BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6919
(638 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUZ|A Chain A, Crystal Structure Of Gnpnat1
pdb|2HUZ|B Chain B, Crystal Structure Of Gnpnat1
pdb|2O28|A Chain A, Crystal Structure Of Gnpnat1
pdb|2O28|B Chain B, Crystal Structure Of Gnpnat1
pdb|3CXQ|A Chain A, Crystal Structure Of Human Glucosamine 6-Phosphate N-
Acetyltransferase 1 Bound To Glcn6p
pdb|3CXS|A Chain A, Crystal Structure Of Human Gna1
Length = 184
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%)
Query: 11 HFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYR 70
F + F MK S DY VTV+ED Q++ T +LI+E KFIH CA +G++E+VVV D R
Sbjct: 70 QFMKSFEHMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECR 129
Query: 71 GKEXXXXXXXXXXXXXXHFQCYKLTLD 97
GK+ CYK+TL+
Sbjct: 130 GKQLGKLLLSTLTLLSKKLNCYKITLE 156
>pdb|3CXP|A Chain A, Crystal Structure Of Human Glucosamine 6-Phosphate N-
Acetyltransferase 1 Mutant E156a
Length = 184
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%)
Query: 11 HFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYR 70
F + F MK S DY VTV+ED Q++ T +LI+E KFIH CA +G++E+VVV D R
Sbjct: 70 QFMKSFEHMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECR 129
Query: 71 GKEXXXXXXXXXXXXXXHFQCYKLTL 96
GK+ CYK+TL
Sbjct: 130 GKQLGKLLLSTLTLLSKKLNCYKITL 155
>pdb|1WNL|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Adp
pdb|1WNL|B Chain B, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Adp
pdb|1WQ7|A Chain A, Crystal Structure Of Biotin-(acetyl-coa-carboxylase)
Ligase From Pyrococcus Horikoshii Ot3
pdb|1WQ7|B Chain B, Crystal Structure Of Biotin-(acetyl-coa-carboxylase)
Ligase From Pyrococcus Horikoshii Ot3
pdb|1WQW|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5-Amp
pdb|1WQW|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5-Amp
pdb|1X01|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Atp
pdb|1X01|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Atp
pdb|2DKG|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp,
Pyrophosphate And Mg(2+)
pdb|2DKG|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp,
Pyrophosphate And Mg(2+)
pdb|2DTH|A Chain A, The Crystal Structure Of The Orthorhombic Form Of Biotin
Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex
With Biotin And Adp
pdb|2DTH|B Chain B, The Crystal Structure Of The Orthorhombic Form Of Biotin
Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex
With Biotin And Adp
pdb|2DTI|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp,
Pyrophosphate And Mn(2+)
pdb|2DTI|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp,
Pyrophosphate And Mn(2+)
Length = 235
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 113/251 (45%), Gaps = 41/251 (16%)
Query: 375 LNTKKLGQLVIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFS 434
L T +G+ VIY ++S++ L G ++ +QT G GR N W SP G S
Sbjct: 4 LKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTMGHGRLNRKWESPEGGLWLS 63
Query: 435 MQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIV 494
+ L + K LP I + A+ +V +K F+ ID IKWPND+ VN K+ G++V
Sbjct: 64 IVLSPKVPQ---KDLPKIVFLGAVGVVETLKEFS--IDGRIKWPNDVLVNYK-KIAGVLV 117
Query: 495 TSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQ 554
E + +G+G+N++N P + PLLS F + +L++
Sbjct: 118 --------EGKGDKIVLGIGLNVNNKVPNGATSMKLELGSEVPLLS---VFRSLITNLDR 166
Query: 555 LMEGDFDEIYDLYYKHWLHNNVNV--TVVSERGEAQQVKIIG----------IDDFGFLN 602
L Y ++L N +++ V +VKI+G IDDFG L
