Query psy6919
Match_columns 638
No_of_seqs 515 out of 2850
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 21:47:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1536|consensus 100.0 4.8E-58 1E-62 491.2 26.1 412 169-631 216-649 (649)
2 COG0340 BirA Biotin-(acetyl-Co 100.0 1.4E-50 3E-55 411.1 22.7 226 387-623 1-238 (238)
3 PRK06955 biotin--protein ligas 100.0 6.9E-50 1.5E-54 420.4 28.7 251 364-622 15-295 (300)
4 TIGR00121 birA_ligase birA, bi 100.0 9.6E-50 2.1E-54 406.3 24.7 224 384-621 2-237 (237)
5 PRK08330 biotin--protein ligas 100.0 2.6E-48 5.6E-53 395.6 26.4 224 380-623 1-236 (236)
6 PTZ00275 biotin-acetyl-CoA-car 100.0 2.5E-47 5.3E-52 398.0 26.1 233 380-621 15-282 (285)
7 PRK11886 bifunctional biotin-- 100.0 6.4E-47 1.4E-51 401.3 29.4 251 353-622 55-317 (319)
8 PRK13325 bifunctional biotin-- 100.0 1.2E-46 2.5E-51 426.3 28.2 260 351-625 54-327 (592)
9 PTZ00276 biotin/lipoate protei 100.0 1.5E-45 3.1E-50 377.2 23.7 222 380-616 5-242 (245)
10 PRK08477 biotin--protein ligas 100.0 5.9E-44 1.3E-48 356.5 22.9 196 383-604 2-203 (211)
11 PRK05935 biotin--protein ligas 100.0 9E-37 1.9E-41 300.5 17.0 160 385-555 6-174 (190)
12 PF03099 BPL_LplA_LipB: Biotin 99.8 7.5E-21 1.6E-25 173.8 7.5 121 386-516 1-125 (125)
13 KOG3396|consensus 99.7 1.4E-16 3.1E-21 145.7 10.8 103 6-110 33-141 (150)
14 PHA00673 acetyltransferase dom 99.5 8.1E-14 1.8E-18 132.8 11.9 97 10-110 40-143 (154)
15 PLN02706 glucosamine 6-phospha 99.4 1.1E-12 2.4E-17 123.1 13.5 107 5-113 32-144 (150)
16 PRK10146 aminoalkylphosphonic 99.3 8.2E-12 1.8E-16 115.8 10.7 98 9-111 31-136 (144)
17 PTZ00330 acetyltransferase; Pr 99.3 5.6E-11 1.2E-15 110.5 12.7 102 7-112 33-140 (147)
18 PF00583 Acetyltransf_1: Acety 99.2 5.3E-11 1.2E-15 99.9 9.1 72 35-109 4-83 (83)
19 COG0456 RimI Acetyltransferase 99.1 7.9E-10 1.7E-14 105.9 12.4 109 22-143 52-174 (177)
20 PF13673 Acetyltransf_10: Acet 99.1 4.8E-10 1E-14 100.0 9.7 81 13-108 32-117 (117)
21 KOG3139|consensus 99.1 8E-10 1.7E-14 104.8 10.7 86 25-116 56-149 (165)
22 TIGR01575 rimI ribosomal-prote 99.1 8E-10 1.7E-14 99.8 9.9 82 24-116 30-119 (131)
23 KOG3216|consensus 99.0 9.3E-10 2E-14 103.3 9.9 91 21-114 48-147 (163)
24 PF09825 BPL_N: Biotin-protein 99.0 5.2E-10 1.1E-14 120.5 8.8 117 159-295 195-317 (367)
25 PF13527 Acetyltransf_9: Acety 99.0 3.7E-09 8E-14 96.1 12.5 81 26-110 42-126 (127)
26 PHA01807 hypothetical protein 99.0 1.7E-09 3.7E-14 103.7 10.6 93 7-103 35-135 (153)
27 PF13508 Acetyltransf_7: Acety 99.0 2.5E-09 5.4E-14 90.0 9.8 71 25-109 3-78 (79)
28 TIGR03827 GNAT_ablB putative b 99.0 2.2E-09 4.9E-14 111.4 11.6 84 24-116 157-248 (266)
29 PRK07757 acetyltransferase; Pr 99.0 1.9E-09 4.2E-14 101.3 10.0 77 27-113 43-122 (152)
30 PRK03624 putative acetyltransf 99.0 2.6E-09 5.5E-14 97.4 10.4 80 22-112 42-129 (140)
31 PRK10975 TDP-fucosamine acetyl 99.0 4.2E-09 9E-14 103.9 12.3 81 26-115 102-190 (194)
32 TIGR03103 trio_acet_GNAT GNAT- 99.0 3.5E-09 7.6E-14 120.7 13.0 107 23-132 121-235 (547)
33 PRK07922 N-acetylglutamate syn 99.0 1.9E-09 4E-14 104.7 8.9 78 26-112 46-126 (169)
34 TIGR02382 wecD_rffC TDP-D-fuco 99.0 2.6E-09 5.6E-14 105.2 10.1 74 35-116 107-188 (191)
35 PRK10314 putative acyltransfer 99.0 2.1E-09 4.6E-14 102.7 8.8 72 35-112 56-133 (153)
36 COG1247 Sortase and related ac 98.9 6.4E-09 1.4E-13 100.8 11.7 104 6-116 34-146 (169)
37 PF13420 Acetyltransf_4: Acety 98.9 7E-09 1.5E-13 97.4 11.6 101 7-116 32-142 (155)
38 cd02169 Citrate_lyase_ligase C 98.9 2.6E-09 5.7E-14 112.7 9.4 74 24-112 5-83 (297)
39 PRK10140 putative acetyltransf 98.9 9.6E-09 2.1E-13 96.8 11.8 87 23-116 49-144 (162)
40 TIGR02406 ectoine_EctA L-2,4-d 98.9 4.9E-09 1.1E-13 100.3 9.9 80 26-112 40-127 (157)
41 KOG3397|consensus 98.8 1.3E-08 2.9E-13 97.1 9.9 138 33-188 63-206 (225)
42 PLN02825 amino-acid N-acetyltr 98.8 9E-09 1.9E-13 115.8 9.6 78 27-113 409-490 (515)
43 PRK09491 rimI ribosomal-protei 98.8 1.2E-08 2.6E-13 95.4 9.0 73 35-116 48-128 (146)
44 PRK12308 bifunctional arginino 98.8 1.4E-08 2.9E-13 117.5 9.2 77 26-112 504-583 (614)
45 PF02237 BPL_C: Biotin protein 98.8 2.3E-08 4.9E-13 77.3 7.4 48 573-621 1-48 (48)
46 TIGR01890 N-Ac-Glu-synth amino 98.8 2.3E-08 5.1E-13 110.8 9.5 78 27-113 324-405 (429)
47 PRK05279 N-acetylglutamate syn 98.7 2.9E-08 6.2E-13 110.5 9.3 78 27-113 336-417 (441)
48 PF13523 Acetyltransf_8: Acety 98.7 1.5E-07 3.2E-12 88.6 12.8 90 21-114 44-142 (152)
49 TIGR03585 PseH pseudaminic aci 98.7 1.5E-07 3.3E-12 88.3 12.4 102 5-116 31-141 (156)
50 COG1246 ArgA N-acetylglutamate 98.7 2.8E-08 6.1E-13 94.2 7.0 75 27-110 42-120 (153)
51 COG3153 Predicted acetyltransf 98.7 2E-07 4.4E-12 90.6 12.6 84 24-112 45-130 (171)
52 TIGR00124 cit_ly_ligase [citra 98.7 9.9E-08 2.1E-12 102.3 10.6 76 26-116 32-112 (332)
53 PRK15130 spermidine N1-acetylt 98.7 2.8E-07 6E-12 89.8 12.8 96 12-116 44-148 (186)
54 PRK01346 hypothetical protein; 98.6 2E-07 4.3E-12 102.5 12.4 83 27-113 49-136 (411)
55 PRK09831 putative acyltransfer 98.6 9E-08 2E-12 90.0 8.3 69 27-115 55-128 (147)
56 PRK10809 ribosomal-protein-S5- 98.6 2.9E-07 6.2E-12 90.4 11.6 95 16-116 66-169 (194)
57 TIGR03448 mycothiol_MshD mycot 98.6 1.4E-07 3E-12 98.5 9.2 81 27-113 200-288 (292)
58 PRK10514 putative acetyltransf 98.6 2.2E-07 4.8E-12 86.3 9.4 87 8-115 34-128 (145)
59 PRK10151 ribosomal-protein-L7/ 98.6 9.4E-07 2E-11 85.5 13.8 101 7-116 46-158 (179)
60 TIGR01686 FkbH FkbH-like domai 98.6 2.7E-07 6E-12 98.5 10.5 67 35-110 242-318 (320)
61 PRK13688 hypothetical protein; 98.5 3.4E-07 7.4E-12 88.1 8.9 81 25-114 45-134 (156)
62 KOG3234|consensus 98.5 3.4E-07 7.4E-12 86.6 8.0 101 27-143 43-152 (173)
63 cd04301 NAT_SF N-Acyltransfera 98.4 1E-06 2.3E-11 67.8 8.1 59 35-97 7-65 (65)
64 TIGR03448 mycothiol_MshD mycot 98.4 1.3E-06 2.8E-11 91.2 9.2 72 27-112 48-127 (292)
65 PRK10562 putative acetyltransf 98.3 3.8E-06 8.3E-11 78.5 10.2 69 26-113 49-125 (145)
66 PF13302 Acetyltransf_3: Acety 98.3 6.4E-06 1.4E-10 75.6 11.4 95 8-109 36-142 (142)
67 KOG3235|consensus 98.3 3.6E-06 7.9E-11 79.8 9.3 105 26-145 42-156 (193)
68 COG2153 ElaA Predicted acyltra 98.2 3.4E-06 7.3E-11 79.1 7.5 81 24-112 49-135 (155)
69 TIGR01211 ELP3 histone acetylt 98.2 5.3E-06 1.2E-10 93.9 9.2 83 29-113 416-516 (522)
70 KOG2488|consensus 98.2 6.1E-06 1.3E-10 80.5 8.1 71 35-110 101-179 (202)
71 PF08445 FR47: FR47-like prote 98.0 3.4E-05 7.5E-10 66.7 9.8 54 57-113 21-82 (86)
72 PF13718 GNAT_acetyltr_2: GNAT 98.0 2.2E-05 4.9E-10 78.1 9.3 97 8-112 14-175 (196)
73 PF14542 Acetyltransf_CG: GCN5 97.9 4.3E-05 9.2E-10 65.1 8.0 58 35-100 7-64 (78)
74 COG3393 Predicted acetyltransf 97.9 6.1E-05 1.3E-09 77.4 9.7 74 35-116 185-265 (268)
75 COG1670 RimL Acetyltransferase 97.7 0.00018 4E-09 68.3 9.3 76 36-116 77-161 (187)
76 KOG3138|consensus 97.7 4.8E-05 1E-09 75.1 5.0 77 57-145 89-175 (187)
77 COG2388 Predicted acetyltransf 97.4 0.00038 8.3E-09 62.0 6.5 68 26-102 16-83 (99)
78 COG1444 Predicted P-loop ATPas 97.2 0.0013 2.8E-08 77.0 10.3 92 19-114 464-592 (758)
79 COG0454 WecD Histone acetyltra 97.2 0.00014 3E-09 60.3 1.5 44 63-108 87-130 (156)
80 COG3981 Predicted acetyltransf 97.2 0.0021 4.6E-08 62.2 9.1 84 10-98 43-138 (174)
81 PF12568 DUF3749: Acetyltransf 97.1 0.0028 6E-08 58.8 8.9 74 24-110 37-122 (128)
82 PF13480 Acetyltransf_6: Acety 96.8 0.018 3.8E-07 52.6 11.8 84 6-98 52-135 (142)
83 COG3053 CitC Citrate lyase syn 96.8 0.0063 1.4E-07 63.4 9.0 73 24-111 36-113 (352)
84 COG4552 Eis Predicted acetyltr 96.6 0.0044 9.6E-08 66.1 6.6 93 13-113 29-127 (389)
85 PF12746 GNAT_acetyltran: GNAT 96.4 0.024 5.2E-07 59.3 10.7 79 35-134 173-258 (265)
86 KOG4144|consensus 95.7 0.007 1.5E-07 57.7 2.7 58 54-113 98-161 (190)
87 COG3818 Predicted acetyltransf 95.5 0.029 6.2E-07 52.2 5.8 56 56-113 83-148 (167)
88 PF06852 DUF1248: Protein of u 95.2 0.13 2.9E-06 50.8 9.8 86 25-112 45-136 (181)
89 KOG4135|consensus 95.1 0.13 2.9E-06 48.8 9.0 71 38-110 84-167 (185)
90 PF13880 Acetyltransf_13: ESCO 93.7 0.06 1.3E-06 45.0 3.0 26 60-85 8-33 (70)
91 COG1243 ELP3 Histone acetyltra 93.6 0.05 1.1E-06 60.2 3.0 45 66-112 459-508 (515)
92 PRK13834 putative autoinducer 93.0 0.42 9.1E-06 48.3 8.4 79 28-109 56-161 (207)
93 PF05301 Mec-17: Touch recepto 92.7 0.62 1.4E-05 42.9 8.3 62 24-85 3-74 (120)
94 TIGR03694 exosort_acyl putativ 92.5 0.28 6.1E-06 50.6 6.6 73 35-109 65-194 (241)
95 PF04377 ATE_C: Arginine-tRNA- 92.0 1.4 3.1E-05 41.2 9.9 71 35-127 47-117 (128)
96 PF04958 AstA: Arginine N-succ 92.0 0.79 1.7E-05 49.7 9.4 58 24-81 58-145 (342)
97 PF00765 Autoind_synth: Autoin 91.9 0.8 1.7E-05 45.3 8.7 81 26-110 46-152 (182)
98 COG2401 ABC-type ATPase fused 91.5 0.17 3.7E-06 55.7 3.7 52 57-110 241-305 (593)
99 PRK10456 arginine succinyltran 90.5 0.84 1.8E-05 49.4 7.8 73 8-80 32-142 (344)
100 COG3375 Uncharacterized conser 90.4 1.5 3.3E-05 44.6 8.9 104 15-130 37-144 (266)
101 TIGR03244 arg_catab_AstA argin 90.4 0.89 1.9E-05 49.1 7.9 73 8-80 30-140 (336)
102 PF01853 MOZ_SAS: MOZ/SAS fami 90.4 0.86 1.9E-05 45.3 7.1 49 37-91 66-114 (188)
103 KOG2535|consensus 89.6 0.27 5.8E-06 52.6 3.1 44 67-112 497-546 (554)
104 PF01233 NMT: Myristoyl-CoA:pr 89.4 4.9 0.00011 39.1 11.2 81 16-97 65-150 (162)
105 TIGR03243 arg_catab_AOST argin 89.4 0.95 2.1E-05 48.8 7.1 73 8-80 30-140 (335)
106 TIGR03245 arg_AOST_alph argini 88.8 1.1 2.4E-05 48.4 7.1 73 8-80 30-141 (336)
107 PF08444 Gly_acyl_tr_C: Aralky 87.6 0.9 1.9E-05 39.9 4.5 48 35-92 7-54 (89)
108 PLN03238 probable histone acet 86.8 1.7 3.8E-05 45.8 6.8 50 35-90 139-188 (290)
109 PRK01305 arginyl-tRNA-protein 85.0 8.6 0.00019 39.8 10.9 71 35-127 152-222 (240)
110 PRK14348 lipoate-protein ligas 84.5 15 0.00032 37.7 12.2 123 418-555 79-217 (221)
111 TIGR03019 pepcterm_femAB FemAB 84.2 5.1 0.00011 42.9 9.3 94 5-110 177-278 (330)
112 KOG2696|consensus 81.8 2 4.4E-05 46.6 4.9 59 37-97 199-258 (403)
113 PF01423 LSM: LSM domain ; In 81.4 3.6 7.8E-05 33.4 5.3 33 573-605 6-38 (67)
114 TIGR00545 lipoyltrans lipoyltr 80.7 4.8 0.0001 43.5 7.5 64 420-492 73-136 (324)
115 PTZ00064 histone acetyltransfe 80.5 3.3 7.1E-05 46.8 6.1 50 35-90 368-417 (552)
116 PLN03239 histone acetyltransfe 80.5 3.6 7.7E-05 44.6 6.2 50 35-90 197-246 (351)
117 cd04264 DUF619-NAGS DUF619 dom 80.1 6.5 0.00014 35.2 6.8 53 37-98 18-70 (99)
118 COG5628 Predicted acetyltransf 79.7 5.5 0.00012 36.9 6.2 51 35-87 45-95 (143)
119 cd01731 archaeal_Sm1 The archa 78.6 5.3 0.00011 32.9 5.4 34 573-606 8-41 (68)
120 cd00600 Sm_like The eukaryotic 77.8 4.8 0.0001 32.1 4.9 32 574-605 5-36 (63)
121 PF14563 DUF4444: Domain of un 77.1 9.8 0.00021 28.6 5.7 31 574-609 1-31 (42)
122 smart00651 Sm snRNP Sm protein 76.4 5.7 0.00012 32.2 5.0 33 573-605 6-38 (67)
123 KOG4601|consensus 76.0 7.9 0.00017 39.6 6.8 69 57-130 108-182 (264)
124 COG3882 FkbH Predicted enzyme 75.7 3.4 7.3E-05 46.6 4.4 89 15-112 448-549 (574)
125 PLN00104 MYST -like histone ac 74.7 3.7 8.1E-05 46.0 4.5 50 35-90 290-339 (450)
126 PF13444 Acetyltransf_5: Acety 74.2 6.5 0.00014 34.7 5.2 43 37-79 41-100 (101)
127 TIGR00214 lipB lipoate-protein 73.6 64 0.0014 32.2 12.4 120 418-554 50-181 (184)
128 cd06168 LSm9 The eukaryotic Sm 73.5 8.1 0.00018 32.8 5.3 33 573-605 8-40 (75)
129 cd01721 Sm_D3 The eukaryotic S 73.5 18 0.0004 30.0 7.4 34 573-606 8-41 (70)
130 PRK00737 small nuclear ribonuc 73.0 9 0.00019 32.0 5.4 33 574-606 13-45 (72)
131 COG0095 LplA Lipoate-protein l 72.9 9.2 0.0002 39.6 6.7 77 404-492 64-141 (248)
132 cd01717 Sm_B The eukaryotic Sm 72.5 7 0.00015 33.2 4.7 35 571-605 6-40 (79)
133 PRK14342 lipoate-protein ligas 72.1 59 0.0013 33.2 12.0 122 417-555 69-202 (213)
134 COG3916 LasI N-acyl-L-homoseri 71.3 18 0.0004 36.6 8.0 78 28-108 55-158 (209)
135 TIGR03827 GNAT_ablB putative b 69.7 3.7 8E-05 42.7 3.0 67 63-145 13-84 (266)
136 cd04265 DUF619-NAGS-U DUF619 d 69.6 8.3 0.00018 34.5 4.7 39 55-98 32-70 (99)
137 cd01726 LSm6 The eukaryotic Sm 68.9 12 0.00026 30.8 5.2 32 574-605 9-40 (67)
138 PF10842 DUF2642: Protein of u 68.7 25 0.00055 29.2 7.0 48 567-617 13-60 (66)
139 cd01728 LSm1 The eukaryotic Sm 68.5 11 0.00024 31.9 5.0 34 573-606 10-43 (74)
140 cd01722 Sm_F The eukaryotic Sm 67.7 13 0.00029 30.6 5.3 33 573-605 9-41 (68)
141 COG3138 AstA Arginine/ornithin 66.2 15 0.00033 38.8 6.4 71 8-78 32-140 (336)
142 KOG2747|consensus 65.3 9.8 0.00021 42.0 5.1 34 58-91 261-294 (396)
143 KOG2036|consensus 65.0 5.3 0.00012 46.8 3.1 33 57-89 614-646 (1011)
144 cd01732 LSm5 The eukaryotic Sm 64.6 29 0.00062 29.5 6.8 33 574-606 12-44 (76)
145 cd01719 Sm_G The eukaryotic Sm 64.4 15 0.00032 30.9 5.0 33 573-605 8-40 (72)
146 cd01727 LSm8 The eukaryotic Sm 63.9 14 0.0003 31.1 4.7 33 573-605 7-39 (74)
147 PRK14344 lipoate-protein ligas 63.0 1.2E+02 0.0026 31.2 12.2 121 417-554 87-219 (223)
148 PRK09618 flgD flagellar basal 62.9 77 0.0017 30.3 10.0 78 536-613 46-131 (142)
149 cd01729 LSm7 The eukaryotic Sm 59.6 18 0.00039 31.0 4.8 33 573-605 10-42 (81)
150 cd01725 LSm2 The eukaryotic Sm 59.3 34 0.00073 29.3 6.4 34 573-606 9-42 (81)
151 PRK14343 lipoate-protein ligas 58.0 1.6E+02 0.0035 30.5 12.1 122 418-555 80-217 (235)
152 COG0321 LipB Lipoate-protein l 56.3 1.8E+02 0.0038 29.9 11.8 120 418-555 76-209 (221)
153 PRK06792 flgD flagellar basal 55.7 1E+02 0.0022 30.8 9.8 75 537-612 71-156 (190)
154 cd01733 LSm10 The eukaryotic S 54.6 72 0.0016 27.2 7.6 34 573-606 17-50 (78)
155 PRK14349 lipoate-protein ligas 52.6 2.4E+02 0.0053 28.9 12.3 122 418-555 65-203 (220)
156 cd01723 LSm4 The eukaryotic Sm 52.3 81 0.0018 26.6 7.5 32 574-605 10-41 (76)
157 PRK03822 lplA lipoate-protein 51.2 44 0.00096 36.4 7.2 60 422-492 76-138 (338)
158 PRK14345 lipoate-protein ligas 49.5 2.9E+02 0.0062 28.7 12.4 120 418-555 76-214 (234)
159 KOG2779|consensus 49.5 53 0.0012 35.9 7.2 68 25-93 135-203 (421)
160 cd01724 Sm_D1 The eukaryotic S 49.0 42 0.00092 29.4 5.5 33 573-605 9-41 (90)
161 PF02736 Myosin_N: Myosin N-te 47.5 1.1E+02 0.0024 22.7 6.8 41 576-617 2-42 (42)
162 PRK11911 flgD flagellar basal 47.1 2.1E+02 0.0045 27.4 10.1 78 536-613 45-133 (140)
163 PRK14852 hypothetical protein; 46.4 33 0.00071 42.4 5.8 90 24-116 74-184 (989)
164 KOG3698|consensus 45.5 32 0.0007 39.6 5.1 48 63-112 822-877 (891)
165 PF02107 FlgH: Flagellar L-rin 44.3 41 0.00089 33.2 5.2 42 587-631 95-136 (179)
166 smart00333 TUDOR Tudor domain. 44.3 82 0.0018 24.3 6.0 47 572-618 3-50 (57)
167 PF14438 SM-ATX: Ataxin 2 SM d 44.2 77 0.0017 26.5 6.2 36 570-605 7-45 (77)
168 KOG3438|consensus 43.8 17 0.00037 32.6 2.2 43 285-328 39-81 (105)
169 PF04017 DUF366: Domain of unk 43.6 2.9E+02 0.0063 27.6 10.7 77 431-520 63-139 (183)
170 PRK12698 flgH flagellar basal 42.3 43 0.00094 34.4 5.1 42 587-631 138-179 (224)
171 COG1958 LSM1 Small nuclear rib 41.7 53 0.0011 27.8 4.8 33 573-605 15-47 (79)
172 PRK14341 lipoate-protein ligas 41.4 4E+02 0.0088 27.2 12.3 122 418-555 70-210 (213)
173 PF09465 LBR_tudor: Lamin-B re 41.3 1.6E+02 0.0036 23.6 7.0 47 572-618 6-54 (55)
174 PRK00249 flgH flagellar basal 41.0 46 0.00099 34.1 5.1 42 587-631 137-178 (222)
175 PF01287 eIF-5a: Eukaryotic el 39.9 66 0.0014 26.9 5.0 26 587-612 4-29 (69)
176 TIGR02383 Hfq RNA chaperone Hf 37.8 1.9E+02 0.0042 23.7 7.2 46 565-612 5-50 (61)
177 PF11124 Pho86: Inorganic phos 37.2 78 0.0017 33.9 6.2 62 23-88 169-230 (304)
178 PRK14639 hypothetical protein; 36.8 1.1E+02 0.0024 29.0 6.7 50 568-618 81-131 (140)
179 PF12945 YcgR_2: Flagellar pro 35.4 39 0.00084 28.4 3.1 34 573-606 2-39 (87)
180 COG5027 SAS2 Histone acetyltra 35.4 24 0.00051 38.4 2.0 46 37-88 248-293 (395)
181 PRK14638 hypothetical protein; 35.3 1E+02 0.0022 29.7 6.2 49 568-618 93-141 (150)
182 COG2935 Putative arginyl-tRNA: 34.5 1.2E+02 0.0026 31.6 6.9 78 35-140 159-236 (253)
183 PF02799 NMT_C: Myristoyl-CoA: 33.6 4.1E+02 0.0088 26.7 10.3 93 7-109 59-161 (190)
184 cd01730 LSm3 The eukaryotic Sm 33.3 81 0.0017 27.0 4.7 32 574-605 10-41 (82)
185 PRK12700 flgH flagellar basal 33.0 77 0.0017 32.7 5.3 42 587-631 145-186 (230)
186 PRK14061 unknown domain/lipoat 32.9 1.2E+02 0.0025 35.5 7.2 61 420-492 298-362 (562)
187 PRK12407 flgH flagellar basal 32.6 79 0.0017 32.4 5.3 42 587-631 135-176 (221)
188 PRK12699 flgH flagellar basal 32.1 79 0.0017 33.0 5.2 42 587-631 162-203 (246)
189 PRK00395 hfq RNA-binding prote 32.0 2.4E+02 0.0052 24.4 7.2 45 563-609 7-51 (79)
190 PRK12697 flgH flagellar basal 31.9 80 0.0017 32.5 5.1 42 587-631 141-182 (226)
191 PRK02983 lysS lysyl-tRNA synth 31.3 2E+02 0.0043 36.4 9.4 63 28-98 423-485 (1094)
192 PRK12701 flgH flagellar basal 31.3 85 0.0019 32.4 5.2 42 587-631 144-185 (230)
193 PRK12696 flgH flagellar basal 30.9 87 0.0019 32.5 5.3 42 587-631 151-192 (236)
194 PRK06009 flgD flagellar basal 30.5 3.7E+02 0.0081 25.7 9.0 76 536-614 52-134 (140)
195 PF09924 DUF2156: Uncharacteri 30.4 2.6E+02 0.0056 29.3 9.0 67 24-98 179-246 (299)
196 cd01720 Sm_D2 The eukaryotic S 30.0 1.5E+02 0.0033 25.9 5.8 35 571-605 10-44 (87)
197 PRK11625 Rho-binding antitermi 29.8 3E+02 0.0065 24.0 7.5 51 567-618 15-68 (84)
198 PRK12788 flgH flagellar basal 28.2 99 0.0021 32.0 5.1 42 587-631 149-190 (234)
199 cd01734 YlxS_C YxlS is a Bacil 27.7 1.5E+02 0.0032 25.3 5.4 50 568-618 18-74 (83)
200 COG2063 FlgH Flagellar basal b 27.7 1.3E+02 0.0027 31.2 5.6 41 587-630 148-188 (230)
201 cd04266 DUF619-NAGS-FABP DUF61 27.6 2.4E+02 0.0053 25.7 6.9 39 55-98 37-77 (108)
202 PRK14346 lipoate-protein ligas 26.2 7.5E+02 0.016 25.6 11.9 59 487-555 159-227 (230)
203 PF03614 Flag1_repress: Repres 25.6 1.4E+02 0.0029 28.9 5.0 45 570-615 115-159 (165)
204 COG2898 Uncharacterized conser 25.5 2.7E+02 0.0058 32.4 8.4 59 34-98 400-458 (538)
205 PF11061 DUF2862: Protein of u 25.0 1.8E+02 0.0039 24.1 5.0 31 588-618 28-62 (64)
206 PRK14633 hypothetical protein; 24.9 2.6E+02 0.0056 26.8 7.0 50 568-618 87-140 (150)
207 PRK02001 hypothetical protein; 24.9 2.5E+02 0.0053 27.2 6.9 36 567-602 82-117 (152)
208 PRK14636 hypothetical protein; 24.5 2.2E+02 0.0047 28.2 6.5 50 568-618 91-144 (176)
209 PF02576 DUF150: Uncharacteris 22.3 1.4E+02 0.0031 28.0 4.7 49 559-608 71-123 (141)
210 PF11095 Gemin7: Gem-associate 22.2 3.9E+02 0.0085 23.1 6.8 56 563-618 11-73 (80)
211 PF04768 DUF619: Protein of un 22.0 2.2E+02 0.0048 28.0 6.0 41 53-98 84-124 (170)
212 cd01716 Hfq Hfq, an abundant, 21.5 4.2E+02 0.0091 21.7 6.5 39 573-613 9-47 (61)
213 PRK14631 hypothetical protein; 21.4 3E+02 0.0064 27.2 6.8 51 567-617 109-164 (174)
214 COG5092 NMT1 N-myristoyl trans 21.3 3.9E+02 0.0085 29.0 7.9 80 14-93 118-201 (451)
215 KOG1784|consensus 20.9 1E+02 0.0022 27.2 3.0 33 573-605 8-40 (96)
216 cd04508 TUDOR Tudor domains ar 20.6 3.3E+02 0.0071 20.0 5.6 40 575-614 1-42 (48)
217 KOG1486|consensus 20.2 1.5E+02 0.0032 31.4 4.5 25 473-498 168-193 (364)
No 1
>KOG1536|consensus
Probab=100.00 E-value=4.8e-58 Score=491.16 Aligned_cols=412 Identities=31% Similarity=0.518 Sum_probs=296.3
Q ss_pred CCCCCcccccccccCCCCCCChHHHHHhhccCCcchHHHHHHhhhccceeEEecccccccccccchhhhhhhhhhhhhhc
Q psy6919 169 SRAPSEAYMPILVNEAPSDFNVDEYYRHLNTKKLGQLVIYSGVMSSSHNVLVSSQTSVSTLVGSSAIFIFLMVIRSQVLK 248 (638)
Q Consensus 169 ~~~~~~~~~~v~le~~p~~~~~~~~~~~L~~~~~~R~~il~~iL~~~Lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (638)
.++++..+.+=..-+..+-..+...-++||.++..|++|+..+|+. .||.|+.++..+. .
