferase (AOST).
Length = 335
Score = 25.3 bits (56), Expect = 9.8
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 20 MKASQDYLVTVIEDTRTKQVIGT 42
+ + YL V+EDT T V G
Sbjct: 50 TRGEEGYLF-VLEDTETGTVAGV 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.412
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,158,664
Number of extensions: 541298
Number of successful extensions: 535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 32
Length of query: 123
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 38
Effective length of database: 7,167,512
Effective search space: 272365456
Effective search space used: 272365456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)