Sbjct: 167 L------------YLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLI 214
Query: 603 VRSEEGYIFSV 613
+R + G + V
Sbjct: 215 IRLDSGEVKKV 225
>pdb|1WPY|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Biotin
pdb|1WPY|B Chain B, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Biotin
pdb|2FYK|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Adp And Biotin
pdb|2FYK|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Adp And Biotin
pdb|2DTO|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 Complexed With Atp And Biotin
pdb|2DTO|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 Complexed With Atp And Biotin
Length = 235
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 112/251 (44%), Gaps = 41/251 (16%)
Query: 375 LNTKKLGQLVIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFS 434
L T +G+ VIY ++S++ L G ++ +QT G GR N W SP G S
Sbjct: 4 LKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTXGHGRLNRKWESPEGGLWLS 63
Query: 435 MQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIV 494
+ L + K LP I + A+ +V +K F+ ID IKWPND+ VN K+ G++V
Sbjct: 64 IVLSPKVPQ---KDLPKIVFLGAVGVVETLKEFS--IDGRIKWPNDVLVNYK-KIAGVLV 117
Query: 495 TSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQ 554
E + +G+G+N++N P + PLLS F + +L++
Sbjct: 118 --------EGKGDKIVLGIGLNVNNKVPNGATSXKLELGSEVPLLS---VFRSLITNLDR 166
Query: 555 LMEGDFDEIYDLYYKHWLHNNVNV--TVVSERGEAQQVKIIG----------IDDFGFLN 602
L Y ++L N ++ V +VKI+G IDDFG L
Sbjct: 167 L------------YLNFLKNPXDILNLVRDNXILGVRVKILGDGSFEGIAEDIDDFGRLI 214
Query: 603 VRSEEGYIFSV 613
+R + G + V
Sbjct: 215 IRLDSGEVKKV 225
>pdb|2DVE|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation
Arg51ala
pdb|2DVE|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation
Arg51ala
pdb|2E10|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R51a
pdb|2E10|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R51a
Length = 235
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 113/251 (45%), Gaps = 41/251 (16%)
Query: 375 LNTKKLGQLVIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFS 434
L T +G+ VIY ++S++ L G ++ +QT G GR N W SP G S
Sbjct: 4 LKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTMGHGRLNAKWESPEGGLWLS 63
Query: 435 MQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIV 494
+ L + K LP I + A+ +V +K F+ ID IKWPND+ VN K+ G++V
Sbjct: 64 IVLSPKVPQ---KDLPKIVFLGAVGVVETLKEFS--IDGRIKWPNDVLVNYK-KIAGVLV 117
Query: 495 TSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQ 554
E + +G+G+N++N P + PLLS F + +L++
Sbjct: 118 --------EGKGDKIVLGIGLNVNNKVPNGATSMKLELGSEVPLLS---VFRSLITNLDR 166
Query: 555 LMEGDFDEIYDLYYKHWLHNNVNV--TVVSERGEAQQVKIIG----------IDDFGFLN 602
L Y ++L N +++ V +VKI+G IDDFG L
Sbjct: 167 L------------YLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLI 214
Query: 603 VRSEEGYIFSV 613
+R + G + V
Sbjct: 215 IRLDSGEVKKV 225
>pdb|2DJZ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a
Mutation
pdb|2DJZ|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a
Mutation
pdb|2HNI|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111a Mutation
pdb|2HNI|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111a Mutation
Length = 235
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 41/251 (16%)
Query: 375 LNTKKLGQLVIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFS 434
L T +G+ VIY ++S++ L G ++ +QT G GR N W SP G S
Sbjct: 4 LKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTMGHGRLNRKWESPEGGLWLS 63
Query: 435 MQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIV 494