T Consensus 216 ~tgph~e~~~n~~~~~~d~l~~~~~~~~lk~dek~Rl~fl~~v~t~-~gle~~~~t~~~~-------------------~ 275 (649)
T KOG1536|consen 216 LTGPHPEFTRNSTVRQVDVLVYEGGNDSLKSDEKHRLSFLLTVLTV-SGLEAPRSTNILS-------------------N 275 (649)
T ss_pred ecCCCHHHhhhhhhhccceeccCCCcchhhhhhhhheeeehhhhhh-cccccCCccceec-------------------C
Confidence 4667777766555555555566667889999999999999999997 9999987766532 3
Q ss_pred ccccccccccChhhhHHHHHH-HHHhcCccCcceeeecceeEEEeccccccCCCcccccccccCCCCCCchhhhhhhcch
Q psy6919 249 MVYTAGYLIGHPEAKTKLLDT-ARKLYTKKTQSVVQMKKMELEFCQSAASRAPSEAYMPILVNEAPSDFNVDEYYRHLNT 327 (638)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (638)
+..+..||+-.-..-..+-.. +...+.- ++ +...++..|+-.+. .++--+++ -+|+..|+.
T Consensus 276 p~l~n~~~~~n~~~~~r~~~k~~a~~l~~--d~---k~~~sl~~~~~~s~------------~tei~d~~-~~~~~~ld~ 337 (649)
T KOG1536|consen 276 PNLLNILLFRNLKPLKRLSEKLLASALEC--DS---KASCSLVLCGFSSA------------ETEIKDTN-KEFLKGLDN 337 (649)
T ss_pred chhhhhhhhcccchHHHHHHHHHHhhhcc--cc---ccCceeEEeecccc------------chhhhhhH-HHHHHhhhh
Confidence 334444444321111111111 1111111 11 12233334432210 00000111 111111111
Q ss_pred hhhhhhhhhhhhhhcccccCCCCCCCcccEEEecCCCCCCHHHHHHhcccccCCcEEEEecccCChhhhhcCC--CCC--
Q psy6919 328 KKLGQLMKKMELEFCQSAASRAPSEAYMPILVNEAPSDFNVDEYYRHLNTKKLGQLVIYSGVMSSSHNVLDGP--TLL-- 403 (638)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~t~~~G~~i~~~e~v~STn~~l~~~--~~~-- 403 (638)
..--=+.++.++.+.... .++. .++......+|+.+.|++.++++.+|+.++|.|+++|||+++... .+|
T Consensus 338 s~~~~k~~D~s~k~~i~~----~~E~--di~~~~~s~nFdl~lY~k~i~tk~~G~~ll~a~V~tST~~ild~n~s~lpse 411 (649)
T KOG1536|consen 338 SNSKLKSPDNSVKFVIIL----GSEE--DILVADDSPNFDLELYFKSINTKRFGRVLLWAPVLTSTMDILDHNFSELPSE 411 (649)
T ss_pred hhhhccCCCcceeEEEEe----cccc--ccccccCCCCcCHHHHHHHhhhhccCceEEEEeecchHHHHHhhhhhcCCcc
Confidence 100000000000000000 0000 111122456899999999999999999999999999999999874 355
Q ss_pred CccEEEeCcccccccCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccC--CCcceeeecCcE
Q psy6919 404 HGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQ--DIDLGIKWPNDL 481 (638)
Q Consensus 404 ~g~vViA~~QTaGRGR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~--~~~v~IKWPNDI 481 (638)
.|.+|+|+.||+||||+||.|+||.|+++||+.+..+..+.....++++++++.+|++++++..++ +++++|||||||
T Consensus 412 ~g~vvv~~~Q~sGRGRGgN~WlsP~G~~~~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~~~pGy~dIpvrIKWPNDl 491 (649)
T KOG1536|consen 412 VGLVVVANIQTSGRGRGGNVWLSPKGCAMSSFTISMPLKSRVVPLIPFVQHLALVAVVEAVRYAPGYPDIPVRIKWPNDL 491 (649)
T ss_pred cceEEEEeEEeecccCCCCeeecCcceEeEEEEEEeecccccccchHHHHHHHHHHHHHHHhcCCCCCCCceeeecCccc
Confidence 899999999999999999999999999999999988776555677889999999999999988765 889999999999
Q ss_pred EEeCceeEEEEEeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccccC-----CCCCCCCHHHHHHHHHHHHHHH-
Q psy6919 482 YVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSAN-----PSSPLLSYEQYFALVFNHLEQL- 555 (638)
Q Consensus 482 y~~~~kKigGILvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~~~-----tsl~~i~r~~Lla~il~~le~l- 555 (638)
|+++..|||||||++++.++ .+.++|||||||.|..||+|||+++... +-...+.+|+|+|++++.||++
T Consensus 492 Y~~~~lKvgGiLv~st~r~n----~f~v~iGCGiNVtN~~PT~cLN~ll~~~n~e~~~~~l~~k~EkLiA~~~n~fe~~~ 567 (649)
T KOG1536|consen 492 YVNGYLKVGGILVTSTYRSN----KFNVSIGCGINVTNDGPTTCLNDLLDEMNEERNLLHLAIKAEKLIAAVFNKFEKYF 567 (649)
T ss_pred eeeeccccceEEEEeeecCc----eEEEEEeeeeEecCCCCceeHHHHHHhhchhhccccchhhHHHHHHHHHHHHHHHH
Confidence 99998999999999999988 8999999999999999999999987631 1123578999999999999987
Q ss_pred ---hcCCcHHHHHHHHHhhccCCCEEEEEECCccEEEEEEEeECCCCcEEEEec------CCeEEEEecCCeEEEcccCc
Q psy6919 556 ---MEGDFDEIYDLYYKHWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSE------EGYIFSVRPDGNTFDMLNGL 626 (638)
Q Consensus 556 ---~~~g~~~~l~~y~~~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~------~G~~~~v~sgevSfd~~~~l 626 (638)
+++|++.+++.||+||+|.+|+|.+.+. | ..-++.|+||+|+|+++.. ++++..++||+|||||||||
T Consensus 568 k~f~d~G~~silp~YYeyWLHS~Q~V~L~d~-~--e~vii~~~dD~G~L~~~~~~~~~~~t~kv~~l~PDGNtFDmmknL 644 (649)
T KOG1536|consen 568 KLFMDQGPKSILPLYYEYWLHSNQRVILEDK-G--EAVIIGGTDDIGFLQVSGLLLAVGDTNKVYELHPDGNTFDMMKNL 644 (649)
T ss_pred HHHHhhCHHhHhHHHHHHHhccCcEEeccCC-C--cceEEeeeecccceeeehhcccCCCCCceEEEcCCCcHHHHHHHh
Confidence 6889999999999999999999998653 3 2345667799999999964 45899999999999999999
Q ss_pred ccccC
Q psy6919 627 IAPKQ 631 (638)
Q Consensus 627 i~~k~ 631 (638)
|.+|+
T Consensus 645 I~~K~ 649 (649)
T KOG1536|consen 645 IRHKY 649 (649)
T ss_pred hccCC
Confidence 99996
No 2
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-50 Score=411.09 Aligned_cols=226 Identities=25% Similarity=0.405 Sum_probs=197.3
Q ss_pred ecccCChhhhhcCC---CCCCccEEEeCcccccccCCCCcEEcCCC-CceEEEEEeeCccccccCCcchHHHHHHHHHHH
Q psy6919 387 SGVMSSSHNVLDGP---TLLHGLTVIPRQQTQGTGRSNNIWLSPPG-CAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVL 462 (638)
Q Consensus 387 ~e~v~STn~~l~~~---~~~~g~vViA~~QTaGRGR~gr~W~Sp~G-~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~ 462 (638)
+++++|||++|++. +.+.+++|+|++||+||||+||.|+||+| ++|||++++|+.+. ..++.+++++|+||++
T Consensus 1 ~~~i~STn~~a~~~~~~~~~~~~vvvA~~QTaGRGR~GR~W~Sp~G~~l~~S~~l~~~~~~---~~~~~lsl~~g~av~~ 77 (238)
T COG0340 1 FDEIDSTNTEAKERAASGAPEGTVVVAEEQTAGRGRRGRKWSSPKGGGLYMSLLLRPDLPP---AELPSLSLVAGLAVAE 77 (238)
T ss_pred CCccchHHHHHHHHHHhCCCCCcEEEEeeeccCcCCCCCcccCCCCCCEEEEEEEcCCcCh---hhcchhHHHHHHHHHH
Confidence 47899999999863 46788899999999999999999999998 77999999998764 5789999999999999
Q ss_pred HHHhccCCCcceeeecCcEEEeCceeEEEEEeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccccCCCC----CC
Q psy6919 463 AVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSS----PL 538 (638)
Q Consensus 463 aL~~~~~~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~~~tsl----~~ 538 (638)
||+++. .+++||||||||+++ +|+||||+|+....+ ...++||||||||++..|+. .++...++++ +.
T Consensus 78 al~~~~--~~~~iKWPNDv~~~~-kKl~GIL~E~~~~~~---~~~~~viGIGINv~~~~~~~--~~i~~~atsL~~~~~~ 149 (238)
T COG0340 78 ALRKFG--IDVRIKWPNDVLLNG-KKLAGILVEAVGDEN---GLLAVVVGIGINVNNPPPDF--EDIGQPATSLQEEGEE 149 (238)
T ss_pred HHHHhC--cccCccCCcceeECC-cceEEEEEeeeecCC---CceEEEEEEEEeeccCCcch--hhhhhhhhhHHhhhCC
Confidence 999984 899999999999999 899999999987554 25689999999999986542 3444444444 36
Q ss_pred CCHHHHHHHHHHHHHHH----hcCCcHHHHHHHHHhhccCCCEEEEEECCccEEEEEEEeECCCCcEEEEecCCeEEEEe
Q psy6919 539 LSYEQYFALVFNHLEQL----MEGDFDEIYDLYYKHWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGYIFSVR 614 (638)
Q Consensus 539 i~r~~Lla~il~~le~l----~~~g~~~~l~~y~~~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~ 614 (638)
++|++|++.++++|+.+ .+.++.+|+++|++++.++|++|++..+++....|++.|||++|.|+++.++|.++.++
T Consensus 150 ~~r~~l~~~ll~~l~~~~~~~~~~~~~~i~~~~~~~~~~~g~~V~~~~~~~~~~gg~a~~id~~G~L~l~~~~g~~~~~~ 229 (238)
T COG0340 150 IDREELLAKLLKELEKYLRQFLREGFAPILARWRARSLSLGKEVRLTLGGGVIFGGIAKGIDEDGALLLETDDGEVQTIY 229 (238)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhccCCCEEEEEeCCCcEeeeEEEEECCCceEEEEeCCCeEEEEe
Confidence 89999999999999864 67788889999999999999999999887666666999999999999999999999999
Q ss_pred cCCeEEEcc
Q psy6919 615 PDGNTFDML 623 (638)
Q Consensus 615 sgevSfd~~ 623 (638)
+||+||+.+
T Consensus 230 ~Gev~~~~~ 238 (238)
T COG0340 230 SGEVSLRRA 238 (238)
T ss_pred ccEEEeecC
Confidence 999999863
No 3
>PRK06955 biotin--protein ligase; Provisional
Probab=100.00 E-value=6.9e-50 Score=420.41 Aligned_cols=251 Identities=18% Similarity=0.269 Sum_probs=207.4
Q ss_pred CCCCHHHHHHhcccccCCcEEEEecccCChhhhhcCC---------CCCCccEEEeCcccccccCCCCcEEcCCCC-ceE
Q psy6919 364 SDFNVDEYYRHLNTKKLGQLVIYSGVMSSSHNVLDGP---------TLLHGLTVIPRQQTQGTGRSNNIWLSPPGC-AMF 433 (638)
Q Consensus 364 ~~~~~~~~~~~L~t~~~G~~i~~~e~v~STn~~l~~~---------~~~~g~vViA~~QTaGRGR~gr~W~Sp~G~-~~f 433 (638)
-.++.+++...|.+..+|..++++++++|||+++++. ++++|++|+|++||+||||+||+|+||+|+ +||
T Consensus 15 ~~l~~~~i~~~~~~~~~~~~i~~~~~v~STN~~a~~~~~~~~~~~~~~~~g~vvvA~~QTaGRGR~GR~W~Sp~G~~L~~ 94 (300)
T PRK06955 15 WRIDRDRLDAHLAAAARAWPLEIVEETGSTNADLMARLKALPRSADALPAPIVRVAYEQTAGRGRQGRPWFAQPGNALLF 94 (300)
T ss_pred CCCCHHHHHhhcccccCCceEEEEeCCCCHHHHHHHHHHhcccccccCCCCeEEEECccccCCCCCcCcccCCCCCcEEE
Confidence 4688999999998777788999999999999998431 147899999999999999999999999994 799
Q ss_pred EEEEeeCccccccCCcchHHHHHHHHHHHHHHhccC--CCcceeeecCcEEEeCceeEEEEEeeeeecCCcCCCccEEEE
Q psy6919 434 SMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQ--DIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNI 511 (638)
Q Consensus 434 Sl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~--~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~~~~~~~vVI 511 (638)
|++++|+.+. ..++.+++++|+||+++|+++.. +.+++||||||||+++ |||||||+|....++ ....+||
T Consensus 95 Si~l~~~~~~---~~~~~Lsl~~glAv~~al~~~~~~~~~~~~iKWPNDIl~~g-kKiaGILiE~~~~~~---~~~~vVI 167 (300)
T PRK06955 95 SVACVLPRPV---AALAGLSLAVGVALAEALAALPAALGQRIALKWPNDLLIAG-RKLAGILIETVWATP---DATAVVI 167 (300)
T ss_pred EeEecCCCCh---HHhhhHHHHHHHHHHHHHHHhhcccCCceeeeCCceeeECC-cEEEEEEEEcccCCC---CccEEEE
Confidence 9999987554 45678999999999999999742 4689999999999999 899999999876554 3567999
Q ss_pred EEeeecCCCCCC----Ccccccc-----c-cCC----CCCCCCHHHHHHHHHHHHHHH----hcCCcHHHHHHHHHhhcc
Q psy6919 512 GVGMNLDNSQPT----TCLNSIF-----S-ANP----SSPLLSYEQYFALVFNHLEQL----MEGDFDEIYDLYYKHWLH 573 (638)
Q Consensus 512 GIGINvn~~~p~----~~l~~l~-----~-~~t----sl~~i~r~~Lla~il~~le~l----~~~g~~~~l~~y~~~~~~ 573 (638)
|||||||+..+. +++.... . .++ ....+++++|++.++++|+++ ...+++.++++|++++++
T Consensus 168 GIGINv~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 247 (300)
T PRK06955 168 GIGLNVRRADAVAAEVDALRAREAALARGLPPVALAAACAGANLTDTLAAALNALAPALQAFGADGLAPFAARWHALHAY 247 (300)
T ss_pred EEEEeeCCCccccccccccccccccccccccchhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhc
Confidence 999999976321 1111100 0 011 134689999999999999875 467899999999999999
Q ss_pred CCCEEEEEECCccEEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEc
Q psy6919 574 NNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDM 622 (638)
Q Consensus 574 ~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~ 622 (638)
.|++|++...+++.++|+++|||++|.|+|++++| .+.+.+||+|++.
T Consensus 248 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~~g-~~~~~sGeV~~~~ 295 (300)
T PRK06955 248 AGREVVLLEDGAELARGVAHGIDETGQLLLDTPAG-RQAIAAGDVSLRE 295 (300)
T ss_pred CCCeEEEEECCCcEEEEEEeeECCCceEEEEeCCC-eEEEEEEEEEEec
Confidence 99999997655556799999999999999999888 6799999999864
No 4
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=100.00 E-value=9.6e-50 Score=406.30 Aligned_cols=224 Identities=26% Similarity=0.363 Sum_probs=190.5
Q ss_pred EEEecccCChhhhhcCC---CCCCccEEEeCcccccccCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHH
Q psy6919 384 VIYSGVMSSSHNVLDGP---TLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISI 460 (638)
Q Consensus 384 i~~~e~v~STn~~l~~~---~~~~g~vViA~~QTaGRGR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV 460 (638)
++++++++|||+++++. ..++|++|+|++||+||||+||+|+||+|++|||++++|+.+. +.++.+++++|+||
T Consensus 2 i~~~~~~~STn~~~~~~~~~~~~~~~vv~A~~QTaGRGR~gr~W~Sp~g~l~~S~~l~~~~~~---~~~~~ls~~~~lAv 78 (237)
T TIGR00121 2 VIVLDVIDSTNQYALELAKEGKLKGDLVVAEYQTAGRGRRGRKWLSPEGGLYFSLILRPDLPK---SPAPGLTLVAGIAI 78 (237)
T ss_pred EEEEeecCCHHHHHHHHHhcCCCCCeEEEEcccCCCCCCCCCcccCCCCceEEEEEECCCCCh---hHhhhhHHHHHHHH
Confidence 67899999999999863 2358999999999999999999999999999999999987543 46788999999999
Q ss_pred HHHHHhccCCCcceeeecCcEEEeCceeEEEEEeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccccCCC-----
Q psy6919 461 VLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPS----- 535 (638)
Q Consensus 461 ~~aL~~~~~~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~~~ts----- 535 (638)
+++|+++. .+++||||||||+++ +|+||||+|.....+ ....+||||||||+++.++.++.. .+++
T Consensus 79 ~~al~~~~--~~~~iKWPNDI~~~~-kKi~GIL~E~~~~~~---~~~~vviGIGiNv~~~~~~~~~~~---~a~sl~~~~ 149 (237)
T TIGR00121 79 AEVLKELG--DQVQVKWPNDILLKD-KKLGGILTELTGKEN---RADYVVIGIGINVQNRKPAESLRE---QAISLSEEA 149 (237)
T ss_pred HHHHHHhC--CCCCCcCCceEEECC-eEEEEEEEEcccCCC---CcCEEEEEEEEccCCCCCchhhcc---cceehHHhh
Confidence 99999984 689999999999999 899999999876543 356799999999998654332221 1222
Q ss_pred CCCCCHHHHHHHHHHHHHHH----hcCCcHHHHHHHHHhhccCCCEEEEEECCccEEEEEEEeECCCCcEEEEecCCeEE
Q psy6919 536 SPLLSYEQYFALVFNHLEQL----MEGDFDEIYDLYYKHWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGYIF 611 (638)
Q Consensus 536 l~~i~r~~Lla~il~~le~l----~~~g~~~~l~~y~~~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~ 611 (638)
...+++++|++.++++|+++ .+++|+.++++|++++.+.|++|++...+ +.++|++.|||++|+|+|++ +|.++
T Consensus 150 ~~~~~~~~ll~~l~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~-~~~~G~~~gI~~~G~L~v~~-~~~~~ 227 (237)
T TIGR00121 150 GIDLDRGELIEGFLRNFEENLEWFEQEGIDEILSKWEKLSAHIGREVSLTTGN-GEIEGIARGIDKDGALLLED-GGGIK 227 (237)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhhhccCCeEEEEeCC-cEEEEEEEeECCCceEEEEe-CCeEE
Confidence 24689999999999998865 56799999999999999999999998765 46899999999999999995 66688
Q ss_pred EEecCCeEEE
Q psy6919 612 SVRPDGNTFD 621 (638)
Q Consensus 612 ~v~sgevSfd 621 (638)
.+.+||+|++
T Consensus 228 ~~~sGev~~~ 237 (237)
T TIGR00121 228 KIISGEISLR 237 (237)
T ss_pred EEEEEEEEEC
Confidence 9999999974
No 5
>PRK08330 biotin--protein ligase; Provisional
Probab=100.00 E-value=2.6e-48 Score=395.60 Aligned_cols=224 Identities=25% Similarity=0.436 Sum_probs=190.4
Q ss_pred CCcEEEEecccCChhhhhcCC--CCCCccEEEeCcccccccCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHH
Q psy6919 380 LGQLVIYSGVMSSSHNVLDGP--TLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVA 457 (638)
Q Consensus 380 ~G~~i~~~e~v~STn~~l~~~--~~~~g~vViA~~QTaGRGR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~a 457 (638)
+|+.++|+++++|||+++++. ..++|++|+|++||+||||+||+|+||+|++|||++++|+..+ ..++.+++++|
T Consensus 1 ~g~~i~~~~~v~STn~~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~G~l~~S~~l~~~~~~---~~~~~l~~~~~ 77 (236)
T PRK08330 1 IGRNIIYFDEVDSTNEYAKRIAPDEEEGTVIVADRQTAGHGRKGRAWASPEGGLWMSVILKPKVSP---EHLPKLVFLGA 77 (236)
T ss_pred CCceEEEEcccCcHHHHHHHHhcCCCCCEEEEECccccCCCCCCCeeeCCCCCeEEEEEEcCCCCH---HHHHHHHHHHH
Confidence 378999999999999999864 4688999999999999999999999999988999999987543 46788999999
Q ss_pred HHHHHHHHhccCCCcceeeecCcEEEeCceeEEEEEeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccccCCCC-
Q psy6919 458 ISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSS- 536 (638)
Q Consensus 458 lAV~~aL~~~~~~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~~~tsl- 536 (638)
+||+++|+++ +.+++||||||||+++ +|+||||+|.. . ..+|||||||||++.|... ...++++
T Consensus 78 ~av~~~l~~~--g~~~~iKWPNDI~~~~-kKi~GILiE~~--~------~~~viGiGiNv~~~~p~~l----~~~atsL~ 142 (236)
T PRK08330 78 LAVVDTLREF--GIEGKIKWPNDVLVNY-KKIAGVLVEGK--G------DFVVLGIGLNVNNEIPDEL----RETATSMK 142 (236)
T ss_pred HHHHHHHHHc--CCCccccCCCeEEECC-eEEEEEeEEEe--C------CEEEEEEEEecCCCCCccc----ccccccHH
Confidence 9999999997 4789999999999999 89999999975 1 2589999999998655421 1123333
Q ss_pred ----CCCCHHHHHHHHHHHHHHH----hcCCcHHHHHHHHHhhccCCCEEEEEECCccEE-EEEEEeECCCCcEEEEecC
Q psy6919 537 ----PLLSYEQYFALVFNHLEQL----MEGDFDEIYDLYYKHWLHNNVNVTVVSERGEAQ-QVKIIGIDDFGFLNVRSEE 607 (638)
Q Consensus 537 ----~~i~r~~Lla~il~~le~l----~~~g~~~~l~~y~~~~~~~G~~V~v~~~~g~~~-~G~i~GIdd~G~Llv~~~~ 607 (638)
..++++++++.++++|+++ .+++ ..++++|++++.+.|++|++..++ +.. +|++.|||++|.|+|++++
T Consensus 143 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~~v~~~~~~-~~~~~G~~~gI~~~G~L~v~~~~ 220 (236)
T PRK08330 143 EVLGREVPLIEVFKRLVENLDRWYKLFLEGP-GEILEEVKGRSMILGKRVKIIGDG-EILVEGIAEDIDEFGALILRLDD 220 (236)
T ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcCCeEEEEECC-cEEEEEEEEEECCCCEEEEEECC
Confidence 3588999999999998765 3334 789999999999999999997754 443 6999999999999999999
Q ss_pred CeEEEEecCCeEEEcc
Q psy6919 608 GYIFSVRPDGNTFDML 623 (638)
Q Consensus 608 G~~~~v~sgevSfd~~ 623 (638)
|..+.+.+||+|++++
T Consensus 221 g~~~~~~~gev~~~~~ 236 (236)
T PRK08330 221 GTVKKVLYGDVSLRFL 236 (236)
T ss_pred CCEEEEEEEEEEEecC
Confidence 9988999999999753
No 6
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=100.00 E-value=2.5e-47 Score=398.00 Aligned_cols=233 Identities=21% Similarity=0.277 Sum_probs=190.3
Q ss_pred CCcEEEEecccCChhhhhcCC-------CC--CCcc-EEEeCcccccccCC------CCcEEcCCCCceEEEEEeeCccc
Q psy6919 380 LGQLVIYSGVMSSSHNVLDGP-------TL--LHGL-TVIPRQQTQGTGRS------NNIWLSPPGCAMFSMQLHIDLKS 443 (638)
Q Consensus 380 ~G~~i~~~e~v~STn~~l~~~-------~~--~~g~-vViA~~QTaGRGR~------gr~W~Sp~G~~~fSl~l~~~~~~ 443 (638)
+|..++|+++++|||+++++. +. ++++ +|+|++||+||||+ ||+|.||+|++|||++++++...
T Consensus 15 ~~~~~~~~~~v~STN~~a~~~~~~~~~~g~~~~~~~~vv~A~~QT~GRGR~~~~~~~gR~W~Sp~G~L~~S~~l~~~~~~ 94 (285)
T PTZ00275 15 LNALRLHFDVLDSTQLYCKRNMKRFIQNGKLQDDNMIIVSCNEQTNGIGTRDTKKNQDRIWLSEKGNLFTTFVFLWNRND 94 (285)
T ss_pred cCcEEEEEcccCcHHHHHHHhHHHHhhcCCcCCCCeEEEEECcccCCCCcCCCCCCCCCEEECCCCceEEEEEEecCCcC
Confidence 589999999999999999762 22 4665 56699999999997 99999999988999999865322
Q ss_pred cccCCcchHHHHHHHHHHHHHHhccCCCcceeeecCcEEEeCceeEEEEEeeeeecCCc---CCCccEEEEEEeeecCCC
Q psy6919 444 QLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTF---ESQMAVCNIGVGMNLDNS 520 (638)
Q Consensus 444 ~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~---~~~~~~vVIGIGINvn~~ 520 (638)
.+.++.+++++|+||+++|+.+ +.+++||||||||+++ |||||||+|+....+. +.+...+|||||||||+.
T Consensus 95 --~~~~~~Lsl~~alAv~~~L~~~--~~~~~IKWPNDI~~~~-kKiaGILiE~~~~~~~~~~~~~~~~vViGIGINvn~~ 169 (285)
T PTZ00275 95 --IEKVKYLAQTCTVAISKTLEYF--HLVTQIKWINDVLVNY-KKIAGCLVHLYYLDDFPNLNSRYVCVMVGIGINVTLE 169 (285)
T ss_pred --HhHhHHHHHHHHHHHHHHHHHh--CCceeEECCCccccCC-cEEEEEEEeeeeccccccccCceeEEEEEEEEecCCC
Confidence 1457789999999999999986 4789999999999999 8999999998753320 113457999999999975
Q ss_pred CCCCccccccccCCCC------------CCCCHHHHHHHHHHHHHHH----hcCCcHHHHHHHHHhhccCCCEEEEEECC
Q psy6919 521 QPTTCLNSIFSANPSS------------PLLSYEQYFALVFNHLEQL----MEGDFDEIYDLYYKHWLHNNVNVTVVSER 584 (638)
Q Consensus 521 ~p~~~l~~l~~~~tsl------------~~i~r~~Lla~il~~le~l----~~~g~~~~l~~y~~~~~~~G~~V~v~~~~ 584 (638)
.+...+. ..++++ ...++++|++.++..|+++ ...+++.++++|++++.+.|+.|++..++
T Consensus 170 ~~~~~~~---~~atSL~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~~~~~~g~~~i~~~~~~~~~~~g~~V~v~~~~ 246 (285)
T PTZ00275 170 DKHNLLN---NNYTSIKKELQRDFNTPKSIPSVEQVTEKLIINLKAVINKLRKEGFSSFLDYITPRLLYKDKKVLIDQDN 246 (285)
T ss_pred CCccccc---CCcccHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccCCCEEEEEeCC
Confidence 4321111 112222 2347899999999988765 56789999999999999999999998754
Q ss_pred ccEEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEE
Q psy6919 585 GEAQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFD 621 (638)
Q Consensus 585 g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd 621 (638)
+.++|++.|||++|+|+|++++|.++.+.+|++|+.
T Consensus 247 -~~~~G~~~gId~~G~L~i~~~~G~~~~~~sGev~~~ 282 (285)
T PTZ00275 247 -ELIVGYLQGLLHDGSLLLLREKNKLVRVNTGHLRLK 282 (285)
T ss_pred -CEEEEEEEEECCCCeEEEEeCCCCEEEEEEEEEEEc
Confidence 679999999999999999999999999999999974
No 7
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=100.00 E-value=6.4e-47 Score=401.33 Aligned_cols=251 Identities=22% Similarity=0.301 Sum_probs=206.9
Q ss_pred CcccEEEecCCCCCCHHHHHHhcccccCCcEEEEecccCChhhhhcCC--CCCCccEEEeCcccccccCCCCcEEcCCCC
Q psy6919 353 AYMPILVNEAPSDFNVDEYYRHLNTKKLGQLVIYSGVMSSSHNVLDGP--TLLHGLTVIPRQQTQGTGRSNNIWLSPPGC 430 (638)
Q Consensus 353 ~~~~~~~~~~p~~~~~~~~~~~L~t~~~G~~i~~~e~v~STn~~l~~~--~~~~g~vViA~~QTaGRGR~gr~W~Sp~G~ 430 (638)
.+|.+. ..+..+++..+...+. |..++++++++|||+++++. ..++|++|+|++||+||||+||+|.||+|+
T Consensus 55 ~Gy~L~--~~~~~l~~~~l~~~l~----~~~i~~~~~v~STn~~~~e~~~~~~~~~vv~A~~Qt~GrGR~gr~W~Sp~g~ 128 (319)
T PRK11886 55 KGYRLA--EPLDLLDPERISSQLP----PGRVTVLPVIDSTNQYLLDRIAELKSGDLCLAEYQTAGRGRRGRQWFSPFGG 128 (319)
T ss_pred CeEEec--CccccCCHHHHHhhCC----CCeEEEEeCCCCHHHHHHHhhcCCCCCcEEEECccCCCCCCCCCcccCCCCC
Confidence 355542 2347788888876653 67899999999999987653 468899999999999999999999999995
Q ss_pred -ceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcceeeecCcEEEeCceeEEEEEeeeeecCCcCCCccEE
Q psy6919 431 -AMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVC 509 (638)
Q Consensus 431 -~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~~~~~~~v 509 (638)
+|||++++|+.+. +.++.+++++|+||+++|+++. ..+++||||||||+++ +|+||||+|.....+ ....+
T Consensus 129 ~L~~S~~~~~~~~~---~~~~~l~l~~~~av~~al~~~~-~~~~~iKWPNDI~~~~-kKl~GIL~E~~~~~~---~~~~~ 200 (319)
T PRK11886 129 NLYLSLYWRLNQGP---AQAMGLSLVVGIAIAEALRRLG-AIDVGLKWPNDIYLND-RKLAGILVELSGETG---DAAHV 200 (319)
T ss_pred CEEEEEEeCCCCCh---HHHhhHHHHHHHHHHHHHHHhc-CCCcceeCCceeeECC-eeEEEEEEEeccCCC---CccEE
Confidence 7999999987543 4567899999999999999986 4689999999999999 899999999865543 25579
Q ss_pred EEEEeeecCCCCCCCc-cccccccCCC----CCCCCHHHHHHHHHHHHHHH----hcCCcHHHHHHHHHhhccCCCEEEE
Q psy6919 510 NIGVGMNLDNSQPTTC-LNSIFSANPS----SPLLSYEQYFALVFNHLEQL----MEGDFDEIYDLYYKHWLHNNVNVTV 580 (638)
Q Consensus 510 VIGIGINvn~~~p~~~-l~~l~~~~ts----l~~i~r~~Lla~il~~le~l----~~~g~~~~l~~y~~~~~~~G~~V~v 580 (638)
|||||||||++.+... ++ ..+++ ...+++++|++.++++|+.+ .+.+++.++++|+++|.++|+.|++
T Consensus 201 viGIGiNv~~~~~~~~~~~---~~~~sl~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~ 277 (319)
T PRK11886 201 VIGIGINVAMPDFPEELID---QPWSDLQEAGPTIDRNQLAAELIKQLRAALELFEQEGLAPFLERWKKLDLFLGREVKL 277 (319)
T ss_pred EEEEEEccCCCCCchhhhc---cceeeHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccCCeEEE
Confidence 9999999998643221 11 11222 34689999999999998875 4678999999999999999999999
Q ss_pred EECCccEEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEc
Q psy6919 581 VSERGEAQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDM 622 (638)
Q Consensus 581 ~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~ 622 (638)
...+ +.++|++.|||++|+|+|+ ++|..+.+.+||++++.
T Consensus 278 ~~~~-~~~~G~~~gi~~~G~L~i~-~~g~~~~~~~gev~~~~ 317 (319)
T PRK11886 278 IIGD-KEISGIARGIDEQGALLLE-DDGVEKPFNGGEISLRS 317 (319)
T ss_pred EeCC-cEEEEEEEEECCCceEEEE-eCCcEEEEEEeEEEEec
Confidence 8755 5689999999999999999 57778899999999865
No 8
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=100.00 E-value=1.2e-46 Score=426.30 Aligned_cols=260 Identities=18% Similarity=0.270 Sum_probs=212.2
Q ss_pred CCCcc-cEEEecCCCCCCHHHHHHhcccccCCcEEEEecccCChhhhhcCC-----CCCCccEEEeCcccccccCCCCcE
Q psy6919 351 SEAYM-PILVNEAPSDFNVDEYYRHLNTKKLGQLVIYSGVMSSSHNVLDGP-----TLLHGLTVIPRQQTQGTGRSNNIW 424 (638)
Q Consensus 351 ~~~~~-~~~~~~~p~~~~~~~~~~~L~t~~~G~~i~~~e~v~STn~~l~~~-----~~~~g~vViA~~QTaGRGR~gr~W 424 (638)
..++| .+. ..++.++.+.|.+.|.+. +..+.++++++|||+++++. ..++|++|+|++||+||||+||+|
T Consensus 54 ~g~GY~rL~--~~~~lL~~~~I~~~l~~~--~~~i~~~~~idSTN~~~~~~~~~~~~~~~g~vvvAe~QTaGRGRrGR~W 129 (592)
T PRK13325 54 QHDGYWRLV--RPLAVFDAEGLRELGERS--GFQTALKHECASSNDEILELARIAPDKAHKTICVTHLQSKGRGRQGRKW 129 (592)
T ss_pred cCCChhhhc--CccccCCHHHHHHhhhcC--CCcEEEEeCCCCHHHHHHHHHhhccCCCCCeEEEECccCCCCCCCCCcc
Confidence 45888 764 245889999999999654 67899999999999999752 258999999999999999999999
Q ss_pred EcCCCC-ceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcceeeecCcEEEeCceeEEEEEeeeeecCCcC
Q psy6919 425 LSPPGC-AMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFE 503 (638)
Q Consensus 425 ~Sp~G~-~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~~ 503 (638)
+||+|+ +|||++++++.+. ..+..+++++|+||+++|+++ +.+++||||||||+++ ||+||||+|....++
T Consensus 130 ~Sp~G~~Ly~S~~l~~~~~~---~~~~~Lsl~vgvAv~~aL~~~--g~~v~lKWPNDIl~~g-kKlaGILiE~~~~~~-- 201 (592)
T PRK13325 130 SHRLGECLMFSFGWVFDRPQ---YELGSLSPVAAVACRRALSRL--GLKTQIKWPNDLVVGR-DKLGGILIETVRTGG-- 201 (592)
T ss_pred cCCCCCcEEEEeeecCCCCh---hhhhhHHHHHHHHHHHHHHHc--CCCceEeCcceEEECC-ceEEEEEEeeeecCC--
Confidence 999995 7999999987544 467889999999999999997 4689999999999999 899999999874333
Q ss_pred CCccEEEEEEeeecCCCCCCC---ccccccccCCCCCCCCHHHHHHHHHHHHHHH----hcCCcHHHHHHHHHhhccCCC
Q psy6919 504 SQMAVCNIGVGMNLDNSQPTT---CLNSIFSANPSSPLLSYEQYFALVFNHLEQL----MEGDFDEIYDLYYKHWLHNNV 576 (638)
Q Consensus 504 ~~~~~vVIGIGINvn~~~p~~---~l~~l~~~~tsl~~i~r~~Lla~il~~le~l----~~~g~~~~l~~y~~~~~~~G~ 576 (638)
..++||||||||+++.... ++.++.........++|++|++.++++|++. .+.+|+.|+++|++++.+.|+
T Consensus 202 --~~~vVIGIGINv~~p~~~~~~~~~~sL~~~~~~~~~~dr~~ll~~ll~~l~~~l~~~~~~g~~~~~~~w~~~~~~~gk 279 (592)
T PRK13325 202 --KTVAVVGIGINFVLPKEVENAASVQSLFQTASRRGNADAAVLLETLLAELDAVLLQYARDGFAPFVAEYQAANRDHGK 279 (592)
T ss_pred --CcEEEEEEEEeeCCCcccccCcChHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCC
Confidence 5679999999998642111 1111111000113589999999999998865 467999999999999999999
Q ss_pred EEEEEECCccEEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccC
Q psy6919 577 NVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNG 625 (638)
Q Consensus 577 ~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~ 625 (638)
.|++...+++.++|++.|||++|.|+|++++|. +.+.+||+|++....
T Consensus 280 ~V~v~~~~~~~~~Gi~~GId~~G~L~l~~~~g~-~~~~sGEVslr~~~~ 327 (592)
T PRK13325 280 AVLLLRDGETVFEGTVKGVDGQGVLHLETAEGK-QTVVSGEISLRSDDR 327 (592)
T ss_pred eEEEEeCCCcEEEEEEEEECCCCEEEEEECCCe-EEEEEEeEEEeecCC
Confidence 999975444568999999999999999999885 799999999975443
No 9
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=100.00 E-value=1.5e-45 Score=377.16 Aligned_cols=222 Identities=19% Similarity=0.359 Sum_probs=174.6
Q ss_pred CCcEEEEecccCChhhhhcCC---CCCCccEEEeCcccccccCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHH
Q psy6919 380 LGQLVIYSGVMSSSHNVLDGP---TLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIV 456 (638)
Q Consensus 380 ~G~~i~~~e~v~STn~~l~~~---~~~~g~vViA~~QTaGRGR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~ 456 (638)
.|..++|+++++|||+++++. +..+|++|+|++||+||||+||+|.||+|++|||++++++... ....+++++++
T Consensus 5 ~~~~i~~~~~v~STN~~ak~~~~~~~~~~~vviA~~QT~GRGR~gR~W~Sp~g~l~~S~~l~~~~~~--~~~~~~lsl~~ 82 (245)
T PTZ00276 5 VPPNIHFVGEVTSTMDVARTMLAAAGGKPFAVLAESQTAGRGTGGRTWTSPKGNMYFTLCIPQKGVP--PELVPVLPLIT 82 (245)
T ss_pred CCceEEEEeCCCCHHHHHHHHHhcCCCCCeEEEECCCCCCCCCCCCcccCCCCCeEEEEEECCCccC--hhHhhHHHHHH
Confidence 467899999999999999874 2357899999999999999999999999988999999865222 14567899999
Q ss_pred HHHHHHHHHhccCCCcceeeecCcEEEeCceeEEEEEeeeeecCCcCCCccEEEEEEeeecCCCCC-------CCccccc
Q psy6919 457 AISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNLDNSQP-------TTCLNSI 529 (638)
Q Consensus 457 alAV~~aL~~~~~~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~~~~~~~vVIGIGINvn~~~p-------~~~l~~l 529 (638)
|+|+++||+++..+.+++||||||||+++ ||+||||+|+.. ..+||||||||+...+ .+++.++
T Consensus 83 alav~~al~~~~~~~~~~iKWPNDI~~~~-kKiaGILiE~~~--------~~vvIGIGINv~~~~~~~~~~~~~~~l~sl 153 (245)
T PTZ00276 83 GLACRAAIMEVLHGAAVHTKWPNDIIYAG-KKIGGSLIESEG--------EYLIIGIGMNIEVAPPVTDAGRESTMVNEI 153 (245)
T ss_pred HHHHHHHHHHhccCCceEEEcCCeeEECC-cEEEEEEEcccC--------CEEEEEEEEeeCCCCCCCccccccccHHHH
Confidence 99999999998435789999999999999 899999999642 2689999999997421 1111111
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHH-hcCC--cHHHHHHHH---HhhccCCCEEEEEECCccEEEEEEEeECCCCcEEE
Q psy6919 530 FSANPSSPLLSYEQYFALVFNHLEQL-MEGD--FDEIYDLYY---KHWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNV 603 (638)
Q Consensus 530 ~~~~tsl~~i~r~~Lla~il~~le~l-~~~g--~~~~l~~y~---~~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv 603 (638)
.. ......++|++|+++++++|+++ ...+ ++.+.+.|. .++...++.|. .. ++..+|++.|||++|.|+|
T Consensus 154 ~~-~~~~~~~~r~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~G~~~gId~~G~Lvv 229 (245)
T PTZ00276 154 AE-DLGVKSVTPQDLAEAVWKHFFDICSDPELTREILIESFDAAMDKSLKLHKRTP--TG-RDPEELTALSLNEWGHLIV 229 (245)
T ss_pred HH-hhCCCCCCHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhccCeEEE--cC-CcEEEEEEEEECCCCeEEE
Confidence 10 01124589999999999999876 2323 357888776 77777777543 23 3457899999999999999
Q ss_pred EecCCeEEEEecC
Q psy6919 604 RSEEGYIFSVRPD 616 (638)
Q Consensus 604 ~~~~G~~~~v~sg 616 (638)
++++|.++.+.++
T Consensus 230 ~~~~G~~~~~~~~ 242 (245)
T PTZ00276 230 RRPDGTEEDLMAE 242 (245)
T ss_pred EECCCCEEEEEhh
Confidence 9999998887654
No 10
>PRK08477 biotin--protein ligase; Provisional
Probab=100.00 E-value=5.9e-44 Score=356.53 Aligned_cols=196 Identities=20% Similarity=0.316 Sum_probs=164.0
Q ss_pred EEEEecccCChhhhhcCC---C-CCCccEEEeCcccccccCCCCcEEcCCCCceEEEEEeeCccccccCCcc--hHHHHH
Q psy6919 383 LVIYSGVMSSSHNVLDGP---T-LLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLP--LIQHIV 456 (638)
Q Consensus 383 ~i~~~e~v~STn~~l~~~---~-~~~g~vViA~~QTaGRGR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~--~l~~~~ 456 (638)
.++++++++|||+++++. + .++|++|+|++||+||||+||+|.||+|++|||++++|+... +..+ .+++++
T Consensus 2 ~i~~~~~v~STn~~~~~~~~~~~~~~~~vvvA~~QTaGRGR~gR~W~Sp~G~L~~S~~l~~~~~~---~~~~~~~lsl~~ 78 (211)
T PRK08477 2 EIRVFESLDSTQTYLIEKIKNGELKAPFAIVAKEQTAGIGSRGNSWEGKKGNLFFSFALKESDLP---KDLPLQSSSIYF 78 (211)
T ss_pred eEEEecCCCCHHHHHHHHHHcCCCCCCEEEEECccCCCCCCCCCcccCCCCCeEEEeecCCCcch---hhhhhHHHHHHH
Confidence 578999999999999864 2 478999999999999999999999999988999999886543 2333 478999
Q ss_pred HHHHHHHHHhccCCCcceeeecCcEEEeCceeEEEEEeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccccCCCC
Q psy6919 457 AISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSS 536 (638)
Q Consensus 457 alAV~~aL~~~~~~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~~~tsl 536 (638)
|+||+++|+++ +.+++||||||||+++ +|+||||+|... ..+|||||||||+.++. ...+ .