+ L + K LP I + A+ +V +K F+ ID IKWPND+ VN + G++V
Sbjct: 64 IVLSPKVPQ---KDLPKIVFLGAVGVVETLKEFS--IDGRIKWPNDVLVNYKA-IAGVLV 117
Query: 495 TSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQ 554
E + +G+G+N++N P + PLLS F + +L++
Sbjct: 118 --------EGKGDKIVLGIGLNVNNKVPNGATSMKLELGSEVPLLS---VFRSLITNLDR 166
Query: 555 LMEGDFDEIYDLYYKHWLHNNVNV--TVVSERGEAQQVKIIG----------IDDFGFLN 602
L Y ++L N +++ V +VKI+G IDDFG L
Sbjct: 167 L------------YLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLI 214
Query: 603 VRSEEGYIFSV 613
+R + G + V
Sbjct: 215 IRLDSGEVKKV 225
>pdb|2DEQ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g
Mutation
pdb|2DEQ|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g
Mutation
pdb|2E1H|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111g Mutation
pdb|2E1H|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111g Mutation
Length = 235
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 41/251 (16%)
Query: 375 LNTKKLGQLVIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFS 434
L T +G+ VIY ++S++ L G ++ +QT G GR N W SP G S
Sbjct: 4 LKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTMGHGRLNRKWESPEGGLWLS 63
Query: 435 MQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIV 494
+ L + K LP I + A+ +V +K F+ ID IKWPND+ VN + G++V
Sbjct: 64 IVLSPKVPQ---KDLPKIVFLGAVGVVETLKEFS--IDGRIKWPNDVLVNYK-GIAGVLV 117
Query: 495 TSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQ 554
E + +G+G+N++N P + PLLS F + +L++
Sbjct: 118 --------EGKGDKIVLGIGLNVNNKVPNGATSMKLELGSEVPLLS---VFRSLITNLDR 166
Query: 555 LMEGDFDEIYDLYYKHWLHNNVNV--TVVSERGEAQQVKIIG----------IDDFGFLN 602
L Y ++L N +++ V +VKI+G IDDFG L
Sbjct: 167 L------------YLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLI 214
Query: 603 VRSEEGYIFSV 613
+R + G + V
Sbjct: 215 IRLDSGEVKKV 225
>pdb|2DXU|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a
pdb|2DXU|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a
pdb|2DZC|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R48a
pdb|2DZC|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R48a
pdb|2EJG|A Chain A, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|B Chain B, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 235
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 41/251 (16%)
Query: 375 LNTKKLGQLVIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFS 434
L T +G+ VIY ++S++ L G ++ +QT G G N W SP G S
Sbjct: 4 LKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTMGHGALNRKWESPEGGLWLS 63
Query: 435 MQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIV 494
+ L + K LP I + A+ +V +K F+ ID IKWPND+ VN K+ G++V
Sbjct: 64 IVLSPKVPQ---KDLPKIVFLGAVGVVETLKEFS--IDGRIKWPNDVLVNYK-KIAGVLV 117
Query: 495 TSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQ 554
E + +G+G+N++N P + PLLS F + +L++
Sbjct: 118 --------EGKGDKIVLGIGLNVNNKVPNGATSMKLELGSEVPLLS---VFRSLITNLDR 166
Query: 555 LMEGDFDEIYDLYYKHWLHNNVNV--TVVSERGEAQQVKIIG----------IDDFGFLN 602
L Y ++L N +++ V +VKI+G IDDFG L
Sbjct: 167 L------------YLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLI 214
Query: 603 VRSEEGYIFSV 613
+R + G + V
Sbjct: 215 IRLDSGEVKKV 225
>pdb|2DXT|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Atp And Biotin, Mutation D104a
pdb|2DXT|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Atp And Biotin, Mutation D104a
pdb|2DZ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation
D104a
pdb|2DZ9|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation
D104a