T Consensus 79 ~~av~~~l~~~--~~~~~iKWPNDI~~~~-kKi~GIL~E~~~--------~~vviGiGiNv~~~p~~--~~~l------~ 139 (211)
T PRK08477 79 GFLLKEVLKEL--GSKVWLKWPNDLYLDD-KKIGGVITNKIK--------NFIVCGIGLNLKFSPKN--FACL------D 139 (211)
T ss_pred HHHHHHHHHHh--CCCeEEcCCCeeEECC-cEEEEEEEeecC--------CeEEEEEEEeeCCCCCc--cccc------c
Confidence 99999999996 4789999999999999 899999999642 25899999999865321 1111 2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhccCCCEEEEEECCccEEEEEEEeECCCCcEEEE
Q psy6919 537 PLLSYEQYFALVFNHLEQLMEGDFDEIYDLYYKHWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVR 604 (638)
Q Consensus 537 ~~i~r~~Lla~il~~le~l~~~g~~~~l~~y~~~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~ 604 (638)
..+++++|++.++++|+++. ....++++|+ +.+..|+.|++..++ +.++|++.|||++|+|+|+
T Consensus 140 ~~~~~~~ll~~l~~~~~~~~--~~~~~~~~~~-~~~~~~~~v~v~~~~-~~~~g~a~~I~~~G~L~v~ 203 (211)
T PRK08477 140 IEISDDLLLEGFLQKIEKKI--LWKQIFSKYK-LEFEKSKSFSFHIDG-KLVSLKDAELLEDGSILIN 203 (211)
T ss_pred CcCCHHHHHHHHHHHHHHHH--hHHHHHHHHH-HHHHcCCEEEEEECC-EEEEEEEeeECCCCeEEEC
Confidence 46899999999999999875 2457888998 666899999998864 6899999999999999996
No 11
>PRK05935 biotin--protein ligase; Provisional
Probab=100.00 E-value=9e-37 Score=300.47 Aligned_cols=160 Identities=19% Similarity=0.260 Sum_probs=124.9
Q ss_pred EEecccCChhhhhcCC----CCCCccEEEeCcccccccCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHH
Q psy6919 385 IYSGVMSSSHNVLDGP----TLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISI 460 (638)
Q Consensus 385 ~~~e~v~STn~~l~~~----~~~~g~vViA~~QTaGRGR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV 460 (638)
+++++++|||+++++. ..+++++|+|++||+||||+||.|+||+|++|||++++++... .....+..++++|+
T Consensus 6 ~~~~~v~STN~~~~~~~~~~~~~~~~vv~A~~QTaGRGR~GR~W~Sp~G~L~~Si~l~~~~~~---~~~~~~~~l~~~av 82 (190)
T PRK05935 6 YEIAETPSTNTTAKEGMHLWDPYALTVISTREQTAGKGKFGKSWHSSDQDLLASFCFFITVLN---IDVSLLFRLGTEAV 82 (190)
T ss_pred EeCCCCCcHHHHHHHHHhcCCCCCCEEEEECccCCCCCCCCCeeeCCCCCeEEEEEEccCCCC---cCHHHHHHHHHHHH
Confidence 4458999999999864 2347899999999999999999999999988999999765322 23445566678899
Q ss_pred HHHHHhccCCCcceeeecCcEEEeCceeEEEEEeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccccCCCC----
Q psy6919 461 VLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSS---- 536 (638)
Q Consensus 461 ~~aL~~~~~~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~~~tsl---- 536 (638)
+++++++. ..+++||||||||+++ +|+||||+|....++ ...+||||||||+++. +. +.++...++++
T Consensus 83 ~~~l~~~~-~~~~~iKWPNDI~~~~-kKi~GILiE~~~~~~----~~~vVIGIGINv~~~~-~~-~~~~~~~atsL~~~~ 154 (190)
T PRK05935 83 MRLGEDLG-ITEAVIKWPNDVLVHG-EKLCGVLCETIPVKG----GLGVILGIGVNGNTTK-DE-LLGIDQPATSLQELL 154 (190)
T ss_pred HHHHHHhC-CccccccCCCeEEECC-cEEEEEEEeccccCC----CcEEEEEEeEecCCCc-hh-ccccCCCcccHHHhh
Confidence 99999874 3469999999999999 899999999875443 4579999999999752 11 11222223443
Q ss_pred -CCCCHHHHHHHHHHHHHHH
Q psy6919 537 -PLLSYEQYFALVFNHLEQL 555 (638)
Q Consensus 537 -~~i~r~~Lla~il~~le~l 555 (638)
..++++++++.++++|+++
T Consensus 155 ~~~~~~~~l~~~l~~~l~~~ 174 (190)
T PRK05935 155 GHPIDLEEQRERLIKHIKHV 174 (190)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999876
No 12
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine []. Lipoate-protein ligase A (LPLA) (octanoyltransferase) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes [].; GO: 0003824 catalytic activity, 0006464 protein modification process; PDB: 2ARU_A 2C8M_B 2C7I_A 3R07_A 2ARS_A 2ART_A 3FJP_A 3EFR_B 2EAY_B 3EFS_B ....
Probab=99.83 E-value=7.5e-21 Score=173.79 Aligned_cols=121 Identities=32% Similarity=0.498 Sum_probs=94.2
Q ss_pred EecccCChhhhhcCCCCCCccEEEeCcccccccCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHH
Q psy6919 386 YSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVK 465 (638)
Q Consensus 386 ~~e~v~STn~~l~~~~~~~g~vViA~~QTaGRGR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~ 465 (638)
+++.++||+..+....++.+.+++|++||+|| |+|+||+|+++||++++++........+..+...+++++++++.
T Consensus 1 ~g~~~~st~~~~~~~~~~~~~v~v~~rqtgG~----~~w~~p~g~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (125)
T PF03099_consen 1 IGYFQDSTKEELNQEELKEGGVPVARRQTGGR----RVWHSPPGNLYFSLILPPDDPNFPPSDIPSYILLAALAVLEALG 76 (125)
T ss_dssp EETTBSHHHHHHHHHHHHCTTEEEEEESSSSB----EEEEBTTTEEEEEEEEETTTTTHHGGGHHHHHHHHHHHHHHHHH
T ss_pred CcCeECHHHHHHHHhcCccCCEEEEEEeeCCc----ceeeeCCcEEEEEEEEccccccccchhhhHHHHHHHHHHHHHhh
Confidence 46788999434443346789999999999999 99999999999999998764211113466678888999999994
Q ss_pred ----hccCCCcceeeecCcEEEeCceeEEEEEeeeeecCCcCCCccEEEEEEeee
Q psy6919 466 ----SFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMN 516 (638)
Q Consensus 466 ----~~~~~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~~~~~~~vVIGIGIN 516 (638)
... +..+.+|||||||+++ +||||||+|...... ..+++||||+|
T Consensus 77 ~~~~~~~-~~~~~~kw~nDi~~~~-kKi~Gil~~~~~~~~----~~~~~igig~N 125 (125)
T PF03099_consen 77 EFGPGEP-GIDCFIKWPNDIYVNG-KKIAGILQERRRGGI----LHHGSIGIGIN 125 (125)
T ss_dssp HTTHTTT-TSSEEEETTTEEEETT-EEEEEEEEEEETTEE----EEEEEEESSEE
T ss_pred hhccccC-CCceEEeCCCCccCCC-cEEEEEeEeeeCCcE----EEEEEEEEecC
Confidence 333 6889999999999998 999999999876332 45677777776
No 13
>KOG3396|consensus
Probab=99.69 E-value=1.4e-16 Score=145.65 Aligned_cols=103 Identities=50% Similarity=0.869 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHhcCCC-EEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHH
Q psy6919 6 TSNVFHFAERFHRMKASQD-YLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVK 84 (638)
Q Consensus 6 ~~s~e~~~~~f~~~~~~~~-~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e 84 (638)
..++++|.++|+.|.+..+ |++.|++|...++|||++.+.++.++.|..+..++|++|+|+++||||++|+.|++.+..
T Consensus 33 ~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~ 112 (150)
T KOG3396|consen 33 VVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVD 112 (150)
T ss_pred ccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHH
Confidence 4578999999999988765 999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEEEEe-----eccccccCCcEE
Q psy6919 85 LAKHFQCYKLTLDF-----SFYTCWKLSYIF 110 (638)
Q Consensus 85 ~Ar~~G~~~I~L~~-----~fYek~~~GF~~ 110 (638)
.|+..||+++.|+| .||+| |||..
T Consensus 113 l~k~lgcYKi~LdC~~~nv~FYeK--cG~s~ 141 (150)
T KOG3396|consen 113 LAKSLGCYKIILDCDPKNVKFYEK--CGYSN 141 (150)
T ss_pred HHHhcCcEEEEEecchhhhhHHHH--cCccc
Confidence 99999999999998 89999 99965
No 14
>PHA00673 acetyltransferase domain containing protein
Probab=99.52 E-value=8.1e-14 Score=132.81 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHc
Q psy6919 10 FHFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHF 89 (638)
Q Consensus 10 e~~~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~ 89 (638)
..+.+.|+.+..+++..++|+++ +|+|||++.+.+.+.....+...++|++|+|+|++||+|||++||++++++|+++
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~--~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~ 117 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFR--GEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDL 117 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEE--CCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHC
Confidence 44666699999999999999986 6899999999887766555668899999999999999999999999999999999
Q ss_pred CCeEEEEEe-------eccccccCCcEE
Q psy6919 90 QCYKLTLDF-------SFYTCWKLSYIF 110 (638)
Q Consensus 90 G~~~I~L~~-------~fYek~~~GF~~ 110 (638)
||..+.++. .||.+ .|++.
T Consensus 118 Gc~~lyis~~p~~~tv~fy~~--~g~~~ 143 (154)
T PHA00673 118 GATGLYVSGPTEGRLVQLLPA--AGYRE 143 (154)
T ss_pred CCCEEEEecCCCccchHHHHh--CCchh
Confidence 999999985 89999 99976
No 15
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.44 E-value=1.1e-12 Score=123.07 Aligned_cols=107 Identities=39% Similarity=0.664 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHhcC-CCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHH
Q psy6919 5 PTSNVFHFAERFHRMKAS-QDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLV 83 (638)
Q Consensus 5 p~~s~e~~~~~f~~~~~~-~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~ 83 (638)
++.+.+.+.+++..+... ....++++++..++++||++.+.+...........++|..++|+|+|||||||++||++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~ 111 (150)
T PLN02706 32 GDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALT 111 (150)
T ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 456778888888876653 3445566654335899999887643322223456788999999999999999999999999
Q ss_pred HHHHHcCCeEEEEEe-----eccccccCCcEEEEE
Q psy6919 84 KLAKHFQCYKLTLDF-----SFYTCWKLSYIFLMV 113 (638)
Q Consensus 84 e~Ar~~G~~~I~L~~-----~fYek~~~GF~~~gv 113 (638)
++|+++||.++.|.+ +||+| +||+..++
T Consensus 112 ~~a~~~g~~~i~l~~~~~N~~~y~k--~GF~~~g~ 144 (150)
T PLN02706 112 EHARSAGCYKVILDCSEENKAFYEK--CGYVRKEI 144 (150)
T ss_pred HHHHHcCCCEEEEEeccccHHHHHH--CcCEEehh
Confidence 999999999999987 89999 99987553
No 16
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.32 E-value=8.2e-12 Score=115.78 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHH
Q psy6919 9 VFHFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKH 88 (638)
Q Consensus 9 ~e~~~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~ 88 (638)
.+.+.+.+......++..++|+++ ++++||++.+...... ......++|..++|+|+|||+|+|+.||++++++|++
T Consensus 31 ~~~~~~~~~~~l~~~~~~~~v~~~--~~~ivG~~~~~~~~~~-~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~ 107 (144)
T PRK10146 31 HQAFRVGFNANLRDPNMRYHLALL--DGEVVGMIGLHLQFHL-HHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQ 107 (144)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEE--CCEEEEEEEEEecccc-cccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHH
Confidence 344445555444444555667765 6899999988643211 1223356799999999999999999999999999999
Q ss_pred cCCeEEEEEe--------eccccccCCcEEE
Q psy6919 89 FQCYKLTLDF--------SFYTCWKLSYIFL 111 (638)
Q Consensus 89 ~G~~~I~L~~--------~fYek~~~GF~~~ 111 (638)
.||..+.|++ +||++ +||...
T Consensus 108 ~~~~~i~l~~~~~n~~a~~fY~~--~Gf~~~ 136 (144)
T PRK10146 108 AGAEMTELSTNVKRHDAHRFYLR--EGYEQS 136 (144)
T ss_pred cCCcEEEEecCCCchHHHHHHHH--cCCchh
Confidence 9999999986 89999 999653
No 17
>PTZ00330 acetyltransferase; Provisional
Probab=99.26 E-value=5.6e-11 Score=110.55 Aligned_cols=102 Identities=34% Similarity=0.508 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHhcCC-CEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHH
Q psy6919 7 SNVFHFAERFHRMKASQ-DYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKL 85 (638)
Q Consensus 7 ~s~e~~~~~f~~~~~~~-~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~ 85 (638)
.+.+.+...++...... .+.+++++ .+|++||++.+.............++|..++|+|+|||+|||++||++++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~ 110 (147)
T PTZ00330 33 LSQEELEQIAARRRLAGVVTRVFVHS--PTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEI 110 (147)
T ss_pred cchhHHHHHHHHHhcCCCceEEEEEe--CCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHH
Confidence 34555544444322222 23445554 3789999998765433222223457899999999999999999999999999
Q ss_pred HHHcCCeEEEEEe-----eccccccCCcEEEE
Q psy6919 86 AKHFQCYKLTLDF-----SFYTCWKLSYIFLM 112 (638)
Q Consensus 86 Ar~~G~~~I~L~~-----~fYek~~~GF~~~g 112 (638)
|+++|+.++.|.+ +||++ +||+...
T Consensus 111 a~~~~~~~l~l~~n~~a~~~y~k--~GF~~~~ 140 (147)
T PTZ00330 111 ARSSGCYKVILDCTEDMVAFYKK--LGFRACE 140 (147)
T ss_pred HHHCCCCEEEEecChHHHHHHHH--CCCEEec
Confidence 9999999999987 89999 9997754
No 18
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.22 E-value=5.3e-11 Score=99.85 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=63.3
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe--------eccccccC
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF--------SFYTCWKL 106 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~--------~fYek~~~ 106 (638)
+|++||++.+....... .....++|..++|+|+|||+|||+.||++++++|++.|+..+.+.+ +||+| +
T Consensus 4 ~~~ivg~~~~~~~~~~~-~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k--~ 80 (83)
T PF00583_consen 4 DGQIVGFASLRPPPEPF-DHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK--L 80 (83)
T ss_dssp TTEEEEEEEEEEEETTT-TTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH--T
T ss_pred CCEEEEEEEEEECCCcc-ccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH--c
Confidence 79999999887654321 1156889999999999999999999999999999999999999997 89999 9
Q ss_pred CcE
Q psy6919 107 SYI 109 (638)
Q Consensus 107 GF~ 109 (638)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 995
No 19
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.10 E-value=7.9e-10 Score=105.88 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=81.8
Q ss_pred CCCEEEEEEEECC-CC----eEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCC-eEEE
Q psy6919 22 SQDYLVTVIEDTR-TK----QVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQC-YKLT 95 (638)
Q Consensus 22 ~~~~~~~Vaede~-~g----kIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~-~~I~ 95 (638)
......++++... ++ +++|++........... ...++|.+|+|+|+|||+|||++||+++++.++++++ ..+.
T Consensus 52 ~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~ 130 (177)
T COG0456 52 QAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSA-DHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIV 130 (177)
T ss_pred hCcceeEEEEecccCCCcccceeEEEEEEEecCCccc-cCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEE
Confidence 3344556665310 22 59999877532211111 2378999999999999999999999999999999997 8999
Q ss_pred EEe--------eccccccCCcEEEEEEEeehhheeeecccccCCchhHhHHHHHHh
Q psy6919 96 LDF--------SFYTCWKLSYIFLMVIRSQVLKMVYTAGYLIGHPEAKTKLLDTAR 143 (638)
Q Consensus 96 L~~--------~fYek~~~GF~~~gv~k~~~~~~vyk~aY~~~~~e~~i~~l~~~~ 143 (638)
|++ .||++ +||....+.++ ||....++++.|.....
T Consensus 131 L~V~~~N~~Ai~lY~~--~GF~~~~~~~~----------yy~~~~~~a~~~~~~~~ 174 (177)
T COG0456 131 LEVRESNEAAIGLYRK--LGFEVVKIRKN----------YYADGNGDALLMLKMLN 174 (177)
T ss_pred EEEecCChHHHHHHHH--cCCEEEeeehh----------hccCCcchhHHHHHhhh
Confidence 998 79999 99998776655 88888777888876543
No 20
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.09 E-value=4.8e-10 Score=100.03 Aligned_cols=81 Identities=26% Similarity=0.409 Sum_probs=64.9
Q ss_pred HHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCe
Q psy6919 13 AERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCY 92 (638)
Q Consensus 13 ~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~ 92 (638)
.+.++++..++...++|+++ ++++||++.+. ...+|..++|+|+|||+|||++||++++++|++ |+.
T Consensus 32 ~~~~~~~~~~~~~~~~v~~~--~~~ivG~~~~~----------~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~ 98 (117)
T PF13673_consen 32 PEDLEEYLEEGSHTIFVAEE--GGEIVGFAWLE----------PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIR 98 (117)
T ss_dssp HHHHHHHHCTCCCEEEEEEE--TTEEEEEEEEE----------TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCE
T ss_pred HHHHHHHHHhcCCEEEEEEE--CCEEEEEEEEc----------CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCc
Confidence 34455666665567788876 78999998763 123488999999999999999999999999977 999
Q ss_pred EEEEEe-----eccccccCCc
Q psy6919 93 KLTLDF-----SFYTCWKLSY 108 (638)
Q Consensus 93 ~I~L~~-----~fYek~~~GF 108 (638)
.+.++. +||++ +||
T Consensus 99 ~l~~~~~~~a~~~y~~--~GF 117 (117)
T PF13673_consen 99 RLTVEANERARRFYRK--LGF 117 (117)
T ss_dssp EEEEEC-HHHHHHHHH--TT-
T ss_pred EEEEEeCHHHHHHHHh--CCC
Confidence 999986 89999 998
No 21
>KOG3139|consensus
Probab=99.07 E-value=8e-10 Score=104.76 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=69.3
Q ss_pred EEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe------
Q psy6919 25 YLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF------ 98 (638)
Q Consensus 25 ~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~------ 98 (638)
.+++++.|+ ++..||++.+.... +.....++|..++|+++|||+|||++|++.+++.++.+||..+.|++
T Consensus 56 ~~~~~a~d~-~~~~VGai~ck~~~---~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~ 131 (165)
T KOG3139|consen 56 CFCFLALDE-KGDTVGAIVCKLDT---HRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLS 131 (165)
T ss_pred eEEEEEEcC-CCceEEEEEEeccc---cCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchH
Confidence 467777753 33368877654321 22346789999999999999999999999999999999999999997
Q ss_pred --eccccccCCcEEEEEEEe
Q psy6919 99 --SFYTCWKLSYIFLMVIRS 116 (638)
Q Consensus 99 --~fYek~~~GF~~~gv~k~ 116 (638)
++|++ +||+..++...
T Consensus 132 A~~LY~s--LGF~r~~r~~~ 149 (165)
T KOG3139|consen 132 ALRLYES--LGFKRDKRLFR 149 (165)
T ss_pred HHHHHHh--cCceEecceeE
Confidence 89999 99988776554
No 22
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.06 E-value=8e-10 Score=99.77 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=65.8
Q ss_pred CEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-----
Q psy6919 24 DYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----- 98 (638)
Q Consensus 24 ~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----- 98 (638)
...++++.+ ++++||++.+... .....+..++|+|+|||||+|++|++++++++++.|+..+.+.+
T Consensus 30 ~~~~~~~~~--~~~~vg~~~~~~~-------~~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~ 100 (131)
T TIGR01575 30 HLCYLLARI--GGKVVGYAGVQIV-------LDEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNI 100 (131)
T ss_pred CceEEEEec--CCeEEEEEEEEec-------CCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccH
Confidence 334455543 6899999886532 22456889999999999999999999999999999999999875
Q ss_pred ---eccccccCCcEEEEEEEe
Q psy6919 99 ---SFYTCWKLSYIFLMVIRS 116 (638)
Q Consensus 99 ---~fYek~~~GF~~~gv~k~ 116 (638)
.||++ +||+..+..+.
T Consensus 101 ~~~~~y~~--~Gf~~~~~~~~ 119 (131)
T TIGR01575 101 AAQALYKK--LGFNEIAIRRN 119 (131)
T ss_pred HHHHHHHH--cCCCccccccc
Confidence 69999 99988765544
No 23
>KOG3216|consensus
Probab=99.05 E-value=9.3e-10 Score=103.30 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=72.4
Q ss_pred cCCCEEEEEEEE-CCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-
Q psy6919 21 ASQDYLVTVIED-TRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF- 98 (638)
Q Consensus 21 ~~~~~~~~Vaed-e~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~- 98 (638)
+++-++++|+.- ..++.++|++.+...+. ++......+|++++|.|+|||||+|++|++++-+.|.+.||.++.+.+
T Consensus 48 d~~~~~~~v~~ie~~~~~~aGf~~yf~~ys-tW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vl 126 (163)
T KOG3216|consen 48 DPPFKHWLVAAIETSGEVVAGFALYFNNYS-TWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVL 126 (163)
T ss_pred CCCccEEEEEEEecCCCceeEEeeeecccc-cccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 344455555543 23789999987765432 333447889999999999999999999999999999999999998877
Q ss_pred -------eccccccCCcEEEEEE
Q psy6919 99 -------SFYTCWKLSYIFLMVI 114 (638)
Q Consensus 99 -------~fYek~~~GF~~~gv~ 114 (638)
.||++ .|+.....+
T Consensus 127 dwN~rAi~lY~k--~gaq~l~~W 147 (163)
T KOG3216|consen 127 DWNHRAILLYEK--VGAQDLKEW 147 (163)
T ss_pred ccchhHHHHHHH--hCcccccee
Confidence 79999 999776653
No 24
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=99.03 E-value=5.2e-10 Score=120.51 Aligned_cols=117 Identities=15% Similarity=0.261 Sum_probs=93.3
Q ss_pred chhhhh--cccC--CCCCCcccccccccCCCCCCChHHHHHhhccCCcchHHHHHHhhhccceeEEecccccccccccch
Q psy6919 159 MELEFC--QSAA--SRAPSEAYMPILVNEAPSDFNVDEYYRHLNTKKLGQLVIYSGVMSSSHNVLVSSQTSVSTLVGSSA 234 (638)
Q Consensus 159 ~~~~fc--~~~~--~~~~~~~~~~v~le~~p~~~~~~~~~~~L~~~~~~R~~il~~iL~~~Lgl~~~~~~~~~~~~~~~~ 234 (638)
-.+=.| ++.. +.+++..+.+.+|+..++.+...+..+.|+.++..|.+||++||++ |||+|+++++..
T Consensus 195 aAvV~c~vGkG~aiLsG~HpE~~~~~l~~~~~~~~~~~~~~~L~~~e~~R~~fl~~~L~~-lGL~vn~~~~~~------- 266 (367)
T PF09825_consen 195 AAVVYCKVGKGRAILSGPHPEFSPSNLSKQPDNPKYSKVISELKEDEKARLEFLKALLTK-LGLKVNEDTSET------- 266 (367)
T ss_pred cEEEEEEeCCceEEEEecccccChhhcCcccccchhhhHHHHHHhChHHHHHHHHHHHHH-hCcccCCCcccc-------
Confidence 345567 4443 5777888888888888888888889999999999999999999998 999999888721
Q ss_pred hhhhhhhhhhhhhccccccccccc-ChhhhHHHHHHHHHhcCccC-cceeeecceeEEEeccc
Q psy6919 235 IFIFLMVIRSQVLKMVYTAGYLIG-HPEAKTKLLDTARKLYTKKT-QSVVQMKKMELEFCQSA 295 (638)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 295 (638)
..|.+||.||.+ .++...+++++|++..+..+ +.+|++++|+|+|....
T Consensus 267 ------------~~P~LTpl~lss~~~~~v~~l~~~l~~~~~~~~~~~~ikd~nDtF~~~~~~ 317 (367)
T PF09825_consen 267 ------------TVPSLTPLHLSSLSPGKVSELLSSLKEIITKEDGEEYIKDENDTFHFEKGD 317 (367)
T ss_pred ------------CCCCccceEEEcCCcchHHHHHHHHHHhhcccCCeeEEecCCceEEEeccc
Confidence 134556666666 56788899999999988766 46999999999995433
No 25
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.01 E-value=3.7e-09 Score=96.11 Aligned_cols=81 Identities=26% Similarity=0.360 Sum_probs=63.9
Q ss_pred EEEEEEECCCCeEEEEEEEEEeeccccc-cccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe---ecc
Q psy6919 26 LVTVIEDTRTKQVIGTGSLILEQKFIHE-CALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF---SFY 101 (638)
Q Consensus 26 ~~~Vaede~~gkIVG~~~l~~~~~~~~~-~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~---~fY 101 (638)
.++++.+ +++|||++.+....-.... .-..++|..++|+|+|||||+|++||+++++.++++|+.-+.|.. .||
T Consensus 42 ~~~~~~~--~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~~~~~~Y 119 (127)
T PF13527_consen 42 RCVVAED--DGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFPSSPPFY 119 (127)
T ss_dssp EEEEEEE--TTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE-SSHHHH
T ss_pred cEEEEEE--CCEEEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEecCChhhh
Confidence 4567765 7999999887654322211 225788999999999999999999999999999999999988875 799
Q ss_pred ccccCCcEE
Q psy6919 102 TCWKLSYIF 110 (638)
Q Consensus 102 ek~~~GF~~ 110 (638)
++ +||..
T Consensus 120 ~~--~G~~~ 126 (127)
T PF13527_consen 120 RR--FGFEY 126 (127)
T ss_dssp HH--TTEEE
T ss_pred hc--CCCEE
Confidence 99 99964
No 26
>PHA01807 hypothetical protein
Probab=99.01 E-value=1.7e-09 Score=103.66 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHH
Q psy6919 7 SNVFHFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLA 86 (638)
Q Consensus 7 ~s~e~~~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~A 86 (638)
.+.+...+.+.....++....+++++ +|++||++.+...... .......+..|+|+|+|||+|||++||++++++|
T Consensus 35 ~s~ee~~~~~~~~~~~~~~~~lva~~--dg~lvG~~~l~~~~~~--~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~A 110 (153)
T PHA01807 35 RSKEEALERILDSTESNDRTELLVFR--DGKLAGIAVLVFEDDP--HVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLA 110 (153)
T ss_pred CChHHHHHHHHHHhhCCCceEEEEEE--CCEEEEEEEEEcCCCc--ceeeeccceeEEECHHHcCCCHHHHHHHHHHHHH
Confidence 44455545555433344455577765 6899999887643311 1122333556899999999999999999999999
Q ss_pred HHcCCeEEEEEe--------ecccc
Q psy6919 87 KHFQCYKLTLDF--------SFYTC 103 (638)
Q Consensus 87 r~~G~~~I~L~~--------~fYek 103 (638)
++.|+..+.|++ +||++
T Consensus 111 r~~G~~~l~l~v~~~n~~a~~~y~~ 135 (153)
T PHA01807 111 GEGNLPLIAFSHREGEGRYTIHYRR 135 (153)
T ss_pred HHCCCCEEEEEecCCcHHHHHHHHh
Confidence 999999999997 79998
No 27
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.00 E-value=2.5e-09 Score=90.00 Aligned_cols=71 Identities=31% Similarity=0.338 Sum_probs=57.1
Q ss_pred EEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-----e
Q psy6919 25 YLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF-----S 99 (638)
Q Consensus 25 ~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~-----~ 99 (638)
..++++++ ++++||++.+.. .....+|..++|+|+|||||||++||+++.+.++. ..+.+.+ +
T Consensus 3 ~~~~~~~~--~~~ivG~~~~~~-------~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~ 70 (79)
T PF13508_consen 3 ERFFVAED--DGEIVGFIRLWP-------NEDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIK 70 (79)
T ss_dssp EEEEEEEE--TTEEEEEEEEEE-------TTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHH
T ss_pred cEEEEEEE--CCEEEEEEEEEE-------cCCEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHH
Confidence 45677765 799999998843 23367899999999999999999999999998844 4566665 8
Q ss_pred ccccccCCcE
Q psy6919 100 FYTCWKLSYI 109 (638)
Q Consensus 100 fYek~~~GF~ 109 (638)
||++ +||+
T Consensus 71 fY~~--~GF~ 78 (79)
T PF13508_consen 71 FYEK--LGFE 78 (79)
T ss_dssp HHHH--TTEE
T ss_pred HHHH--CcCC
Confidence 9999 9996
No 28
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.00 E-value=2.2e-09 Score=111.44 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=69.8
Q ss_pred CEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-----
Q psy6919 24 DYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----- 98 (638)
Q Consensus 24 ~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----- 98 (638)
+..++++++ +|++||++.+... .....++|.+++|+|+|||+|||++||++++++|+++|+..+.+.+
T Consensus 157 ~~~~~v~~~--~g~iVG~~~~~~~-----~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~ 229 (266)
T TIGR03827 157 NVVYFGVED--GGKIIALASAEMD-----PENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSY 229 (266)
T ss_pred CcEEEEEEE--CCEEEEEEEEecC-----CCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcch
Confidence 344566654 6899999876432 1234578999999999999999999999999999999999998876
Q ss_pred ---eccccccCCcEEEEEEEe
Q psy6919 99 ---SFYTCWKLSYIFLMVIRS 116 (638)
Q Consensus 99 ---~fYek~~~GF~~~gv~k~ 116 (638)
.+|+| +||+..|+.++
T Consensus 230 ~a~~ly~k--~GF~~~G~l~n 248 (266)
T TIGR03827 230 GMNITFAR--LGYAYGGTLVN 248 (266)
T ss_pred hHHHHHHH--cCCccccEEee
Confidence 59999 99999998876
No 29
>PRK07757 acetyltransferase; Provisional
Probab=98.99 E-value=1.9e-09 Score=101.31 Aligned_cols=77 Identities=18% Similarity=0.339 Sum_probs=63.9
Q ss_pred EEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe---ecccc
Q psy6919 27 VTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF---SFYTC 103 (638)
Q Consensus 27 ~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~---~fYek 103 (638)
++++.+ +|++||++.+... ....++|..++|+|+|||+|+|++||++++++|++.|+.++.+.+ +||+|
T Consensus 43 ~~i~~~--~~~lvG~~~l~~~------~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~~~~~Y~k 114 (152)
T PRK07757 43 FYVAEE--EGEIVGCCALHIL------WEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTYQPEFFEK 114 (152)
T ss_pred EEEEEE--CCEEEEEEEEEec------cCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH
Confidence 355554 6899999987642 123567889999999999999999999999999999999987765 99999
Q ss_pred ccCCcEEEEE
Q psy6919 104 WKLSYIFLMV 113 (638)
Q Consensus 104 ~~~GF~~~gv 113 (638)
+||+..+.
T Consensus 115 --~GF~~~~~ 122 (152)
T PRK07757 115 --LGFREVDK 122 (152)
T ss_pred --CCCEEccc
Confidence 99987554
No 30
>PRK03624 putative acetyltransferase; Provisional
Probab=98.99 E-value=2.6e-09 Score=97.41 Aligned_cols=80 Identities=28% Similarity=0.309 Sum_probs=64.8
Q ss_pred CCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe---
Q psy6919 22 SQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF--- 98 (638)
Q Consensus 22 ~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~--- 98 (638)
.+...++++.+ ++++||++.+.. .....++..++|+|+|||+|+|++||+.++++|++.|+..+.+.+
T Consensus 42 ~~~~~~~v~~~--~~~~vG~~~~~~-------~~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~ 112 (140)
T PRK03624 42 HDPSLFLVAEV--GGEVVGTVMGGY-------DGHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVRED 112 (140)
T ss_pred CCCceEEEEEc--CCcEEEEEEeec-------cCCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecC
Confidence 33445667764 689999987542 123356788999999999999999999999999999999998886
Q ss_pred -----eccccccCCcEEEE
Q psy6919 99 -----SFYTCWKLSYIFLM 112 (638)
Q Consensus 99 -----~fYek~~~GF~~~g 112 (638)
+||+| +||+..+
T Consensus 113 N~~~~~~y~k--~GF~~~~ 129 (140)
T PRK03624 113 NDAVLGFYEA--LGYEEQD 129 (140)
T ss_pred cHHHHHHHHH--cCCcccc
Confidence 69999 9997644
No 31
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.98 E-value=4.2e-09 Score=103.87 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=66.4
Q ss_pred EEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-------
Q psy6919 26 LVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF------- 98 (638)
Q Consensus 26 ~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~------- 98 (638)
.++++.+ .+|++||++.+... ....++|..++|+|+|||||+|++|+++++++|++.|+.++.+.+
T Consensus 102 ~~~v~~~-~~g~~vG~~~l~~~------~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a 174 (194)
T PRK10975 102 QCLLLRD-ASGQIQGFVTLREL------NDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAA 174 (194)
T ss_pred cEEEEEc-CCCCEEEEEEEEec------CCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHH
Confidence 3455543 36899999877532 123477889999999999999999999999999999999999986
Q ss_pred -eccccccCCcEEEEEEE
Q psy6919 99 -SFYTCWKLSYIFLMVIR 115 (638)
Q Consensus 99 -~fYek~~~GF~~~gv~k 115 (638)
+||+| +||+..++..
T Consensus 175 ~~~yek--~Gf~~~~~~~ 190 (194)
T PRK10975 175 LRLYIR--SGANIESTAY 190 (194)
T ss_pred HHHHHH--CCCeEeEEEe
Confidence 79999 9999877653
No 32
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.97 E-value=3.5e-09 Score=120.71 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=76.5
Q ss_pred CCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe----
Q psy6919 23 QDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF---- 98 (638)
Q Consensus 23 ~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~---- 98 (638)
++..++|++++.+|++||++...............++|.+|+|+|+|||+|||++||++++++++++||..+.|.+
T Consensus 121 ~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N 200 (547)
T TIGR03103 121 RAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDN 200 (547)
T ss_pred CCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCC
Confidence 4456678875346899999875432222222333467999999999999999999999999999999999999987
Q ss_pred ----eccccccCCcEEEEEEEeehhheeeecccccCCc
Q psy6919 99 ----SFYTCWKLSYIFLMVIRSQVLKMVYTAGYLIGHP 132 (638)
Q Consensus 99 ----~fYek~~~GF~~~gv~k~~~~~~vyk~aY~~~~~ 132 (638)
+||+| +||+...+.-..-+... -.+++++..
T Consensus 201 ~~Ai~fY~k--lGf~~~~~y~~~d~~~~-~~~~~~g~~ 235 (547)
T TIGR03103 201 EQAIALYEK--LGFRRIPVFALKRKNAI-NERLFSGPA 235 (547)
T ss_pred HHHHHHHHH--CCCEEeeEEEEeccCCc-CcccccCCC
Confidence 79999 99976543322111111 455666543
No 33
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.96 E-value=1.9e-09 Score=104.65 Aligned_cols=78 Identities=21% Similarity=0.320 Sum_probs=64.5
Q ss_pred EEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe---eccc
Q psy6919 26 LVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF---SFYT 102 (638)
Q Consensus 26 ~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~---~fYe 102 (638)
.++++++ .++++||++.+.... ...+.|..++|+|+|||+|||++||++++++|+++||.++.+.+ +||+
T Consensus 46 ~~~va~~-~~~~iiG~~~~~~~~------~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~~~~fY~ 118 (169)
T PRK07922 46 EFWVAEH-LDGEVVGCGALHVMW------EDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTFEVEFFA 118 (169)
T ss_pred cEEEEEe-cCCcEEEEEEEeecC------CCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEeccHHHHH
Confidence 3567762 268999998775421 23567889999999999999999999999999999999998765 9999
Q ss_pred cccCCcEEEE
Q psy6919 103 CWKLSYIFLM 112 (638)
Q Consensus 103 k~~~GF~~~g 112 (638)
| +||+..+
T Consensus 119 k--~GF~~~~ 126 (169)
T PRK07922 119 R--HGFVEID 126 (169)
T ss_pred H--CCCEECc
Confidence 9 9998744
No 34
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.96 E-value=2.6e-09 Score=105.24 Aligned_cols=74 Identities=11% Similarity=0.002 Sum_probs=63.6
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe--------eccccccC
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF--------SFYTCWKL 106 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~--------~fYek~~~ 106 (638)
+|++||++.+.... ...++|..++|+|+|||||+|++|+++++++|++.|+.+|.+.+ +||+| +
T Consensus 107 ~g~iiG~i~l~~~~------~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k--l 178 (191)
T TIGR02382 107 SGDPRGYVTLRELN------DTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR--S 178 (191)
T ss_pred CCeEEEEEEEEecC------CCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH--c
Confidence 68999998875321 23467889999999999999999999999999999999999986 89999 9
Q ss_pred CcEEEEEEEe
Q psy6919 107 SYIFLMVIRS 116 (638)
Q Consensus 107 GF~~~gv~k~ 116 (638)
||+..++-+.
T Consensus 179 GF~~~~~~~~ 188 (191)
T TIGR02382 179 GANIESTAYW 188 (191)
T ss_pred CCccccceee
Confidence 9988776544
No 35
>PRK10314 putative acyltransferase; Provisional
Probab=98.96 E-value=2.1e-09 Score=102.67 Aligned_cols=72 Identities=15% Similarity=0.313 Sum_probs=60.0
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHc-CCeEEEEEe-----eccccccCCc
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHF-QCYKLTLDF-----SFYTCWKLSY 108 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~-G~~~I~L~~-----~fYek~~~GF 108 (638)
++++||++.+.... .....++|.+|+|+|+|||+|||++||+++++++++. ++..+.|.+ .||+| +||
T Consensus 56 ~~~~vg~~r~~~~~----~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k--~GF 129 (153)
T PRK10314 56 NDELVAYARILKSD----DDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS--FGF 129 (153)
T ss_pred CCEEEEEEEEecCC----CCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH--CCC
Confidence 68999999886421 1223578999999999999999999999999999885 788898886 79999 999
Q ss_pred EEEE
Q psy6919 109 IFLM 112 (638)
Q Consensus 109 ~~~g 112 (638)
+..+
T Consensus 130 ~~~g 133 (153)
T PRK10314 130 IPVT 133 (153)
T ss_pred EECC
Confidence 7644
No 36
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=6.4e-09 Score=100.82 Aligned_cols=104 Identities=22% Similarity=0.261 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeee-EEEECCCCcCCcHHHHHHHHHHH
Q psy6919 6 TSNVFHFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIE-EVVVDDTYRGKELGKLLIAVLVK 84 (638)
Q Consensus 6 ~~s~e~~~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~-~l~V~p~yRGkGIGk~Lm~~l~e 84 (638)
+.+.+.+.++|....... +.++|+++ .+|+++|++.+...+. .+++...++ .|+|+|++||+|||++||+.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~g-~p~~V~~~-~~g~v~G~a~~~~fr~---r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~ 108 (169)
T COG1247 34 PVSLEERAAWFSGRTRDG-YPVVVAEE-EDGKVLGYASAGPFRE---RPAYRHTVELSIYLDPAARGKGLGKKLLQALIT 108 (169)
T ss_pred CCCHHHHHHHHHhcccCC-ceEEEEEc-CCCeEEEEEEeeeccC---ccccceEEEEEEEECcccccccHHHHHHHHHHH
Confidence 457788888888766543 77788875 3699999998865432 345555555 69999999999999999999999
Q ss_pred HHHHcCCeEEEEEe--------eccccccCCcEEEEEEEe
Q psy6919 85 LAKHFQCYKLTLDF--------SFYTCWKLSYIFLMVIRS 116 (638)
Q Consensus 85 ~Ar~~G~~~I~L~~--------~fYek~~~GF~~~gv~k~ 116 (638)
.|+.+|...+.-.+ .|.++ +||+..|..+.
T Consensus 109 ~~~~~g~~~lva~I~~~n~aSi~lh~~--~GF~~~G~~~~ 146 (169)
T COG1247 109 EARALGVRELVAGIESDNLASIALHEK--LGFEEVGTFPE 146 (169)
T ss_pred HHHhCCeEEEEEEEcCCCcHhHHHHHH--CCCEEeccccc
Confidence 99999997764433 79999 99999887655
No 37
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.94 E-value=7e-09 Score=97.43 Aligned_cols=101 Identities=24% Similarity=0.303 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHhc-CCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHH
Q psy6919 7 SNVFHFAERFHRMKA-SQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKL 85 (638)
Q Consensus 7 ~s~e~~~~~f~~~~~-~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~ 85 (638)
.+.+.+.+.++.+.. .....++|.+ .+|++||++.+..... ....+ ...++|.|+||++|+|+.|++.++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~iiG~~~~~~~~~----~~~~~-~~~~~v~~~~~~~gig~~l~~~l~~~ 104 (155)
T PF13420_consen 32 DSEESFERWIESIIDSSKQRLFLVAE--EDGKIIGYVSLRDIDP----YNHTA-ELSIYVSPDYRGKGIGRKLLDELIEY 104 (155)
T ss_dssp S-HHHHHHHHHHHHHHHTTEEEEEEE--CTTEEEEEEEEEESSS----GTTEE-EEEEEEEGGGTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcccCCCcEEEEEE--cCCcEEEEEEEEeeec----cCCEE-EEeeEEChhHCCCcHHHHHHHHHHHH
Confidence 355667777777642 2234444443 3799999998864321 22233 34488889999999999999999999
Q ss_pred H-HHcCCeEEEEEe--------eccccccCCcEEEEEEEe
Q psy6919 86 A-KHFQCYKLTLDF--------SFYTCWKLSYIFLMVIRS 116 (638)
Q Consensus 86 A-r~~G~~~I~L~~--------~fYek~~~GF~~~gv~k~ 116 (638)
| ++.|+.+|.+.+ .||++ +||+..|+.++
T Consensus 105 af~~~~~~~i~~~v~~~N~~~i~~~~~--~GF~~~g~~~~ 142 (155)
T PF13420_consen 105 AFKELGIHKIYLEVFSSNEKAINFYKK--LGFEEEGELKD 142 (155)
T ss_dssp H-HHTT-CEEEEEEETT-HHHHHHHHH--TTEEEEEEEEE
T ss_pred hhhccCeEEEEEEEecCCHHHHHHHHh--CCCEEEEEEec
Confidence 9 999999999987 89999 99999998877
No 38
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.94 E-value=2.6e-09 Score=112.73 Aligned_cols=74 Identities=27% Similarity=0.398 Sum_probs=64.1
Q ss_pred CEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-----
Q psy6919 24 DYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----- 98 (638)
Q Consensus 24 ~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----- 98 (638)
++.++++++ ++++||++.+.. .+|..|+|+|+|||+|+|++||++++++|+++|+.++.|.+
T Consensus 5 ~~~~~v~~~--~~~iVG~~~l~~-----------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~ 71 (297)
T cd02169 5 DYTVGIFDD--AGELIATGSIAG-----------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNA 71 (297)
T ss_pred cEEEEEEEE--CCEEEEEEEecc-----------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHH
Confidence 456677654 689999987731 25889999999999999999999999999999999999987
Q ss_pred eccccccCCcEEEE
Q psy6919 99 SFYTCWKLSYIFLM 112 (638)
Q Consensus 99 ~fYek~~~GF~~~g 112 (638)
.||+| +||+..+
T Consensus 72 ~fYek--~GF~~~~ 83 (297)
T cd02169 72 KFFRG--LGFKELA 83 (297)
T ss_pred HHHHH--CCCEEec
Confidence 79999 9998766
No 39
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.92 E-value=9.6e-09 Score=96.79 Aligned_cols=87 Identities=10% Similarity=0.193 Sum_probs=66.4
Q ss_pred CCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHH-cCCeEEEEEe---
Q psy6919 23 QDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKH-FQCYKLTLDF--- 98 (638)
Q Consensus 23 ~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~-~G~~~I~L~~--- 98 (638)
++...+++++ +|++||++.+...... .....+.+ .++|+|+|||+|||++||++++++|++ .|+.++.+.+
T Consensus 49 ~~~~~~v~~~--~~~~vG~~~~~~~~~~--~~~~~~~~-~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~ 123 (162)
T PRK10140 49 PGIKQLVACI--DGDVVGHLTIDVQQRP--RRSHVADF-GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVD 123 (162)
T ss_pred CCcEEEEEEE--CCEEEEEEEEeccccc--ccceEEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcC
Confidence 3345567754 6899999988643210 01112222 599999999999999999999999998 6999998876
Q ss_pred -----eccccccCCcEEEEEEEe
Q psy6919 99 -----SFYTCWKLSYIFLMVIRS 116 (638)
Q Consensus 99 -----~fYek~~~GF~~~gv~k~ 116 (638)
+||+| +||+..|..+.
T Consensus 124 N~~a~~~y~k--~GF~~~g~~~~ 144 (162)
T PRK10140 124 NAPAIKVYKK--YGFEIEGTGKK 144 (162)
T ss_pred CHHHHHHHHH--CCCEEEeeccc
Confidence 79999 99999887655
No 40
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.92 E-value=4.9e-09 Score=100.34 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=64.1
Q ss_pred EEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-------
Q psy6919 26 LVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF------- 98 (638)
Q Consensus 26 ~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~------- 98 (638)
.++++++ .++++||++.+.... ......++..++|+|+|||+|||++|+++++++|++.++.++.+.+
T Consensus 40 ~~~v~~~-~~~~ivG~~~~~~~~----~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a 114 (157)
T TIGR02406 40 TSIVAES-EGGEIVGFVSGYLRP----DRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQAS 114 (157)
T ss_pred cEEEEEc-CCCeEEEEEEEEecC----CCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHH
Confidence 3456653 367999998654322 1233567889999999999999999999999999999999999887
Q ss_pred -eccccccCCcEEEE
Q psy6919 99 -SFYTCWKLSYIFLM 112 (638)
Q Consensus 99 -~fYek~~~GF~~~g 112 (638)
+||+| +||+...
T Consensus 115 ~~ly~k--~G~~~~~ 127 (157)
T TIGR02406 115 RALFKA--LARRRGV 127 (157)
T ss_pred HHHHHH--hCcccCC
Confidence 79999 9997644
No 41
>KOG3397|consensus
Probab=98.85 E-value=1.3e-08 Score=97.14 Aligned_cols=138 Identities=18% Similarity=0.197 Sum_probs=90.0
Q ss_pred CCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe----eccccccCCc
Q psy6919 33 TRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----SFYTCWKLSY 108 (638)
Q Consensus 33 e~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----~fYek~~~GF 108 (638)
|...+|||-+.+.... .....++++.|+|+.++||+|.|+.||+.++.|+|..|..++.|++ +||++ +||
T Consensus 63 E~~~~VigH~rLS~i~----n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ~~FYe~--lGY 136 (225)
T KOG3397|consen 63 EENDEVLGHSRLSHLP----NRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQCRFYES--LGY 136 (225)
T ss_pred ccccceeeeeccccCC----CCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccchhhhhh--hcc
Confidence 4467899988876422 2456789999999999999999999999999999999999999997 99999 999
Q ss_pred EEEEEEEeehhheeeecccccCCchhHhHHHHHHhhhhhcCcccccccccchhhhh-cccC-CCCCCcccccccccCCCC
Q psy6919 109 IFLMVIRSQVLKMVYTAGYLIGHPEAKTKLLDTARKLYTKKTQSVVQMKKMELEFC-QSAA-SRAPSEAYMPILVNEAPS 186 (638)
Q Consensus 109 ~~~gv~k~~~~~~vyk~aY~~~~~e~~i~~l~~~~~~~~~~~~~~~~~~~~~~~fc-~~~~-~~~~~~~~~~v~le~~p~ 186 (638)
..+.-+-. |-. .+ -.+-.+........++.--.-++.+++-+-- ...+ |+.+-.--++-.+-++|+
T Consensus 137 e~c~Pi~~------~~~----~~--c~LPa~~~~~~~~a~~p~~~~k~~~~~a~~~~~~~~~pp~pppp~~p~~~t~s~s 204 (225)
T KOG3397|consen 137 EKCDPIVH------STT----AT--CILPAMNHFQNAAASNPSFLSKIAQPSASSTVSASAPPPPPPPPMAPKMVTRSTS 204 (225)
T ss_pred cccCceec------ccc----cc--eechhhhhhhccccCCCCchhhcCCcccccccCCCCCCCcccCCCCccceecCCC
Confidence 66443211 111 11 1111222233344444444556777775555 2222 333333345555556666
Q ss_pred CC
Q psy6919 187 DF 188 (638)
Q Consensus 187 ~~ 188 (638)
.+
T Consensus 205 ~~ 206 (225)
T KOG3397|consen 205 PI 206 (225)
T ss_pred CC
Confidence 55
No 42
>PLN02825 amino-acid N-acetyltransferase
Probab=98.83 E-value=9e-09 Score=115.78 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=66.5
Q ss_pred EEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe----eccc
Q psy6919 27 VTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----SFYT 102 (638)
Q Consensus 27 ~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----~fYe 102 (638)
++|++. ||+||||+.+.... ....++|..++|+|+|||+|+|++||++++++|+++||.++.|.+ +||+
T Consensus 409 f~V~e~--Dg~IVG~aal~~~~-----~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt~a~~fY~ 481 (515)
T PLN02825 409 FVVVER--EGSIIACAALFPFF-----EEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLTTRTADWFV 481 (515)
T ss_pred EEEEEE--CCEEEEEEEEEeec-----CCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeCcHHHHHH
Confidence 466764 79999998875422 234678999999999999999999999999999999999999976 8999
Q ss_pred cccCCcEEEEE
Q psy6919 103 CWKLSYIFLMV 113 (638)
Q Consensus 103 k~~~GF~~~gv 113 (638)
+ +||...++
T Consensus 482 k--~GF~~~~~ 490 (515)
T PLN02825 482 R--RGFSECSI 490 (515)
T ss_pred H--CCCEEeCh
Confidence 9 99987654
No 43
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.83 E-value=1.2e-08 Score=95.36 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=61.7
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe--------eccccccC
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF--------SFYTCWKL 106 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~--------~fYek~~~ 106 (638)
++++||++.+.... ..+.+..++|+|+|||+|+|+.||+++++.|++.|+..+.+.+ +||+| +
T Consensus 48 ~~~~vG~~~~~~~~-------~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k--~ 118 (146)
T PRK09491 48 NGQMAAFAITQVVL-------DEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYES--L 118 (146)
T ss_pred CCeEEEEEEEEeec-------CceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHH--c
Confidence 68999998764311 2356788999999999999999999999999999999999876 79999 9
Q ss_pred CcEEEEEEEe
Q psy6919 107 SYIFLMVIRS 116 (638)
Q Consensus 107 GF~~~gv~k~ 116 (638)
||+..+..+.