pdb|2E65|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, Mutation D104a
pdb|2E65|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, Mutation D104a
Length = 235
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 41/251 (16%)
Query: 375 LNTKKLGQLVIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFS 434
L T +G+ VIY ++S++ L G ++ +QT G GR N W SP G S
Sbjct: 4 LKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTMGHGRLNRKWESPEGGLWLS 63
Query: 435 MQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIV 494
+ L + K LP I + A+ +V +K F+ ID IKWPN + VN K+ G++V
Sbjct: 64 IVLSPKVPQ---KDLPKIVFLGAVGVVETLKEFS--IDGRIKWPNAVLVNYK-KIAGVLV 117
Query: 495 TSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQ 554
E + +G+G+N++N P + PLLS F + +L++
Sbjct: 118 --------EGKGDKIVLGIGLNVNNKVPNGATSMKLELGSEVPLLS---VFRSLITNLDR 166
Query: 555 LMEGDFDEIYDLYYKHWLHNNVNV--TVVSERGEAQQVKIIG----------IDDFGFLN 602
L Y ++L N +++ V +VKI+G IDDFG L
Sbjct: 167 L------------YLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLI 214
Query: 603 VRSEEGYIFSV 613
+R + G + V
Sbjct: 215 IRLDSGEVKKV 225
>pdb|2E41|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With The Reaction Product Analog
Biotinol-5'-Amp, Mutations R48a And K111a
pdb|2E41|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With The Reaction Product Analog
Biotinol-5'-Amp, Mutations R48a And K111a
pdb|2E64|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutations R48a And K111a
pdb|2E64|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutations R48a And K111a
pdb|2ZGW|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Adenosine And Biotin,
Mutations R48a And K111a
pdb|2ZGW|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Adenosine And Biotin,
Mutations R48a And K111a
pdb|2EJF|A Chain A, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|B Chain B, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
Length = 235
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 41/251 (16%)
Query: 375 LNTKKLGQLVIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFS 434
L T +G+ VIY ++S++ L G ++ +QT G G N W SP G S
Sbjct: 4 LKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTMGHGALNRKWESPEGGLWLS 63
Query: 435 MQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIV 494
+ L + K LP I + A+ +V +K F+ ID IKWPND+ VN + G++V
Sbjct: 64 IVLSPKVPQ---KDLPKIVFLGAVGVVETLKEFS--IDGRIKWPNDVLVNYKA-IAGVLV 117
Query: 495 TSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQ 554
E + +G+G+N++N P + PLLS F + +L++
Sbjct: 118 --------EGKGDKIVLGIGLNVNNKVPNGATSMKLELGSEVPLLS---VFRSLITNLDR 166
Query: 555 LMEGDFDEIYDLYYKHWLHNNVNV--TVVSERGEAQQVKIIG----------IDDFGFLN 602
L Y ++L N +++ V +VKI+G IDDFG L
Sbjct: 167 L------------YLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLI 214
Query: 603 VRSEEGYIFSV 613
+R + G + V
Sbjct: 215 IRLDSGEVKKV 225
>pdb|3T90|A Chain A, Crystal Structure Of Glucosamine-6-Phosphate
N-Acetyltransferase From Arabidopsis Thaliana
Length = 149
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 12 FAERFHRMKA-SQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYR 70
F RF +++ D+++ VIE+ + ++ TGS+++E+KF+ C G IE+VVVD +R
Sbjct: 37 FDRRFEEIRSYGDDHVICVIEEETSGKIAATGSVMIEKKFLRNCGKAGHIEDVVVDSRFR 96
Query: 71 GKEXXXXXXXXXXXXXXHFQCYKLTLDFS 99
GK+ CYK+ LD S
Sbjct: 97 GKQLGKKVVEFLMDHCKSMGCYKVILDCS 125
>pdb|4AG7|A Chain A, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Coenzyme A Adduct
pdb|4AG7|B Chain B, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Coenzyme A Adduct
pdb|4AG9|A Chain A, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Ternary Complex With Coenzyme A And Glcnac
pdb|4AG9|B Chain B, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Ternary Complex With Coenzyme A And Glcnac
Length = 165
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 12 FAERFHRMKAS-QDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYR 70
F +RF M+ S +Y + VIED+ +++V+ + SL++E KFIH +G++E+VVVD R
Sbjct: 54 FEKRFEAMRTSVPNYHIVVIEDSNSQKVVASASLVVEMKFIHGAGSRGRVEDVVVDTEMR 113
Query: 71 GKEXXXXXXXXXXXXXXHFQCYKLTLD 97
++ YK++L+
Sbjct: 114 RQKLGAVLLKTLVSLGKSLGVYKISLE 140
>pdb|1I21|A Chain A, Crystal Structure Of Yeast Gna1
pdb|1I21|B Chain B, Crystal Structure Of Yeast Gna1
pdb|1I21|M Chain M, Crystal Structure Of Yeast Gna1
pdb|1I21|N Chain N, Crystal Structure Of Yeast Gna1
pdb|1I21|X Chain X, Crystal Structure Of Yeast Gna1
pdb|1I21|Y Chain Y, Crystal Structure Of Yeast Gna1
Length = 159
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 40/78 (51%)
Query: 20 KASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKEXXXXXX 79
K Y VI D RT+ V TG++I+E+K IHE L G IE++ V+ Y+G+
Sbjct: 57 KKIXQYNPXVIVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLGKLLI 116
Query: 80 XXXXXXXXHFQCYKLTLD 97
+ CYK+ LD
Sbjct: 117 DQLVTIGFDYGCYKIILD 134
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 29 VIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKEXXXXXXXXXXXXXXH 88
VI D RT+ V TG++I+E+K IHE L G IE++ V+ Y+G+
Sbjct: 67 VIVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLGKLLIDQLVTIGFD 126
Query: 89 FQCYKLTLD 97
+ CYK+ LD
Sbjct: 127 YGCYKIILD 135
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 29 VIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKEXXXXXXXXXXXXXXH 88
VI D RT+ V TG++I+E+K IHE L G IE++ V+ Y+G+
Sbjct: 68 VIVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLGKLLIDQLVTIGFD 127
Query: 89 FQCYKLTLD 97
+ CYK+ LD
Sbjct: 128 YGCYKIILD 136
>pdb|2VXK|A Chain A, Structural Comparison Between Aspergillus Fumigatus And
Human Gna1
pdb|2VEZ|A Chain A, Afgna1 Crystal Structure Complexed With Acetyl-Coa And
Glucose-6p Gives New Insights Into Catalysis
Length = 190
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 8 NVFHFAERFHRMKASQD-YLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVD 66
N + R+ ++A D Y + V+ D + ++GTGSL++E+KFIH + G IE++ V+
Sbjct: 76 NEEQWNSRYEWIRARSDEYYLLVVCDGEGR-IVGTGSLVVERKFIHSLGMVGHIEDIAVE 134
Query: 67 DTYRGKEXXXXXXXXXXXXXXHFQCYKLTLDFS 99
+GK+ CYK LD S
Sbjct: 135 KGQQGKKLGLRIIQALDYVAEKVGCYKTILDCS 167
>pdb|3RIR|A Chain A, Crystal Strucrture Of Biotin Protein Ligase From S. Aureus
pdb|3RKW|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
pdb|3RKX|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
pdb|3RKY|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
Length = 323
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Query: 408 VIPRQQTQGTGRSNNIWLSPPGCAMF-SMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKS 466
++ +QT+G GR N W S G ++ S+ L ++ + L +A+ I A++
Sbjct: 111 ILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLF---IALGIRDAIQH 167
Query: 467 FNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGM-----NLDNS- 520
F+QD ++ +KWPND+Y++ N K+ G + T + + + +C IG+ + N D S
Sbjct: 168 FSQD-EVKVKWPNDIYID-NGKVCGFL-TEMVANNDGIEAIICGIGINLTQQLENFDESI 224
Query: 521 -QPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQLMEGDFDEIYDLYYKHWLHNNVNVT 579
T + + N E+ + Q + F EI + Y + N N T
Sbjct: 225 RHRATSI-QLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEY--NAASNIWNRT 281