T Consensus 119 Gf~~~~~~~~ 128 (146)
T PRK09491 119 GFNEVTIRRN 128 (146)
T ss_pred CCEEeeeeec
Confidence 9988776544
No 44
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.78 E-value=1.4e-08 Score=117.55 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=65.2
Q ss_pred EEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe---eccc
Q psy6919 26 LVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF---SFYT 102 (638)
Q Consensus 26 ~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~---~fYe 102 (638)
.++|+++ +|++||++.+... ....++|.+++|+|+|||||||++||++++++|+++||..+.+.+ .||+
T Consensus 504 ~~~Va~~--~g~IVG~~~l~~~------~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~a~~FYe 575 (614)
T PRK12308 504 SFAVAEH--HGEVTGCASLYIY------DSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTRVPEFFM 575 (614)
T ss_pred cEEEEEE--CCEEEEEEEEEEc------CCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeCcHHHHH
Confidence 3466764 6899999887542 223578999999999999999999999999999999999998887 7999
Q ss_pred cccCCcEEEE
Q psy6919 103 CWKLSYIFLM 112 (638)
Q Consensus 103 k~~~GF~~~g 112 (638)
| +||+..+
T Consensus 576 k--~GF~~~~ 583 (614)
T PRK12308 576 K--QGFSPTS 583 (614)
T ss_pred H--CCCEECC
Confidence 9 9998755
No 45
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=98.78 E-value=2.3e-08 Score=77.27 Aligned_cols=48 Identities=27% Similarity=0.279 Sum_probs=44.5
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEE
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFD 621 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd 621 (638)
|+||+|++..++ +.++|++.|||++|+|+|++++|.++++.+||+|++
T Consensus 1 ~lG~~V~v~~~~-~~~~G~~~gId~~G~L~v~~~~g~~~~i~sGdv~~r 48 (48)
T PF02237_consen 1 TLGQEVRVETGD-GEIEGIAEGIDDDGALLVRTEDGSIRTISSGDVSLR 48 (48)
T ss_dssp STTSEEEEEETS-CEEEEEEEEEETTSEEEEEETTEEEEEESSSEEEEE
T ss_pred CCCCEEEEEECC-eEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEeC
Confidence 689999999865 578999999999999999999999999999999986
No 46
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.75 E-value=2.3e-08 Score=110.85 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=65.0
Q ss_pred EEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe----eccc
Q psy6919 27 VTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----SFYT 102 (638)
Q Consensus 27 ~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----~fYe 102 (638)
++++++ ++++||++.+.... ....++|..++|+|+|||+|+|++||++++++|+++||..+.+.+ +||+
T Consensus 324 ~~V~~~--dg~iVG~~~~~~~~-----~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~~a~~fY~ 396 (429)
T TIGR01890 324 FSIIEH--DGNIIGCAALYPYA-----EEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTTRTGHWFR 396 (429)
T ss_pred EEEEEE--CCEEEEEEEEEecC-----CCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeecchHHHHH
Confidence 456654 68999999875421 234578999999999999999999999999999999999987654 8999
Q ss_pred cccCCcEEEEE
Q psy6919 103 CWKLSYIFLMV 113 (638)
Q Consensus 103 k~~~GF~~~gv 113 (638)
+ +||+..++
T Consensus 397 k--~GF~~~g~ 405 (429)
T TIGR01890 397 E--RGFQTASV 405 (429)
T ss_pred H--CCCEECCh
Confidence 9 99988765
No 47
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.73 E-value=2.9e-08 Score=110.48 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=65.1
Q ss_pred EEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe----eccc
Q psy6919 27 VTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----SFYT 102 (638)
Q Consensus 27 ~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----~fYe 102 (638)
++++++ ++++||++.+.... ....++|..++|+|+|||+|+|++||++++++|+++||..+.+.+ +||+
T Consensus 336 ~~va~~--dg~iVG~~~~~~~~-----~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~~~a~~fY~ 408 (441)
T PRK05279 336 FTVIER--DGLIIGCAALYPFP-----EEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLTTRTAHWFL 408 (441)
T ss_pred EEEEEE--CCEEEEEEEEEEcC-----CCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHH
Confidence 466664 68999998765321 124578999999999999999999999999999999999997765 8999
Q ss_pred cccCCcEEEEE
Q psy6919 103 CWKLSYIFLMV 113 (638)
Q Consensus 103 k~~~GF~~~gv 113 (638)
+ +||+..++
T Consensus 409 k--~GF~~~g~ 417 (441)
T PRK05279 409 E--RGFVPVDV 417 (441)
T ss_pred H--CcCEECCh
Confidence 9 99988765
No 48
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.73 E-value=1.5e-07 Score=88.59 Aligned_cols=90 Identities=21% Similarity=0.234 Sum_probs=68.1
Q ss_pred cCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHc-CCeEEEEEe-
Q psy6919 21 ASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHF-QCYKLTLDF- 98 (638)
Q Consensus 21 ~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~-G~~~I~L~~- 98 (638)
..+...++|++. +|+++|++.+...............+..++|+|+|||||+|+.+++.+++++.+. ++.++.+++
T Consensus 44 ~~~~~~~~v~~~--dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~ 121 (152)
T PF13523_consen 44 ADPGHHPYVAED--DGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPH 121 (152)
T ss_dssp HTTTEEEEEEEE--TTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEB
T ss_pred ccCCceEEEEEE--CCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence 456677788875 7999999876431111111334556888999999999999999999999999987 899999997
Q ss_pred -------eccccccCCcEEEEEE
Q psy6919 99 -------SFYTCWKLSYIFLMVI 114 (638)
Q Consensus 99 -------~fYek~~~GF~~~gv~ 114 (638)
++|+| .||+..+..
T Consensus 122 ~~N~~~~~~~~k--~GF~~~g~~ 142 (152)
T PF13523_consen 122 EDNTRAIRLYEK--AGFRKVGEF 142 (152)
T ss_dssp TT-HHHHHHHHH--TT-EEEEEE
T ss_pred cCCHHHHHHHHH--cCCEEeeEE
Confidence 89999 999998876
No 49
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.72 E-value=1.5e-07 Score=88.34 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=77.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHH
Q psy6919 5 PTSNVFHFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVK 84 (638)
Q Consensus 5 p~~s~e~~~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e 84 (638)
+..+.+..+..++.+...+++..+++.. +|++||++.+..... ....+.+ .++++|.+| +|+|+++++.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~vG~~~~~~~~~----~~~~~~~-g~~~~~~~~-~G~g~~~~~~~~~ 102 (156)
T TIGR03585 31 HLIDWEEHLHFIEALKQDPNRRYWIVCQ--ESRPIGVISFTDINL----VHKSAFW-GIYANPFCK-PGVGSVLEEAALE 102 (156)
T ss_pred CCCCHHHHHHHHHHhhcCCCceEEEEEE--CCEEEEEEEEEecCh----hhCeEEE-EEEeChhhh-cCchHHHHHHHHH
Confidence 4456677777777776665555666654 699999988764221 1122333 466999999 9999999999999
Q ss_pred HHHH-cCCeEEEEEe--------eccccccCCcEEEEEEEe
Q psy6919 85 LAKH-FQCYKLTLDF--------SFYTCWKLSYIFLMVIRS 116 (638)
Q Consensus 85 ~Ar~-~G~~~I~L~~--------~fYek~~~GF~~~gv~k~ 116 (638)
+|.+ .++.++.+.+ +||+| +||+..++.+.
T Consensus 103 ~a~~~~~~~~i~~~v~~~N~~s~~~y~k--~Gf~~~g~~~~ 141 (156)
T TIGR03585 103 YAFEHLGLHKLSLEVLEFNNKALKLYEK--FGFEREGVFRQ 141 (156)
T ss_pred HHHhhCCeeEEEEEEeccCHHHHHHHHH--cCCeEeeeehh
Confidence 9986 6999999986 89999 99999887765
No 50
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=98.70 E-value=2.8e-08 Score=94.20 Aligned_cols=75 Identities=24% Similarity=0.311 Sum_probs=64.6
Q ss_pred EEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe----eccc
Q psy6919 27 VTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----SFYT 102 (638)
Q Consensus 27 ~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----~fYe 102 (638)
+++++. +|+|||++.+... .....+.+..|+|+|+|||+|+|..|+++++..|++.|.+++.+-+ .|++
T Consensus 42 F~i~E~--~g~viGC~aL~~~-----~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt~~~~~F~ 114 (153)
T COG1246 42 FTIIER--DGKVIGCAALHPV-----LEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTTRSPEFFA 114 (153)
T ss_pred heeeee--CCcEEEEEeeccc-----CccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeecccHHHHH
Confidence 356764 7999999988631 2456889999999999999999999999999999999999987655 8999
Q ss_pred cccCCcEE
Q psy6919 103 CWKLSYIF 110 (638)
Q Consensus 103 k~~~GF~~ 110 (638)
+ +||..
T Consensus 115 ~--~GF~~ 120 (153)
T COG1246 115 E--RGFTR 120 (153)
T ss_pred H--cCCeE
Confidence 9 99976
No 51
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=98.69 E-value=2e-07 Score=90.59 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=67.2
Q ss_pred CEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe--ecc
Q psy6919 24 DYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF--SFY 101 (638)
Q Consensus 24 ~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~--~fY 101 (638)
....+||++ +|+|||.+.++...- ........-+.-++|+|+|||||||++||+..++.|+..|+..+.+.- .||
T Consensus 45 ~~LslVA~d--~g~vvG~Il~s~v~~-~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp~YY 121 (171)
T COG3153 45 LTLSLVAED--DGEVVGHILFSPVTV-GGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPTYY 121 (171)
T ss_pred cceeEEEee--CCEEEEEEEEeEEEe-cCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcccc
Confidence 456789986 599999998875321 111223444668999999999999999999999999999999988864 899
Q ss_pred ccccCCcEEEE
Q psy6919 102 TCWKLSYIFLM 112 (638)
Q Consensus 102 ek~~~GF~~~g 112 (638)
.+ +||+...
T Consensus 122 ~r--fGF~~~~ 130 (171)
T COG3153 122 SR--FGFEPAA 130 (171)
T ss_pred cc--cCcEEcc
Confidence 99 9998744
No 52
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.66 E-value=9.9e-08 Score=102.34 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=64.3
Q ss_pred EEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-----ec
Q psy6919 26 LVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF-----SF 100 (638)
Q Consensus 26 ~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~-----~f 100 (638)
+++++.+ +|++||++++.- ..|..|+|+|+|||+|+|++||++++++|+++|+..+.|.+ .|
T Consensus 32 ~~vv~~~--~~~lVg~g~l~g-----------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~f 98 (332)
T TIGR00124 32 IFIAVYE--DEEIIGCGGIAG-----------NVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAAL 98 (332)
T ss_pred EEEEEEE--CCEEEEEEEEec-----------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHH
Confidence 3455554 689999998731 13789999999999999999999999999999999999998 79
Q ss_pred cccccCCcEEEEEEEe
Q psy6919 101 YTCWKLSYIFLMVIRS 116 (638)
Q Consensus 101 Yek~~~GF~~~gv~k~ 116 (638)
|++ +||...+...+
T Consensus 99 y~k--lGF~~i~~~~~ 112 (332)
T TIGR00124 99 FEY--CGFKTLAEAKD 112 (332)
T ss_pred HHH--cCCEEeeeecc
Confidence 999 99988776543
No 53
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.66 E-value=2.8e-07 Score=89.80 Aligned_cols=96 Identities=16% Similarity=0.218 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHH-cC
Q psy6919 12 FAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKH-FQ 90 (638)
Q Consensus 12 ~~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~-~G 90 (638)
..+.+......+....+++.+ +|++||++.+..... ....+.+ +++|+|+|||+|+|+++++.+++++.+ .|
T Consensus 44 ~~~~~~~~~~~~~~~~~~i~~--~g~~iG~~~~~~~~~----~~~~~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~ 116 (186)
T PRK15130 44 LSDLYDKHIHDQSERRFVVEC--DGEKAGLVELVEINH----VHRRAEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLN 116 (186)
T ss_pred HHHHHHHhhhcccCcEEEEEE--CCEEEEEEEEEeecC----CCCeEEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCC
Confidence 333444443333334566654 689999998754321 1123333 699999999999999999999999975 69
Q ss_pred CeEEEEEe--------eccccccCCcEEEEEEEe
Q psy6919 91 CYKLTLDF--------SFYTCWKLSYIFLMVIRS 116 (638)
Q Consensus 91 ~~~I~L~~--------~fYek~~~GF~~~gv~k~ 116 (638)
+.+|.+.+ +||+| +||+..+..++
T Consensus 117 ~~rv~~~v~~~N~~s~~~yek--~GF~~~~~~~~ 148 (186)
T PRK15130 117 LYKLYLIVDKENEKAIHIYRK--LGFEVEGELIH 148 (186)
T ss_pred ceEEEEEEccCCHHHHHHHHH--CCCEEEEEEeh
Confidence 99999876 89999 99999887765
No 54
>PRK01346 hypothetical protein; Provisional
Probab=98.64 E-value=2e-07 Score=102.53 Aligned_cols=83 Identities=16% Similarity=0.059 Sum_probs=66.0
Q ss_pred EEEEEECCCCeEEEEEEEEEeeccccc--cccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe---ecc
Q psy6919 27 VTVIEDTRTKQVIGTGSLILEQKFIHE--CALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF---SFY 101 (638)
Q Consensus 27 ~~Vaede~~gkIVG~~~l~~~~~~~~~--~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~---~fY 101 (638)
.+++.+ ++++||++.+......... ..+.+.|..|+|+|+|||+|||++||+++++.++++|+..+.|.+ +||
T Consensus 49 ~~va~~--~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~~~~Y 126 (411)
T PRK01346 49 TLGAFD--GDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASEGGIY 126 (411)
T ss_pred eEEEEE--CCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCchhhH
Confidence 456654 6899999887543211111 125688999999999999999999999999999999999888886 799
Q ss_pred ccccCCcEEEEE
Q psy6919 102 TCWKLSYIFLMV 113 (638)
Q Consensus 102 ek~~~GF~~~gv 113 (638)
++ +||.....
T Consensus 127 ~r--~Gf~~~~~ 136 (411)
T PRK01346 127 GR--FGYGPATY 136 (411)
T ss_pred hh--CCCeeccc
Confidence 99 99976443
No 55
>PRK09831 putative acyltransferase; Provisional
Probab=98.63 E-value=9e-08 Score=90.00 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=55.8
Q ss_pred EEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-----ecc
Q psy6919 27 VTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF-----SFY 101 (638)
Q Consensus 27 ~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~-----~fY 101 (638)
++|+.+ +|++||++.+. ..++..++|+|+|||+|||++||+++++.|++ +.+.+ +||
T Consensus 55 ~~v~~~--~~~iiG~~~~~-----------~~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y 116 (147)
T PRK09831 55 VRVAVI--NAQPVGFITCI-----------EHYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFF 116 (147)
T ss_pred eEEEEE--CCEEEEEEEeh-----------hceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHH
Confidence 456654 68999998763 13578899999999999999999999999876 33332 899
Q ss_pred ccccCCcEEEEEEE
Q psy6919 102 TCWKLSYIFLMVIR 115 (638)
Q Consensus 102 ek~~~GF~~~gv~k 115 (638)
++ +||...+..+
T Consensus 117 ~k--~Gf~~~g~~~ 128 (147)
T PRK09831 117 ER--YGFQTVKQQR 128 (147)
T ss_pred HH--CCCEEeeccc
Confidence 99 9999888765
No 56
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=98.62 E-value=2.9e-07 Score=90.44 Aligned_cols=95 Identities=7% Similarity=0.136 Sum_probs=69.1
Q ss_pred HHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHH-cCCeEE
Q psy6919 16 FHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKH-FQCYKL 94 (638)
Q Consensus 16 f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~-~G~~~I 94 (638)
+......+....+++.+..++++||++.+..... .....-..++.|+|+|||||+|+.+++.++++|.+ .|+++|
T Consensus 66 ~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~~~~----~~~~~~eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i 141 (194)
T PRK10809 66 INEFHKQGSAFYFALLDPDEKEIIGVANFSNVVR----GSFHACYLGYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRI 141 (194)
T ss_pred HHHHHhcCcEEEEEEEECCCCeEEEEEEEEeecC----CCeeeEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEE
Confidence 4443334443344544434679999998764221 11111123588999999999999999999999987 599999
Q ss_pred EEEe--------eccccccCCcEEEEEEEe
Q psy6919 95 TLDF--------SFYTCWKLSYIFLMVIRS 116 (638)
Q Consensus 95 ~L~~--------~fYek~~~GF~~~gv~k~ 116 (638)
.+.+ ++|+| +||+..++.++
T Consensus 142 ~~~v~~~N~~S~~l~ek--~Gf~~~g~~~~ 169 (194)
T PRK10809 142 MANYMPHNKRSGDLLAR--LGFEKEGYAKD 169 (194)
T ss_pred EEEeeCCCHHHHHHHHH--CCCcEEeeecc
Confidence 9997 89999 99999888765
No 57
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.59 E-value=1.4e-07 Score=98.50 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=62.7
Q ss_pred EEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe--------
Q psy6919 27 VTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF-------- 98 (638)
Q Consensus 27 ~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~-------- 98 (638)
++++.++.++++||++.+.... .....++|..++|+|+|||||||++||+++++++++.|+..+.+.+
T Consensus 200 ~~~a~~~~~~~~vG~~~~~~~~----~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~ 275 (292)
T TIGR03448 200 LFLAFDDAPGELLGFHWTKVHP----DEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAV 275 (292)
T ss_pred eEEEEECCCCcEEEEEEEEecC----CCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHH
Confidence 3555542258999986543221 1123466778899999999999999999999999999999998876
Q ss_pred eccccccCCcEEEEE
Q psy6919 99 SFYTCWKLSYIFLMV 113 (638)
Q Consensus 99 ~fYek~~~GF~~~gv 113 (638)
+||+| +||+..+.
T Consensus 276 ~~y~k--~GF~~~~~ 288 (292)
T TIGR03448 276 RTYEK--LGFTVAEV 288 (292)
T ss_pred HHHHH--cCCEEccc
Confidence 79999 99977543
No 58
>PRK10514 putative acetyltransferase; Provisional
Probab=98.59 E-value=2.2e-07 Score=86.35 Aligned_cols=87 Identities=23% Similarity=0.303 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHH
Q psy6919 8 NVFHFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAK 87 (638)
Q Consensus 8 s~e~~~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar 87 (638)
+.+.+.+.+..+..... ++++.. .++++||++.+.. .++..++|+|+|||||+|++||+++++.++
T Consensus 34 ~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~iG~~~~~~-----------~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~ 99 (145)
T PRK10514 34 DRAEIEELVRSFLPEAP--LWVAVD-ERDQPVGFMLLSG-----------GHMEALFVDPDVRGCGVGRMLVEHALSLHP 99 (145)
T ss_pred hHHHHHHHHHHHhccCc--eEEEEe-cCCcEEEEEEEec-----------CcEeEEEECHHhccCCHHHHHHHHHHHhcc
Confidence 34445555554443322 334432 2689999986531 246789999999999999999999998753
Q ss_pred HcCCeEEEEEe--------eccccccCCcEEEEEEE
Q psy6919 88 HFQCYKLTLDF--------SFYTCWKLSYIFLMVIR 115 (638)
Q Consensus 88 ~~G~~~I~L~~--------~fYek~~~GF~~~gv~k 115 (638)
++.+.+ +||+| +||+..++..
T Consensus 100 -----~i~~~v~~~N~~a~~~yek--~Gf~~~~~~~ 128 (145)
T PRK10514 100 -----ELTTDVNEQNEQAVGFYKK--MGFKVTGRSE 128 (145)
T ss_pred -----ccEEEeecCCHHHHHHHHH--CCCEEecccc
Confidence 344443 89999 9998877643
No 59
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=98.57 E-value=9.4e-07 Score=85.55 Aligned_cols=101 Identities=8% Similarity=0.014 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHh---cCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHH
Q psy6919 7 SNVFHFAERFHRMK---ASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLV 83 (638)
Q Consensus 7 ~s~e~~~~~f~~~~---~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~ 83 (638)
.+.++.++.++... .......+++.+ +|++||++.+..... ....+.| ...|+|+|||||+|+++++.++
T Consensus 46 ~~~~~~~~~i~~~~~~~~~~~~~~~~i~~--~~~~iG~~~l~~~~~----~~~~~~i-g~~i~~~~~g~G~~tea~~~l~ 118 (179)
T PRK10151 46 QSEEDTRKTVQGNVMLHQRGYAKMFMIFK--EDELIGVLSFNRIEP----LNKTAYI-GYWLDESHQGQGIISQALQALI 118 (179)
T ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEEE--CCEEEEEEEEEeecc----CCCceEE-EEEEChhhcCCcHHHHHHHHHH
Confidence 46677777776542 222223455554 689999998754321 1123444 4679999999999999999999
Q ss_pred HHHHH-cCCeEEEEEe--------eccccccCCcEEEEEEEe
Q psy6919 84 KLAKH-FQCYKLTLDF--------SFYTCWKLSYIFLMVIRS 116 (638)
Q Consensus 84 e~Ar~-~G~~~I~L~~--------~fYek~~~GF~~~gv~k~ 116 (638)
++|.+ .|.+++.+.+ ++|+| +||+..|+.++
T Consensus 119 ~~~~~~~~~~ri~~~v~~~N~~S~~v~ek--~Gf~~~g~~~~ 158 (179)
T PRK10151 119 HHYAQSGELRRFVIKCRVDNPASNQVALR--NGFTLEGCLKQ 158 (179)
T ss_pred HHHHhhCCccEEEEEEcCCCHHHHHHHHH--CCCEEEeEecc
Confidence 99986 5799998876 79999 99999998876
No 60
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.56 E-value=2.7e-07 Score=98.47 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=58.3
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe----------eccccc
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----------SFYTCW 104 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----------~fYek~ 104 (638)
++.+||++.+.. .....+|.+++|+|.+||+|||++||++++++|++.||.++.|++ .||++
T Consensus 242 d~givG~~~~~~-------~~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~- 313 (320)
T TIGR01686 242 DSGIIGIFVFEK-------KEGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQ- 313 (320)
T ss_pred CCceEEEEEEEe-------cCCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHH-
Confidence 568999987642 234568999999999999999999999999999999999999965 69999
Q ss_pred cCCcEE
Q psy6919 105 KLSYIF 110 (638)
Q Consensus 105 ~~GF~~ 110 (638)
+||..
T Consensus 314 -~GF~~ 318 (320)
T TIGR01686 314 -IGFED 318 (320)
T ss_pred -cCCcc
Confidence 99964
No 61
>PRK13688 hypothetical protein; Provisional
Probab=98.52 E-value=3.4e-07 Score=88.07 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=55.8
Q ss_pred EEEEEEEECCCCeEEEEEEEEEeec----cccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe--
Q psy6919 25 YLVTVIEDTRTKQVIGTGSLILEQK----FIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF-- 98 (638)
Q Consensus 25 ~~~~Vaede~~gkIVG~~~l~~~~~----~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~-- 98 (638)
..++++.+ ++++||++.+..... +.......++|.+++|+|+|||||||++||+++ ++.++. +.+..
T Consensus 45 ~~~~~~~~--~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a----~~~~~~-~~~~~~~ 117 (156)
T PRK13688 45 SPFYGIYY--GDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFA----KSFQLP-IKTIARN 117 (156)
T ss_pred CCEEEEEE--CCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHH----HHhCCe-EEEEecc
Confidence 34455554 689999887643211 011223557899999999999999999999864 444544 33322
Q ss_pred ---eccccccCCcEEEEEE
Q psy6919 99 ---SFYTCWKLSYIFLMVI 114 (638)
Q Consensus 99 ---~fYek~~~GF~~~gv~ 114 (638)
+||+| +||+..+..
T Consensus 118 ~a~~FY~k--~GF~~~~~~ 134 (156)
T PRK13688 118 KSKDFWLK--LGFTPVEYK 134 (156)
T ss_pred chHHHHHh--CCCEEeEEe
Confidence 89999 999887765
No 62
>KOG3234|consensus
Probab=98.50 E-value=3.4e-07 Score=86.59 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=81.6
Q ss_pred EEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe--------
Q psy6919 27 VTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF-------- 98 (638)
Q Consensus 27 ~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~-------- 98 (638)
+.++++. +++|.|++.-..+.... .-.+|+..+.|.|+||+.|+|+.||+.+++...+.+..-+.|-+
T Consensus 43 ~~~a~~p-~~~imgyimgk~Eg~~~---~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI 118 (173)
T KOG3234|consen 43 FIVAEAP-TGEIMGYIMGKVEGKDT---EWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAI 118 (173)
T ss_pred hEeccCC-CCceEEEEeeeccccCc---ceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHH
Confidence 4666653 78999998765543322 23688999999999999999999999999999998888887776
Q ss_pred eccccccCCcEEEEEEEeehhheeeeccccc-CCchhHhHHHHHHh
Q psy6919 99 SFYTCWKLSYIFLMVIRSQVLKMVYTAGYLI-GHPEAKTKLLDTAR 143 (638)
Q Consensus 99 ~fYek~~~GF~~~gv~k~~~~~~vyk~aY~~-~~~e~~i~~l~~~~ 143 (638)
.||++ +||..+.++-. ||. |..||+.+|=+-|+
T Consensus 119 ~mYkk--LGY~~YR~Vi~----------YY~~g~deda~dMRKalS 152 (173)
T KOG3234|consen 119 DMYKK--LGYSVYRTVIE----------YYSVGPDEDAYDMRKALS 152 (173)
T ss_pred HHHHh--cCceEEEeeee----------eeccCCCcchHhhhhhhc
Confidence 79999 99988766544 665 89999999988666
No 63
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.43 E-value=1e-06 Score=67.78 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=50.6
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEE
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLD 97 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~ 97 (638)
+++++|++.+..... ....+++..++|+|+|||+|+|+++|+++.+++++.|+.++.++
T Consensus 7 ~~~~ig~~~~~~~~~----~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~ 65 (65)
T cd04301 7 DGEIVGFASLSPDGS----GGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRLE 65 (65)
T ss_pred CCEEEEEEEEEecCC----CCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEeC
Confidence 589999988765321 24578899999999999999999999999999999999998763
No 64
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.36 E-value=1.3e-06 Score=91.18 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=54.7
Q ss_pred EEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe--------
Q psy6919 27 VTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF-------- 98 (638)
Q Consensus 27 ~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~-------- 98 (638)
.+++.+ ++++||++.+.... ....+|..++|+|+|||+|||++||+++++.+. ..+.+.+
T Consensus 48 ~~~~~~--~~~~vG~~~~~~~~------~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~ 115 (292)
T TIGR03448 48 HLVAVD--SDPIVGYANLVPAR------GTDPAMAELVVHPAHRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAAR 115 (292)
T ss_pred EEEEEE--CCEEEEEEEEEcCC------CCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHH
Confidence 456654 68999998875421 123578899999999999999999999999875 3344443
Q ss_pred eccccccCCcEEEE
Q psy6919 99 SFYTCWKLSYIFLM 112 (638)
Q Consensus 99 ~fYek~~~GF~~~g 112 (638)
.||++ +||....
T Consensus 116 ~fy~~--~Gf~~~~ 127 (292)
T TIGR03448 116 ALASR--LGLVPTR 127 (292)
T ss_pred HHHHH--CCCEEcc
Confidence 89999 9996643
No 65
>PRK10562 putative acetyltransferase; Provisional
Probab=98.31 E-value=3.8e-06 Score=78.54 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=52.7
Q ss_pred EEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-------
Q psy6919 26 LVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF------- 98 (638)
Q Consensus 26 ~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~------- 98 (638)
..+++.+ ++++||++.+.. ...|..++|+|+|||+|+|++||+++++.+ ..+.+.+
T Consensus 49 ~~~v~~~--~~~~iG~~~~~~----------~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~-----~~~~~~v~~~N~~s 111 (145)
T PRK10562 49 QTWVWEE--DGKLLGFVSVLE----------GRFVGALFVAPKAVRRGIGKALMQHVQQRY-----PHLSLEVYQKNQRA 111 (145)
T ss_pred cEEEEEE--CCEEEEEEEEee----------ccEEEEEEECHHHcCCCHHHHHHHHHHhhC-----CeEEEEEEcCChHH
Confidence 3455554 589999987642 124778999999999999999999998853 4455554
Q ss_pred -eccccccCCcEEEEE
Q psy6919 99 -SFYTCWKLSYIFLMV 113 (638)
Q Consensus 99 -~fYek~~~GF~~~gv 113 (638)
+||+| +||+..+.
T Consensus 112 ~~~y~k--~Gf~~~~~ 125 (145)
T PRK10562 112 VNFYHA--QGFRIVDS 125 (145)
T ss_pred HHHHHH--CCCEEccc
Confidence 79999 99988664
No 66
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=98.30 E-value=6.4e-06 Score=75.64 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=70.7
Q ss_pred CHHHHHHHHHH-Hhc--CCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHH
Q psy6919 8 NVFHFAERFHR-MKA--SQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVK 84 (638)
Q Consensus 8 s~e~~~~~f~~-~~~--~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e 84 (638)
+.+...++++. ... ...+.++++.+..++++||++.+..... ....++|. +.|.|+|||+|+|+.++..+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~----~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~ 110 (142)
T PF13302_consen 36 TLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDK----NNNWAEIG-YWIGPDYRGKGYGTEALKLLLD 110 (142)
T ss_dssp SHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEET----TTTEEEEE-EEEEGGGTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeeccc----CCCccccc-cchhHHHHhhhHHHHHHHHHHH
Confidence 77777777763 221 1125667776655568999988843221 33455555 8999999999999999999999
Q ss_pred HH-HHcCCeEEEEEe--------eccccccCCcE
Q psy6919 85 LA-KHFQCYKLTLDF--------SFYTCWKLSYI 109 (638)
Q Consensus 85 ~A-r~~G~~~I~L~~--------~fYek~~~GF~ 109 (638)
++ ++.|+.++...+ ++++| +||+
T Consensus 111 ~~~~~~~~~~i~a~~~~~N~~s~~~~~k--~GF~ 142 (142)
T PF13302_consen 111 WAFEELGLHRIIATVMADNEASRRLLEK--LGFE 142 (142)
T ss_dssp HHHHTSTSSEEEEEEETT-HHHHHHHHH--TT-E
T ss_pred HHHhcCCcEEEEEEECcCCHHHHHHHHH--cCCC
Confidence 99 688999998887 79999 9995
No 67
>KOG3235|consensus
Probab=98.29 E-value=3.6e-06 Score=79.75 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=78.6
Q ss_pred EEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHH-cCCeEEEEEe------
Q psy6919 26 LVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKH-FQCYKLTLDF------ 98 (638)
Q Consensus 26 ~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~-~G~~~I~L~~------ 98 (638)
..|||+|+ +|+|||+.....+.+. ....+.++|..++|...||+.|||++||+.+.+--.+ .+++.+.|.+
T Consensus 42 lSyVA~D~-~gkiVGYvlAkmee~p-~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNra 119 (193)
T KOG3235|consen 42 LSYVAEDE-NGKIVGYVLAKMEEDP-DDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRA 119 (193)
T ss_pred ceEEEEcC-CCcEEEEeeeehhhcc-cCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHH
Confidence 46899864 8999999766544321 1244589999999999999999999999986554333 5677888887
Q ss_pred --eccc-cccCCcEEEEEEEeehhheeeecccccCCchhHhHHHHHHhhh
Q psy6919 99 --SFYT-CWKLSYIFLMVIRSQVLKMVYTAGYLIGHPEAKTKLLDTARKL 145 (638)
Q Consensus 99 --~fYe-k~~~GF~~~gv~k~~~~~~vyk~aY~~~~~e~~i~~l~~~~~~ 145 (638)
.+|+ . +||....+-.. ||.+ -||+-.|-+.|+.+
T Consensus 120 Al~LY~~t--l~F~v~eve~k----------YYad-GedAyaM~~~L~~~ 156 (193)
T KOG3235|consen 120 ALHLYKNT--LGFVVCEVEPK----------YYAD-GEDAYAMRKDLSVC 156 (193)
T ss_pred HHHhhhhc--cceEEeecccc----------cccc-cHHHHHHHHHHHHH
Confidence 7998 7 99988776544 7643 46788888777643
No 68
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.22 E-value=3.4e-06 Score=79.09 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=63.8
Q ss_pred CEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcC-CeEEEEEe----
Q psy6919 24 DYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQ-CYKLTLDF---- 98 (638)
Q Consensus 24 ~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G-~~~I~L~~---- 98 (638)
..++++.. .+|+++|++++..... ......|.+|+|+|++||+|+|++||..+++.|.+.. -..+.|..
T Consensus 49 ~~Hl~~~~--~~g~LvAyaRLl~~~~----~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahL 122 (155)
T COG2153 49 TRHLLGWT--PDGELVAYARLLPPGA----EYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHL 122 (155)
T ss_pred cceEEEEc--CCCeEEEEEecCCCCC----CcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHH
Confidence 34556653 3799999999864321 2223669999999999999999999999999999876 45578876
Q ss_pred -eccccccCCcEEEE
Q psy6919 99 -SFYTCWKLSYIFLM 112 (638)
Q Consensus 99 -~fYek~~~GF~~~g 112 (638)
.||.. +||...+
T Consensus 123 q~fYa~--~GFv~~~ 135 (155)
T COG2153 123 QDFYAS--FGFVRVG 135 (155)
T ss_pred HHHHHH--hCcEEcC
Confidence 89999 9997755
No 69
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.16 E-value=5.3e-06 Score=93.94 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=63.5
Q ss_pred EEEECCCCeEEEEEEEEEeecccc--ccccceeeeEEEEC-----------CCCcCCcHHHHHHHHHHHHHHHcCCeEEE
Q psy6919 29 VIEDTRTKQVIGTGSLILEQKFIH--ECALKGKIEEVVVD-----------DTYRGKELGKLLIAVLVKLAKHFQCYKLT 95 (638)
Q Consensus 29 Vaede~~gkIVG~~~l~~~~~~~~--~~~~~~~I~~l~V~-----------p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~ 95 (638)
..++..++.++|+..+.......+ .....++|..+.|. |+|||+|+|++||++++++|++.|+..+.
T Consensus 416 ~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~ 495 (522)
T TIGR01211 416 SYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKIL 495 (522)
T ss_pred EEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEE
Confidence 344344578999998875432111 12336677777744 99999999999999999999999999999
Q ss_pred EEe-----eccccccCCcEEEEE
Q psy6919 96 LDF-----SFYTCWKLSYIFLMV 113 (638)
Q Consensus 96 L~~-----~fYek~~~GF~~~gv 113 (638)
|.+ .||++ +||...+.
T Consensus 496 v~s~~~A~~FY~k--lGf~~~g~ 516 (522)
T TIGR01211 496 VISGIGVREYYRK--LGYELDGP 516 (522)
T ss_pred EeeCchHHHHHHH--CCCEEEcc
Confidence 875 89999 99987554
No 70
>KOG2488|consensus
Probab=98.16 E-value=6.1e-06 Score=80.54 Aligned_cols=71 Identities=28% Similarity=0.404 Sum_probs=61.5
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe--------eccccccC
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF--------SFYTCWKL 106 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~--------~fYek~~~ 106 (638)
.+++|||....+..+ .+.++.++-.|-|.++|||+|||+.||+.++..|......+|.|+| +||.+ +
T Consensus 101 ~~~~vgf~~Frf~vd---~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~--~ 175 (202)
T KOG2488|consen 101 KSKLVGFTMFRFTVD---TGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHR--L 175 (202)
T ss_pred CCceeeEEEEEEEcc---cCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHH--c
Confidence 448999988766443 2457888999999999999999999999999999999999999998 89999 9
Q ss_pred CcEE
Q psy6919 107 SYIF 110 (638)
Q Consensus 107 GF~~ 110 (638)
||..
T Consensus 176 gf~~ 179 (202)
T KOG2488|consen 176 GFVV 179 (202)
T ss_pred Cccc
Confidence 9954
No 71
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.04 E-value=3.4e-05 Score=66.74 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=44.4
Q ss_pred ceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe--------eccccccCCcEEEEE
Q psy6919 57 KGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF--------SFYTCWKLSYIFLMV 113 (638)
Q Consensus 57 ~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~--------~fYek~~~GF~~~gv 113 (638)
.+.|..|+|+|+|||||+|+.|+.++.+.+.+.|..- .+.+ +||+| +||+....
T Consensus 21 ~g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~-~l~v~~~N~~s~~ly~k--lGf~~~~~ 82 (86)
T PF08445_consen 21 DGEIGGVYTLPEHRRRGLGSALVAALARELLERGKTP-FLYVDADNEASIRLYEK--LGFREIEE 82 (86)
T ss_dssp TCCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEE-EEEEETT-HHHHHHHHH--CT-EEEEE
T ss_pred CcEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcE-EEEEECCCHHHHHHHHH--cCCEEEEE
Confidence 3789999999999999999999999999999998764 4443 89999 99987543
No 72
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.02 E-value=2.2e-05 Score=78.05 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHhcCCCEEEEEEEECCCC--eEEEEEEEEEeeccccc-------------------------------c
Q psy6919 8 NVFHFAERFHRMKASQDYLVTVIEDTRTK--QVIGTGSLILEQKFIHE-------------------------------C 54 (638)
Q Consensus 8 s~e~~~~~f~~~~~~~~~~~~Vaede~~g--kIVG~~~l~~~~~~~~~-------------------------------~ 54 (638)
++.+++ .+.+.|++.++++.. ++ +|+|++.+..+..+... .
T Consensus 14 sPnDL~----~LlDaP~h~l~~l~~--~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~ 87 (196)
T PF13718_consen 14 SPNDLQ----LLLDAPNHRLFVLLQ--PGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQ 87 (196)
T ss_dssp -HHHHH----HHHH-TTEEEEEEE---SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGG
T ss_pred CHHHHH----HHhcCCcceeehhcc--CCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHh
Confidence 455554 444568899999875 46 99999888765432110 0
Q ss_pred ccceeeeEEEECCCCcCCcHHHHHHHHHHHHH-------------------------HHcCCeEEEEEe-------eccc
Q psy6919 55 ALKGKIEEVVVDDTYRGKELGKLLIAVLVKLA-------------------------KHFQCYKLTLDF-------SFYT 102 (638)
Q Consensus 55 ~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~A-------------------------r~~G~~~I~L~~-------~fYe 102 (638)
-...+|.+|+|+|++|++|+|++|++.+++++ +..++.-+-... +|+.
T Consensus 88 l~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~ 167 (196)
T PF13718_consen 88 LSGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ 167 (196)
T ss_dssp SEEEEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHH
T ss_pred hcceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH
Confidence 13466999999999999999999999999999 466777765553 8999
Q ss_pred cccCCcEEEE
Q psy6919 103 CWKLSYIFLM 112 (638)
Q Consensus 103 k~~~GF~~~g 112 (638)
| +||....
T Consensus 168 k--~gf~pv~ 175 (196)
T PF13718_consen 168 K--NGFVPVY 175 (196)
T ss_dssp C--TT-EEEE
T ss_pred H--CCcEEEE
Confidence 9 9996633
No 73
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=97.92 E-value=4.3e-05 Score=65.12 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=46.4
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEeec
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDFSF 100 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~~f 100 (638)
+|+.+|++.+.. .+....|.+..|.|++||||+|++||+++.++|+++|. +|...|+|
T Consensus 7 ~g~~~a~l~Y~~-------~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~-kv~p~C~y 64 (78)
T PF14542_consen 7 DGEEIAELTYRE-------DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGL-KVVPTCSY 64 (78)
T ss_dssp STTEEEEEEEEE-------SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT--EEEETSHH
T ss_pred CCEEEEEEEEEe-------CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCC-EEEEECHH
Confidence 578899887643 44577799999999999999999999999999999995 55565643
No 74
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.88 E-value=6.1e-05 Score=77.38 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=61.5
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEE-e------eccccccCC
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLD-F------SFYTCWKLS 107 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~-~------~fYek~~~G 107 (638)
+|+||+.+... ..+...+.|..++++|+|||||+|..|+.++-+-.-..|+...-.. + +.|++ +|
T Consensus 185 d~~iVa~A~t~------a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r--iG 256 (268)
T COG3393 185 DGKIVAKAETA------AENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR--IG 256 (268)
T ss_pred CCcEEEeeecc------ccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH--hC
Confidence 57999998753 2355678999999999999999999999999999999998765443 2 89999 99
Q ss_pred cEEEEEEEe
Q psy6919 108 YIFLMVIRS 116 (638)
Q Consensus 108 F~~~gv~k~ 116 (638)
|+..|..+.
T Consensus 257 F~~~g~~~~ 265 (268)
T COG3393 257 FREIGEFRE 265 (268)
T ss_pred CeecceEEE
Confidence 999886543
No 75
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00018 Score=68.33 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=59.5
Q ss_pred CeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHH-cCCeEEEEEe--------eccccccC
Q psy6919 36 KQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKH-FQCYKLTLDF--------SFYTCWKL 106 (638)
Q Consensus 36 gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~-~G~~~I~L~~--------~fYek~~~ 106 (638)
+++||.+.+..... ......++ -...++|+|+|||+|+..+..+.++|-+ .++.++.+.+ +.++| +
T Consensus 77 ~~~iG~~~~~~~~~--~~~~~~~~-ig~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek--~ 151 (187)
T COG1670 77 GELIGVIGLSDIDR--AANGDLAE-IGYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEK--L 151 (187)
T ss_pred CeEEEEEEEEEecc--ccccceEE-EEEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHH--c
Confidence 58999998875432 01122232 2455699999999999999999999977 8999999987 89999 9
Q ss_pred CcEEEEEEEe
Q psy6919 107 SYIFLMVIRS 116 (638)
Q Consensus 107 GF~~~gv~k~ 116 (638)
||+..|..+.
T Consensus 152 Gf~~eg~~~~ 161 (187)
T COG1670 152 GFRLEGELRQ 161 (187)
T ss_pred CChhhhhhhh
Confidence 9999887665
No 76
>KOG3138|consensus
Probab=97.68 E-value=4.8e-05 Score=75.08 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=63.8
Q ss_pred ceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcC-CeEEEEEe--------eccccccCCcEEEEEEEeehhheeeeccc
Q psy6919 57 KGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQ-CYKLTLDF--------SFYTCWKLSYIFLMVIRSQVLKMVYTAGY 127 (638)
Q Consensus 57 ~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G-~~~I~L~~--------~fYek~~~GF~~~gv~k~~~~~~vyk~aY 127 (638)
.++|..+.|.|.||.+|||++|++++.+++.+.. |..+.|.+ .||++ .||+....... |
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~--~gF~~~~~~~~----------~ 156 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEK--RGFEIVERLKN----------Y 156 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHh--cCceEeecccc----------c
Confidence 4889999999999999999999999999999988 89899886 89999 99988665444 7
Q ss_pred ccCC-chhHhHHHHHHhhh
Q psy6919 128 LIGH-PEAKTKLLDTARKL 145 (638)
Q Consensus 128 ~~~~-~e~~i~~l~~~~~~ 145 (638)
|... ..+...|.+.+...
T Consensus 157 y~~~~~~~~~~l~~~~~~~ 175 (187)
T KOG3138|consen 157 YSILGPPDDSFLRKLLIHG 175 (187)
T ss_pred cccccCcchhhhhhheecC
Confidence 7544 56667777666533
No 77
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=97.40 E-value=0.00038 Score=61.99 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=52.2
Q ss_pred EEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEeeccc
Q psy6919 26 LVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDFSFYT 102 (638)
Q Consensus 26 ~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~~fYe 102 (638)
..+++.+ +|+.+|.+..... +.....|.+-+|.+++||||+|++|++++++.||+.|.+-+-+ |+|+.
T Consensus 16 ~~y~~~~--~G~~~~e~~y~~~------~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~-Csf~~ 83 (99)
T COG2388 16 GRYVLTD--EGEVIGEATYYDR------GENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPL-CSFAV 83 (99)
T ss_pred eEEEEec--CCcEEEEEEEecC------CCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEccc-chHHH
Confidence 3455543 6888998766432 3356778999999999999999999999999999999866655 34443
No 78
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.25 E-value=0.0013 Score=76.99 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=65.3
Q ss_pred HhcCCCEEEEEEEECCCCeEEEEEEEEEeeccc-----------cc-------------------cccceeeeEEEECCC
Q psy6919 19 MKASQDYLVTVIEDTRTKQVIGTGSLILEQKFI-----------HE-------------------CALKGKIEEVVVDDT 68 (638)
Q Consensus 19 ~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~-----------~~-------------------~~~~~~I~~l~V~p~ 68 (638)
|.+.|++.++++.-+ ++++|+.+.+..+.... .. .-.-.+|.+|+|||+
T Consensus 464 L~DaP~h~~~al~~~-~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRIAvhPe 542 (758)
T COG1444 464 LLDAPHHHIFALRAP-EGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRIAVHPE 542 (758)
T ss_pred HhcCCCCeeEEEEcC-CCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEEEEeCHH
Confidence 445577888887642 45788777664432220 00 002345999999999
Q ss_pred CcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-------eccccccCCcEEEEEE
Q psy6919 69 YRGKELGKLLIAVLVKLAKHFQCYKLTLDF-------SFYTCWKLSYIFLMVI 114 (638)
Q Consensus 69 yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~-------~fYek~~~GF~~~gv~ 114 (638)
+|++|||++|++.++++|+ .||.-+.... +|+.| +||...+..
T Consensus 543 ~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r--nGF~pVhls 592 (758)
T COG1444 543 LQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR--NGFVPVHLS 592 (758)
T ss_pred HHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH--cCeEEEEec
Confidence 9999999999999999998 5777776653 89999 999665543
No 79
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.21 E-value=0.00014 Score=60.31 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=37.3
Q ss_pred EEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEeeccccccCCc
Q psy6919 63 VVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDFSFYTCWKLSY 108 (638)
Q Consensus 63 l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~~fYek~~~GF 108 (638)
++|+|+|||+|||++|+++++++|+..|+........+|++ .||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~~~~~~~~~~~~--~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGISLNRLALEVYEK--NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCceehHHHHHHHHh--cCC
Confidence 99999999999999999999999999998722222378888 777
No 80
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=97.15 E-value=0.0021 Score=62.25 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCC-------C---EEEEEEEECCCCeEEEEEEEEEee--ccccccccceeeeEEEECCCCcCCcHHHH
Q psy6919 10 FHFAERFHRMKASQ-------D---YLVTVIEDTRTKQVIGTGSLILEQ--KFIHECALKGKIEEVVVDDTYRGKELGKL 77 (638)
Q Consensus 10 e~~~~~f~~~~~~~-------~---~~~~Vaede~~gkIVG~~~l~~~~--~~~~~~~~~~~I~~l~V~p~yRGkGIGk~ 77 (638)
+.|...++.+...+ + ...+.+.++ ++++||++.+.-.- .+....+ ||. =.|.|+.||||+|++
T Consensus 43 ~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~-d~~ivG~i~lRh~Ln~~ll~~gG---HIG-Y~VrPseR~KGYA~e 117 (174)
T COG3981 43 EDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDE-DGQIVGFINLRHQLNDFLLEEGG---HIG-YSVRPSERRKGYAKE 117 (174)
T ss_pred ccHHHHHHHHhccCCCcCCCCCceeceeEEEEec-CCcEEEEEEeeeecchHHHhcCC---ccc-ceeChhhhccCHHHH
Confidence 55666666643321 1 223444444 79999998764321 1111223 332 479999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEe
Q psy6919 78 LIAVLVKLAKHFQCYKLTLDF 98 (638)
Q Consensus 78 Lm~~l~e~Ar~~G~~~I~L~~ 98 (638)
+++.+++.|++.|++++.++|
T Consensus 118 mLkl~L~~ar~lgi~~Vlvtc 138 (174)
T COG3981 118 MLKLALEKARELGIKKVLVTC 138 (174)
T ss_pred HHHHHHHHHHHcCCCeEEEEe
Confidence 999999999999999999998
No 81
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.10 E-value=0.0028 Score=58.81 Aligned_cols=74 Identities=9% Similarity=0.170 Sum_probs=54.2
Q ss_pred CEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-----
Q psy6919 24 DYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----- 98 (638)
Q Consensus 24 ~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----- 98 (638)
.+.+|+|.= |++++|.+.+.. .+..+.+.+++|.|-=|++|+|+.|++.+.+.+ -++....+..
T Consensus 37 ~~~l~aArF--NdRlLgAv~v~~-------~~~~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~ 105 (128)
T PF12568_consen 37 GHRLFAARF--NDRLLGAVKVTI-------SGQQAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEP 105 (128)
T ss_dssp SEEEEEEEE--TTEEEEEEEEEE-------ETTEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S-
T ss_pred CCeEEEEEe--chheeeeEEEEE-------cCcceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcc
Confidence 567888864 899999887754 345788999999999999999999999999888 3455655543
Q ss_pred -------eccccccCCcEE
Q psy6919 99 -------SFYTCWKLSYIF 110 (638)
Q Consensus 99 -------~fYek~~~GF~~ 110 (638)
.|-.. |||..
T Consensus 106 ~~~~~~~~Fm~a--~GF~~ 122 (128)
T PF12568_consen 106 QDRAVMAAFMQA--CGFSA 122 (128)
T ss_dssp -THHHHHHHHHH--HT-EE
T ss_pred cchHHHHHHHHH--cCccc
Confidence 68888 99954
No 82
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.80 E-value=0.018 Score=52.56 Aligned_cols=84 Identities=13% Similarity=-0.020 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHH
Q psy6919 6 TSNVFHFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKL 85 (638)
Q Consensus 6 ~~s~e~~~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~ 85 (638)
+.+.+-+++.++.+...+...++++.. +|++||+..... .+...+..-..++|+|+..++|..|+..++++
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~l~~~~~--~g~~va~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~ 122 (142)
T PF13480_consen 52 PFSRDFFRDLLRSLAESGRLRLFVLYD--GGEPVAFALGFR-------HGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRW 122 (142)
T ss_pred cchHHHHHHHHHhhccCCCEEEEEEEE--CCEEEEEEEEEE-------ECCEEEEEEEEECHhhHhCCHHHHHHHHHHHH
Confidence 344555555566554455667777765 699999875543 23355566788899999999999999999999
Q ss_pred HHHcCCeEEEEEe
Q psy6919 86 AKHFQCYKLTLDF 98 (638)
Q Consensus 86 Ar~~G~~~I~L~~ 98 (638)
|.++|+..+.+..
T Consensus 123 a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 123 AIERGLRYFDFGG 135 (142)
T ss_pred HHHCCCCEEEECC
Confidence 9999999888764
No 83
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.75 E-value=0.0063 Score=63.45 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=60.4
Q ss_pred CEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-----
Q psy6919 24 DYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----- 98 (638)
Q Consensus 24 ~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----- 98 (638)
++++.+.. .+++||+++++.- -.|..|+|+|.+||-|+.-+|+.+++++|-++|+..+.+-+
T Consensus 36 e~~v~~~~--~~~~iiacGsiaG-----------nvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~ 102 (352)
T COG3053 36 EYFVAIYR--DNEEIIACGSIAG-----------NVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYA 102 (352)
T ss_pred eEEEEEEc--CCCcEEEeccccc-----------ceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHH
Confidence 35544443 3689999987631 13678999999999999999999999999999999999988
Q ss_pred eccccccCCcEEE
Q psy6919 99 SFYTCWKLSYIFL 111 (638)
Q Consensus 99 ~fYek~~~GF~~~ 111 (638)
.|++. |||...
T Consensus 103 ~lFk~--~GF~~i 113 (352)
T COG3053 103 ALFKQ--CGFSEI 113 (352)
T ss_pred HHHHh--CCceEe
Confidence 79999 999653
No 84
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=96.56 E-value=0.0044 Score=66.15 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccc---cccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHc
Q psy6919 13 AERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHE---CALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHF 89 (638)
Q Consensus 13 ~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~---~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~ 89 (638)
.+.|..+.+.++++ |..+ +.++++...... -..++ .-+.+.|..|+++|+|||+|.-++||.+..+.-+++
T Consensus 29 ~~~f~kil~~~n~~--vi~~--nqkl~s~L~i~~--f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~k 102 (389)
T COG4552 29 GAVFVKILAEPNSY--VIYM--NQKLASRLHIPP--FIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARK 102 (389)
T ss_pred hhhhhhhccCCcce--EEee--hhhhhhcccccc--hheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHc
Confidence 44556666666654 4432 567776543321 11122 225667999999999999999999999999999999
Q ss_pred CCeEEEEEe---eccccccCCcEEEEE
Q psy6919 90 QCYKLTLDF---SFYTCWKLSYIFLMV 113 (638)
Q Consensus 90 G~~~I~L~~---~fYek~~~GF~~~gv 113 (638)
|..-..|.- +||+| +||..+..