Query: 580 VVSERGEAQ-QVKIIGIDDFGFLNVRSEEG 608
++ + Q + + I +D G+L VR E G
Sbjct: 282 LLFTENDKQFKGQAIDLDYDGYLIVRDEAG 311
>pdb|3V7R|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Inhibitor
pdb|3V8J|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase
pdb|3V8K|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Biotin
pdb|3V8L|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Biotinyl-5'-Amp
Length = 329
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 408 VIPRQQTQGTGRSNNIWLSPPGCAMF-SMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKS 466
++ +QT+G GR N W S G ++ S+ L ++ + L +A+ I A++
Sbjct: 117 ILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLF---IALGIRDAIQH 173
Query: 467 FNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGM-----NLDNS- 520
F+QD ++ +KWPND+Y++ N K+ G + T + + + +C IG+ + N D S
Sbjct: 174 FSQD-EVKVKWPNDIYID-NGKVCGFL-TEMVANNDGIEAIICGIGINLTQQLENFDESI 230
Query: 521 -QPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQLMEGDFDEIYDLYYKHWLHNNVNVT 579
T + + N E+ + Q + F EI + Y N N T
Sbjct: 231 RHRATSI-QLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYIA--ASNIWNRT 287
Query: 580 VVSERGEAQ-QVKIIGIDDFGFLNVRSEEG 608
++ + Q + + I +D G+L VR E G
Sbjct: 288 LLFTENDKQFKGQAIDLDYDGYLIVRDEAG 317
>pdb|3V7C|A Chain A, Cystal Structure Of Sabpl In Complex With Inhibitor
pdb|3V7S|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Inhibitor 0364
Length = 329
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 408 VIPRQQTQGTGRSNNIWLSPPGCAMF-SMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKS 466
++ +QT+G GR N W S G ++ S+ L ++ + L +A+ I A++
Sbjct: 111 ILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLF---IALGIRDAIQH 167
Query: 467 FNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGM-----NLDNS- 520
F+QD ++ +KWPND+Y++ N K+ G + T + + + +C IG+ + N D S
Sbjct: 168 FSQD-EVKVKWPNDIYID-NGKVCGFL-TEMVANNDGIEAIICGIGINLTQQLENFDESI 224
Query: 521 -QPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQLMEGDFDEIYDLYYKHWLHNNVNVT 579
T + + N E+ + Q + F EI + Y N N T
Sbjct: 225 RHRATSI-QLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYIA--ASNIWNRT 281
Query: 580 VVSERGEAQ-QVKIIGIDDFGFLNVRSEEG 608
++ + Q + + I +D G+L VR E G
Sbjct: 282 LLFTENDKQFKGQAIDLDYDGYLIVRDEAG 311
>pdb|4DQ2|A Chain A, Structure Of Staphylococcus Aureus Biotin Protein Ligase
In Complex With Biotinol-5'-Amp
Length = 328
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 408 VIPRQQTQGTGRSNNIWLSPPGCAMF-SMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKS 466
++ +QT+G GR N W S G ++ S+ L ++ + L +A+ I A++
Sbjct: 110 ILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLF---IALGIRDAIQH 166
Query: 467 FNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGM-----NLDNS- 520
F+QD ++ +KWPND+Y++ N K+ G + T + + + +C IG+ + N D S
Sbjct: 167 FSQD-EVKVKWPNDIYID-NGKVCGFL-TEMVANNDGIEAIICGIGINLTQQLENFDESI 223
Query: 521 -QPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQLMEGDFDEIYDLYYKHWLHNNVNVT 579
T + + N E+ + Q + F EI + Y N N T
Sbjct: 224 RHRATSI-QLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYIA--ASNIWNRT 280
Query: 580 VVSERGEAQ-QVKIIGIDDFGFLNVRSEEG 608
++ + Q + + I +D G+L VR E G
Sbjct: 281 LLFTENDKQFKGQAIDLDYDGYLIVRDEAG 310
>pdb|2EJ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From
Methanococcus Jannaschii
Length = 237
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 408 VIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSF 467
V+ +Q G GR +W S G FSM L L + +I +V I I+ +K++
Sbjct: 29 VLADKQNNGKGRWGRVWYSDEGGLYFSMVLDSKLYNP-----KVINLLVPICIIEVLKNY 83
Query: 468 NQDIDLGIKWPNDLYVNGN---VKLGGIIVTSSILSTFESQMAVCNIGVGMNLDN 519
D +LG+K+PND+ V N KLGG IL+ + IG+G+N++N
Sbjct: 84 -VDKELGLKFPNDIMVKVNDNYKKLGG------ILTELTDDYMI--IGIGINVNN 129
>pdb|1HXD|A Chain A, Crystal Structure Of E. Coli Biotin Repressor With Bound
Biotin
pdb|1HXD|B Chain B, Crystal Structure Of E. Coli Biotin Repressor With Bound
Biotin
pdb|2EWN|A Chain A, Ecoli Biotin Repressor With Co-repressor Analog
pdb|2EWN|B Chain B, Ecoli Biotin Repressor With Co-repressor Analog
pdb|1BIA|A Chain A, The E. Coli Biotin Holoenzyme Synthetase(Slash)bio
Repressor Crystal Structure Delineates The Biotin And
Dna- Binding Domains
pdb|1BIB|A Chain A, The E. Coli Biotin Holoenzyme Synthetase(Slash)bio
Repressor Crystal Structure Delineates The Biotin And
Dna- Binding Domains
Length = 321
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 366 FNVDEYYRHLNTKK-LGQL-----VIYSGVMSSSHNVLDG-PTLLHGLTVIPRQQTQGTG 418
+++ E + LN K+ LGQL + + S++ +LD L G I Q G G
Sbjct: 58 YSLPEPIQLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRG 117
Query: 419 RSNNIWLSPPGCAMF-SMQLHIDLKSQLGKHLPLIQHIVAISIVLA--VKSFNQDIDLGI 475
R W SP G ++ SM ++ L L+ I IV+A ++ D + +
Sbjct: 118 RRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLV-----IGIVMAEVLRKLGAD-KVRV 171
Query: 476 KWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNL 517
KWPNDLY+ + KL GI+V L+ A IG G+N+
Sbjct: 172 KWPNDLYLQ-DRKLAGILVE---LTGKTGDAAQIVIGAGINM 209
>pdb|3FB3|A Chain A, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3FB3|B Chain B, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3I3G|A Chain A, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
pdb|3I3G|B Chain B, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
Length = 161
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKEXXXXXXXXXXXXXXHFQCYKL 94
T +++G+ SL+++ KF G IE+VVVD +YRG CYK+
Sbjct: 74 TGRIVGSASLMIQPKFTRGGRAVGHIEDVVVDPSYRGAGLGKALIMDLCEISRSKGCYKV 133
Query: 95 TLDFS 99
LD S
Sbjct: 134 ILDSS 138
>pdb|3EFS|A Chain A, Biotin Protein Ligase From Aquifex Aeolicus In Complex
With Biotin And Atp
pdb|3EFS|B Chain B, Biotin Protein Ligase From Aquifex Aeolicus In Complex
With Biotin And Atp
pdb|3FJP|A Chain A, Apo Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
pdb|3FJP|B Chain B, Apo Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
Length = 233
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 384 VIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKS 443
+I+ + S+ L + +G ++ +QT+G GR WLS G FS L+
Sbjct: 5 LIWLKEVDSTQERLKEWNVSYGTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLN----P 60
Query: 444 QLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFE 503
+ ++L + ++ +S+ A++ + I +KWPND+Y S +L
Sbjct: 61 KEFENLLQLPLVLGLSVSEALEEITE-IPFSLKWPNDVYFQEK-------KVSGVLRELS 112
Query: 504 SQMAVCNIGVGMN 516
+ IG+ +N
Sbjct: 113 KDKLIVGIGINVN 125
>pdb|2EAY|A Chain A, Crystal Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
pdb|2EAY|B Chain B, Crystal Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
Length = 233
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 384 VIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKS 443
+I+ + S+ L + +G ++ +QT+G GR WLS G FS L+
Sbjct: 5 LIWLKEVDSTQERLKEWNVSYGTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLN----P 60
Query: 444 QLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFE 503
+ ++L + ++ +S+ A++ + I +KWPND+Y S +L
Sbjct: 61 KEFENLLQLPLVLGLSVSEALEEITE-IPFSLKWPNDVYFQEK-------KVSGVLCELS 112
Query: 504 SQMAVCNIGVGMN 516
+ IG+ +N
Sbjct: 113 KDKLIVGIGINVN 125
>pdb|3EFR|A Chain A, Biotin Protein Ligase R40g Mutant From Aquifex Aeolicus In
Complex With Biotin
pdb|3EFR|B Chain B, Biotin Protein Ligase R40g Mutant From Aquifex Aeolicus In
Complex With Biotin
Length = 233
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 384 VIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKS 443
+I+ + S+ L + +G ++ +QT+G G WLS G FS L+
Sbjct: 5 LIWLKEVDSTQERLKEWNVSYGTALVADRQTKGRGGLGRKWLSQEGGLYFSFLLN----P 60
Query: 444 QLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFE 503
+ ++L + ++ +S+ A++ + I +KWPND+Y S +L
Sbjct: 61 KEFENLLQLPLVLGLSVSEALEEITE-IPFSLKWPNDVYFQEK-------KVSGVLRELS 112
Query: 504 SQMAVCNIGVGMN 516
+ IG+ +N
Sbjct: 113 KDKLIVGIGINVN 125
>pdb|3GJA|A Chain A, Cytc3
pdb|3GJA|B Chain B, Cytc3
pdb|3GJB|A Chain A, Cytc3 With Fe(Ii) And Alpha-Ketoglutarate
pdb|3GJB|B Chain B, Cytc3 With Fe(Ii) And Alpha-Ketoglutarate
Length = 319
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 354 YMPILVNEAPSDFNVDEYYRHLNTKKLGQLVIYSGVMSSSHNVLDGPTLLHGLTVIPRQ 412
Y+P V P N+ EY +N +K G V+ SGV HN + T G +PRQ
Sbjct: 260 YVPTQVQVYPGTENLTEYGDGINLEKYG-AVLTSGVDEYGHNRI-ARTSQRGYEFVPRQ 316
>pdb|3L1A|A Chain A, Structural Ordering Of Disordered Ligand Binding Loops Of
Biotin Protein Ligase Into Active Conformations As A
Consequence Of Dehydration
pdb|3L1A|B Chain B, Structural Ordering Of Disordered Ligand Binding Loops Of
Biotin Protein Ligase Into Active Conformations As A
Consequence Of Dehydration
pdb|3L2Z|A Chain A, Crystal Structure Of Hydrated Biotin Protein Ligase From
M. Tuberculosis
pdb|3L2Z|B Chain B, Crystal Structure Of Hydrated Biotin Protein Ligase From
M. Tuberculosis
Length = 266
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 474 GIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNL 517
G+KWPND+ G KL GI+ E +GVG+N+
Sbjct: 125 GLKWPNDVLARGG-KLAGILA--------EVAQPFVVLGVGLNV 159
>pdb|3RUX|A Chain A, Crystal Structure Of Biotin-Protein Ligase Bira From
Mycobacterium Tuberculosis In Complex With An
Acylsulfamide Bisubstrate Inhibitor
pdb|3RUX|B Chain B, Crystal Structure Of Biotin-Protein Ligase Bira From
Mycobacterium Tuberculosis In Complex With An
Acylsulfamide Bisubstrate Inhibitor
Length = 270
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 474 GIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNL 517
G+KWPND+ G KL GI+ E +GVG+N+
Sbjct: 129 GLKWPNDVLARGG-KLAGILA--------EVAQPFVVLGVGLNV 163
>pdb|2CGH|A Chain A, Crystal Structure Of Biotin Ligase From Mycobacterium
Tuberculosis
pdb|2CGH|B Chain B, Crystal Structure Of Biotin Ligase From Mycobacterium
Tuberculosis
Length = 268
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 474 GIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNL 517
G+KWPND+ G KL GI+ E +GVG+N+
Sbjct: 127 GLKWPNDVLARGG-KLAGILA--------EVAQPFVVLGVGLNV 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,342,970
Number of Sequences: 62578
Number of extensions: 681200
Number of successful extensions: 2112
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2066
Number of HSP's gapped (non-prelim): 35
length of query: 638
length of database: 14,973,337
effective HSP length: 105
effective length of query: 533
effective length of database: 8,402,647
effective search space: 4478610851
effective search space used: 4478610851
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)