T Consensus 103 G~p~s~L~P~s~~iYrK--fGye~asn 127 (389)
T COG4552 103 GYPVSALHPFSGGIYRK--FGYEYASN 127 (389)
T ss_pred CCeeEEeccCchhhHhh--ccccccce
Confidence 999988885 99999 99976543
No 85
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.38 E-value=0.024 Score=59.28 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=49.1
Q ss_pred CCeEEEEEEEEEeeccccccccceeee-EEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe------eccccccCC
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIE-EVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF------SFYTCWKLS 107 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~-~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~------~fYek~~~G 107 (638)
+|+||+.|.-..... . .++ +|.++|+|||||+|+.+-.+++..|.++|..- ..++ ++=+| +|
T Consensus 173 ~~~iVs~~~s~~~~~----~----~~EI~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P-~WDc~N~~S~~lA~k--LG 241 (265)
T PF12746_consen 173 DGEIVSGCSSYFVYE----N----GIEIDIETHPEYRGKGLATAVAAAFILECLENGLYP-SWDCHNLASIALAEK--LG 241 (265)
T ss_dssp TTEEEEEEEEEEEET----T----EEEEEEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EE-E-EESSHHHHHHHHH--CT
T ss_pred CCEEEEEEEEEEEEC----C----EEEEEEEECHHhhcCCHHHHHHHHHHHHHHHCCCCc-CeeCCCHHHHHHHHH--cC
Confidence 688887664433221 1 122 69999999999999999999999999999765 4555 67778 99
Q ss_pred cEEEEEEEeehhheeeecccccCCchh
Q psy6919 108 YIFLMVIRSQVLKMVYTAGYLIGHPEA 134 (638)
Q Consensus 108 F~~~gv~k~~~~~~vyk~aY~~~~~e~ 134 (638)
|+.... ..+|++.+...
T Consensus 242 f~~~~~----------Y~~Y~v~~~~~ 258 (265)
T PF12746_consen 242 FHFDFE----------YTAYEVNNSSN 258 (265)
T ss_dssp --EEEE----------EEEE-------
T ss_pred Ccccce----------eeeeeeccccc
Confidence 987443 34477665543
No 86
>KOG4144|consensus
Probab=95.73 E-value=0.007 Score=57.65 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=45.6
Q ss_pred cccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHc-CCeEEEEEe-----eccccccCCcEEEEE
Q psy6919 54 CALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHF-QCYKLTLDF-----SFYTCWKLSYIFLMV 113 (638)
Q Consensus 54 ~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~-G~~~I~L~~-----~fYek~~~GF~~~gv 113 (638)
.+....|..++|+|+||.||.|..|+..-++..-++ =..++.|-+ .||++ +||+..|-
T Consensus 98 ~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr--~gFk~vgp 161 (190)
T KOG4144|consen 98 GGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER--FGFKAVGP 161 (190)
T ss_pred CCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh--cCceeecc
Confidence 345678999999999999999999998866655443 334566665 99999 99988664
No 87
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=95.50 E-value=0.029 Score=52.17 Aligned_cols=56 Identities=23% Similarity=0.194 Sum_probs=50.4
Q ss_pred cceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe----------eccccccCCcEEEEE
Q psy6919 56 LKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----------SFYTCWKLSYIFLMV 113 (638)
Q Consensus 56 ~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----------~fYek~~~GF~~~gv 113 (638)
...+|++|+|....||+|+|++|.+.+.++|+..|...++.++ .|... +||...|.
T Consensus 83 ~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaa--lGF~eVG~ 148 (167)
T COG3818 83 NFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAA--LGFHEVGQ 148 (167)
T ss_pred ceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhh--cCceEccc
Confidence 4678999999999999999999999999999999999998887 58778 99977553
No 88
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=95.19 E-value=0.13 Score=50.75 Aligned_cols=86 Identities=19% Similarity=0.067 Sum_probs=54.8
Q ss_pred EEEEEEEECCCCeEEEEEEEEEeeccccc-cccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-----
Q psy6919 25 YLVTVIEDTRTKQVIGTGSLILEQKFIHE-CALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF----- 98 (638)
Q Consensus 25 ~~~~Vaede~~gkIVG~~~l~~~~~~~~~-~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~----- 98 (638)
|.++++......++|+...+....++... .++..++.-.+++|+|||+|+++.+-+.+.+..+. ++.-..+..
T Consensus 45 Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~-~~~N~~~~~~~~~~ 123 (181)
T PF06852_consen 45 YWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDS-VDDNSVAQGNVKMS 123 (181)
T ss_pred eEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhcc-CCCceeeecCHHHH
Confidence 65555544456789999887765544322 45677888999999999999996444443344333 333333332
Q ss_pred eccccccCCcEEEE
Q psy6919 99 SFYTCWKLSYIFLM 112 (638)
Q Consensus 99 ~fYek~~~GF~~~g 112 (638)
+||.+ -+||...+
T Consensus 124 ~~w~k-~~G~~~~~ 136 (181)
T PF06852_consen 124 NFWHK-MFGFDDYG 136 (181)
T ss_pred HHHHH-HhCCCCCc
Confidence 78887 45875533
No 89
>KOG4135|consensus
Probab=95.10 E-value=0.13 Score=48.84 Aligned_cols=71 Identities=15% Similarity=0.300 Sum_probs=51.3
Q ss_pred EEEEEEEEEeecccc----ccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHc-CCeEEEEEe--------eccccc
Q psy6919 38 VIGTGSLILEQKFIH----ECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHF-QCYKLTLDF--------SFYTCW 104 (638)
Q Consensus 38 IVG~~~l~~~~~~~~----~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~-G~~~I~L~~--------~fYek~ 104 (638)
.||-..+.+...... ..-..++++-+.-.|..||||+|+..+..++.||... +..+....+ +||+|
T Consensus 84 MvGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk- 162 (185)
T KOG4135|consen 84 MVGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKK- 162 (185)
T ss_pred hccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHH-
Confidence 577666665433221 1234678888999999999999999999999999764 444444433 79999
Q ss_pred cCCcEE
Q psy6919 105 KLSYIF 110 (638)
Q Consensus 105 ~~GF~~ 110 (638)
++|..
T Consensus 163 -~~f~q 167 (185)
T KOG4135|consen 163 -FLFTQ 167 (185)
T ss_pred -hhhee
Confidence 99965
No 90
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=93.66 E-value=0.06 Score=45.03 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.2
Q ss_pred eeEEEECCCCcCCcHHHHHHHHHHHH
Q psy6919 60 IEEVVVDDTYRGKELGKLLIAVLVKL 85 (638)
Q Consensus 60 I~~l~V~p~yRGkGIGk~Lm~~l~e~ 85 (638)
|..|.|+|.+|++||+++||+.+.+.
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 77899999999999999999986654
No 91
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=93.57 E-value=0.05 Score=60.22 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=40.3
Q ss_pred CCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-----eccccccCCcEEEE
Q psy6919 66 DDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF-----SFYTCWKLSYIFLM 112 (638)
Q Consensus 66 ~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~-----~fYek~~~GF~~~g 112 (638)
...||.+|+|++||+.++++|++.+..+|.+-+ .+|+| +||...|
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k--~GY~~~g 508 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRK--LGYELDG 508 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHH--hCccccC
Confidence 578999999999999999999999999987776 79999 9997644
No 92
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=92.97 E-value=0.42 Score=48.25 Aligned_cols=79 Identities=9% Similarity=0.075 Sum_probs=56.1
Q ss_pred EEEEECCCCeEEEEEEEEEeec----------cc-----cccccceeeeEEEECCCCc---CCc----HHHHHHHHHHHH
Q psy6919 28 TVIEDTRTKQVIGTGSLILEQK----------FI-----HECALKGKIEEVVVDDTYR---GKE----LGKLLIAVLVKL 85 (638)
Q Consensus 28 ~Vaede~~gkIVG~~~l~~~~~----------~~-----~~~~~~~~I~~l~V~p~yR---GkG----IGk~Lm~~l~e~ 85 (638)
+++.+ .+|+++|++.+..... +. .......++.+++|+|+++ +.+ +...|+..+.++
T Consensus 56 ll~~~-~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~ 134 (207)
T PRK13834 56 ILAIS-DSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEW 134 (207)
T ss_pred EEEEe-CCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHH
Confidence 44443 3789999998864311 11 1123577889999999863 222 667899999999
Q ss_pred HHHcCCeEEEEEe-----eccccccCCcE
Q psy6919 86 AKHFQCYKLTLDF-----SFYTCWKLSYI 109 (638)
Q Consensus 86 Ar~~G~~~I~L~~-----~fYek~~~GF~ 109 (638)
|.++|+..+...+ +.+.+ +||.
T Consensus 135 a~~~Gi~~~~~v~~~~~~r~l~r--~G~~ 161 (207)
T PRK13834 135 SMANGYTEIVTATDLRFERILAR--AGWP 161 (207)
T ss_pred HHHCCCCEEEEEECHHHHHHHHH--cCCC
Confidence 9999999987654 67788 7873
No 93
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=92.70 E-value=0.62 Score=42.90 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=38.7
Q ss_pred CEEEEEEEECC---CCeEEEEEEEEEeecccc-cc------ccceeeeEEEECCCCcCCcHHHHHHHHHHHH
Q psy6919 24 DYLVTVIEDTR---TKQVIGTGSLILEQKFIH-EC------ALKGKIEEVVVDDTYRGKELGKLLIAVLVKL 85 (638)
Q Consensus 24 ~~~~~Vaede~---~gkIVG~~~l~~~~~~~~-~~------~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~ 85 (638)
++.+++..|.+ .|.++|+.-+-...-+.. .. .+..-|-+.+|+++.|++|+|++|.+++.+.
T Consensus 3 ~~~~Yll~d~~~~~~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~ 74 (120)
T PF05301_consen 3 DQVLYLLKDSEAGGKGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQE 74 (120)
T ss_pred ceEEEEEEecCCCCCceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHH
Confidence 44555554432 357888865432111110 11 1222366899999999999999999998765
No 94
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=92.49 E-value=0.28 Score=50.62 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=54.7
Q ss_pred CCeEEEEEEEEEee-----------cccc-------------ccccceeeeEEEECCCCcCC--------c---------
Q psy6919 35 TKQVIGTGSLILEQ-----------KFIH-------------ECALKGKIEEVVVDDTYRGK--------E--------- 73 (638)
Q Consensus 35 ~gkIVG~~~l~~~~-----------~~~~-------------~~~~~~~I~~l~V~p~yRGk--------G--------- 73 (638)
+|++||++.+.... .... ......++.+++|+|+||++ |
T Consensus 65 ~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~ 144 (241)
T TIGR03694 65 TGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAP 144 (241)
T ss_pred CCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccc
Confidence 58999999987531 0000 01357778899999999974 2
Q ss_pred -----------HHHHHHHHHHHHHHHcCCeEEEEEe-----eccccccCCcE
Q psy6919 74 -----------LGKLLIAVLVKLAKHFQCYKLTLDF-----SFYTCWKLSYI 109 (638)
Q Consensus 74 -----------IGk~Lm~~l~e~Ar~~G~~~I~L~~-----~fYek~~~GF~ 109 (638)
+...|+..+.++|.++|+..+...+ +.+++ +|+.
T Consensus 145 ~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~r--~G~~ 194 (241)
T TIGR03694 145 FSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLSR--FGIQ 194 (241)
T ss_pred cchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHH--hCCc
Confidence 4577999999999999999987665 67788 7773
No 95
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=92.01 E-value=1.4 Score=41.23 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=51.4
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEeeccccccCCcEEEEEE
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDFSFYTCWKLSYIFLMVI 114 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~~fYek~~~GF~~~gv~ 114 (638)
+|++||++.+.+.+.-. . -.-.+=||++...++|+..+-.-+++|++.|..-+.| ||-+
T Consensus 47 ~~kLiav~v~D~l~~gl----S---aVY~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YL----------GY~I---- 105 (128)
T PF04377_consen 47 DGKLIAVAVVDILPDGL----S---AVYTFYDPDYSKRSLGTYSILREIELARELGLPYYYL----------GYWI---- 105 (128)
T ss_pred CCeEEEEEEeecccchh----h---heeeeeCCCccccCcHHHHHHHHHHHHHHcCCCEEee----------CeEe----
Confidence 79999998775432211 1 1125569999999999999999999999988776554 4422
Q ss_pred Eeehhheeeeccc
Q psy6919 115 RSQVLKMVYTAGY 127 (638)
Q Consensus 115 k~~~~~~vyk~aY 127 (638)
...++|-||.+|
T Consensus 106 -~~c~kM~YK~~f 117 (128)
T PF04377_consen 106 -HGCPKMNYKARF 117 (128)
T ss_pred -CCCCcccchhcC
Confidence 245678888888
No 96
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=91.99 E-value=0.79 Score=49.65 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=37.7
Q ss_pred CEEEEEEEECCCCeEEEEEEEEEee------------------------------ccccccccceeeeEEEECCCCcCCc
Q psy6919 24 DYLVTVIEDTRTKQVIGTGSLILEQ------------------------------KFIHECALKGKIEEVVVDDTYRGKE 73 (638)
Q Consensus 24 ~~~~~Vaede~~gkIVG~~~l~~~~------------------------------~~~~~~~~~~~I~~l~V~p~yRGkG 73 (638)
..++||.||.+.|+|||++.+...- .+.+.-...-+|..++++|+||+-|
T Consensus 58 ~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~ 137 (342)
T PF04958_consen 58 EGYLFVLEDTETGEVVGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGG 137 (342)
T ss_dssp -EEEEEEEETTT--EEEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSH
T ss_pred cceEEEEEecCCCcEEEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCc
Confidence 4678999987789999998764210 0001111245588999999999999
Q ss_pred HHHHHHHH
Q psy6919 74 LGKLLIAV 81 (638)
Q Consensus 74 IGk~Lm~~ 81 (638)
.|+.|-..
T Consensus 138 ~G~lLSr~ 145 (342)
T PF04958_consen 138 NGRLLSRS 145 (342)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99998554
No 97
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=91.90 E-value=0.8 Score=45.33 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=56.0
Q ss_pred EEEEEEECCCCeEEEEEEEEEee----------cccc-----ccccceeeeEEEECCCCcC------CcHHHHHHHHHHH
Q psy6919 26 LVTVIEDTRTKQVIGTGSLILEQ----------KFIH-----ECALKGKIEEVVVDDTYRG------KELGKLLIAVLVK 84 (638)
Q Consensus 26 ~~~Vaede~~gkIVG~~~l~~~~----------~~~~-----~~~~~~~I~~l~V~p~yRG------kGIGk~Lm~~l~e 84 (638)
.++++.+ +|+|+|++.+.... .+.. ......++.+++|+++.++ .-+...|+..+.+
T Consensus 46 ~ylv~~~--~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e 123 (182)
T PF00765_consen 46 VYLVALD--DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVE 123 (182)
T ss_dssp EEEEEEE--TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHH
T ss_pred eEEEEEE--CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHH
Confidence 3344544 59999999987522 1110 1134577889999998542 2478899999999
Q ss_pred HHHHcCCeEEEEEe-----eccccccCCcEE
Q psy6919 85 LAKHFQCYKLTLDF-----SFYTCWKLSYIF 110 (638)
Q Consensus 85 ~Ar~~G~~~I~L~~-----~fYek~~~GF~~ 110 (638)
+|.++|+..+.--+ +++++ +||..
T Consensus 124 ~a~~~gi~~~v~V~~~~~~r~l~r--~G~~~ 152 (182)
T PF00765_consen 124 FALSNGIRHIVGVVDPAMERILRR--AGWPV 152 (182)
T ss_dssp HHHCTT-SEEEEEEEHHHHHHHHH--CT-EE
T ss_pred HHHHCCCCEEEEEEChHHHHHHHH--cCCce
Confidence 99999999987665 88999 99955
No 98
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=91.46 E-value=0.17 Score=55.74 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=45.0
Q ss_pred ceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEE-----e--------eccccccCCcEE
Q psy6919 57 KGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLD-----F--------SFYTCWKLSYIF 110 (638)
Q Consensus 57 ~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~-----~--------~fYek~~~GF~~ 110 (638)
.+.|.+++|||+||+-|+|..-|..+.+|.+++-...+.-. + .|+++ .||..
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~--~gfky 305 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEK--VGFKY 305 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhh--hceee
Confidence 46699999999999999999999999999999888776433 1 79999 99976
No 99
>PRK10456 arginine succinyltransferase; Provisional
Probab=90.53 E-value=0.84 Score=49.41 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHhc--------CCCEEEEEEEECCCCeEEEEEEEEEee----c--------cc----------------
Q psy6919 8 NVFHFAERFHRMKA--------SQDYLVTVIEDTRTKQVIGTGSLILEQ----K--------FI---------------- 51 (638)
Q Consensus 8 s~e~~~~~f~~~~~--------~~~~~~~Vaede~~gkIVG~~~l~~~~----~--------~~---------------- 51 (638)
+.+.+.++++.-.. .+..++||.||.+.|+|||++.+.... + ..
T Consensus 32 d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~ 111 (344)
T PRK10456 32 NEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLF 111 (344)
T ss_pred CHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEE
Confidence 66666666655421 234668999987789999998764211 0 00
Q ss_pred --cccccceeeeEEEECCCCcCCcHHHHHHH
Q psy6919 52 --HECALKGKIEEVVVDDTYRGKELGKLLIA 80 (638)
Q Consensus 52 --~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~ 80 (638)
+.-...-+|..++++|+||+-|.|+.|-.
T Consensus 112 l~nd~tG~sElctLfl~p~~R~~~~G~LLSr 142 (344)
T PRK10456 112 LSNDHTGSSELCTLFLDPDWRKEGNGYLLSK 142 (344)
T ss_pred eeccCCCCceeEEEEECHHHcCCCchhHHHH
Confidence 01112345889999999999999998843
No 100
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=90.44 E-value=1.5 Score=44.59 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=65.0
Q ss_pred HHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEE
Q psy6919 15 RFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKL 94 (638)
Q Consensus 15 ~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I 94 (638)
.+..+..... .++-|-. .+|++||...-++ .......+.+=.-+.|.|++||.|+|=+|=..=-++|+.+|+..|
T Consensus 37 ~i~al~~~GG-lvlgAf~-~dg~lVGls~G~p---g~r~g~~y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli 111 (266)
T COG3375 37 TIRALRYHGG-LVLGAFS-ADGRLVGLSYGYP---GGRGGSLYLYSHMLGVREEVKGSGLGVALKMKQRERALSMGYTLI 111 (266)
T ss_pred HHHHHHhcCC-eEEEEEc-CCCcEEEEEeccC---CcCCCceeeeeeehhccccccccchhhhhHHHHHHHHHhcCeeeE
Confidence 3444444433 3455543 3679999765433 111222244445589999999999999998888999999999999
Q ss_pred EEEe----eccccccCCcEEEEEEEeehhheeeecccccC
Q psy6919 95 TLDF----SFYTCWKLSYIFLMVIRSQVLKMVYTAGYLIG 130 (638)
Q Consensus 95 ~L~~----~fYek~~~GF~~~gv~k~~~~~~vyk~aY~~~ 130 (638)
..+. .+-.+ +-+...|. ....|.++||-+
T Consensus 112 ~WTfDPl~alNA~--fNi~KLGa-----~artYi~nfYg~ 144 (266)
T COG3375 112 AWTFDPLNALNAR--FNISKLGA-----IARTYIKNFYGE 144 (266)
T ss_pred EEecccchhhhhh--cchhhhce-----eEEEeeccccch
Confidence 8875 22222 22222222 235788888843
No 101
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=90.44 E-value=0.89 Score=49.09 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHhc--------CCCEEEEEEEECCCCeEEEEEEEEEee----c--------cc----------------
Q psy6919 8 NVFHFAERFHRMKA--------SQDYLVTVIEDTRTKQVIGTGSLILEQ----K--------FI---------------- 51 (638)
Q Consensus 8 s~e~~~~~f~~~~~--------~~~~~~~Vaede~~gkIVG~~~l~~~~----~--------~~---------------- 51 (638)
+.+.+.++++.-.+ .+..++||.||.+.|+|||++.+...- + ..
T Consensus 30 d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~ 109 (336)
T TIGR03244 30 NEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLF 109 (336)
T ss_pred CHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEE
Confidence 66667766665421 224678999987789999998764210 0 00
Q ss_pred --cccccceeeeEEEECCCCcCCcHHHHHHH
Q psy6919 52 --HECALKGKIEEVVVDDTYRGKELGKLLIA 80 (638)
Q Consensus 52 --~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~ 80 (638)
+.-...-+|..++++|+||+-|.|+.|-+
T Consensus 110 l~nd~tG~SElctLfL~p~~R~~~~G~LLSr 140 (336)
T TIGR03244 110 LSNDLTGYSELCTLFLDPDYRKGGNGRLLSK 140 (336)
T ss_pred eeccCCCCeeeEEEEECHHHcCCcchhhHHH
Confidence 01112345889999999999999998843
No 102
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=90.35 E-value=0.86 Score=45.31 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=35.9
Q ss_pred eEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCC
Q psy6919 37 QVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQC 91 (638)
Q Consensus 37 kIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~ 91 (638)
.+||+.+=- +. ......+..|.|-|.||+||+|+.|++.--+.++..|.
T Consensus 66 h~vGyFSKE---k~---s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~~ 114 (188)
T PF01853_consen 66 HIVGYFSKE---KE---SWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREGK 114 (188)
T ss_dssp EEEEEEEEE---SS----TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTTS
T ss_pred eeEEEEEEE---ec---ccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccCc
Confidence 578876532 11 11234577899999999999999999999999998763
No 103
>KOG2535|consensus
Probab=89.58 E-value=0.27 Score=52.59 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=37.6
Q ss_pred CCCcCCcHHHHHHHHHHHHHHH-cCCeEEEEEe-----eccccccCCcEEEE
Q psy6919 67 DTYRGKELGKLLIAVLVKLAKH-FQCYKLTLDF-----SFYTCWKLSYIFLM 112 (638)
Q Consensus 67 p~yRGkGIGk~Lm~~l~e~Ar~-~G~~~I~L~~-----~fYek~~~GF~~~g 112 (638)
..||.||+|..||++++++|++ +|..+|.+-+ .+|+| +||...|
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~k--lGY~LdG 546 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRK--LGYELDG 546 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHh--hCeeecC
Confidence 3699999999999999999986 6878887654 89999 9997744
No 104
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=89.44 E-value=4.9 Score=39.06 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=53.6
Q ss_pred HHHHhcCCCE----EEEEEEECCCCeEEEEEEEEEeeccc-cccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcC
Q psy6919 16 FHRMKASQDY----LVTVIEDTRTKQVIGTGSLILEQKFI-HECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQ 90 (638)
Q Consensus 16 f~~~~~~~~~----~~~Vaede~~gkIVG~~~l~~~~~~~-~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G 90 (638)
++.....|.+ ++-|-. ...+++|||++.....-.. .......+|.-++||+.+|+|+++--|++++-+.+...|
T Consensus 65 L~WaL~pPg~~~~whiGVR~-~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~g 143 (162)
T PF01233_consen 65 LKWALKPPGWKKEWHIGVRV-KSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQG 143 (162)
T ss_dssp HHHHHTSTT--GGGEEEEEE-TTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT
T ss_pred HhheeeCcCCccceEEEEEE-CCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcC
Confidence 3444444433 444433 3479999998766532111 123356778889999999999999999999999999999
Q ss_pred CeEEEEE
Q psy6919 91 CYKLTLD 97 (638)
Q Consensus 91 ~~~I~L~ 97 (638)
+.+-.-+
T Consensus 144 I~qAvyT 150 (162)
T PF01233_consen 144 IWQAVYT 150 (162)
T ss_dssp --EEEEE
T ss_pred ceeeeee
Confidence 8665433
No 105
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=89.36 E-value=0.95 Score=48.82 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHh--------cCCCEEEEEEEECCCCeEEEEEEEEEee----c--------cc----------------
Q psy6919 8 NVFHFAERFHRMK--------ASQDYLVTVIEDTRTKQVIGTGSLILEQ----K--------FI---------------- 51 (638)
Q Consensus 8 s~e~~~~~f~~~~--------~~~~~~~~Vaede~~gkIVG~~~l~~~~----~--------~~---------------- 51 (638)
+.+.+.+++++-. ..+..++||.||.+.|+|||++.+...- + ..
T Consensus 30 d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~ 109 (335)
T TIGR03243 30 DRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLT 109 (335)
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEE
Confidence 5555655554432 1234678999987789999998764211 0 00
Q ss_pred --cccccceeeeEEEECCCCcCCcHHHHHHH
Q psy6919 52 --HECALKGKIEEVVVDDTYRGKELGKLLIA 80 (638)
Q Consensus 52 --~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~ 80 (638)
+.-...-+|..++++|+||+-|.|+.|-+
T Consensus 110 l~nd~tG~sElctLfL~p~~R~~~~G~LLSr 140 (335)
T TIGR03243 110 LSNDLTGSSELCTLFLDPDYRKGGNGRLLSR 140 (335)
T ss_pred eeccCCCCeeeEEEEECHHHcCCCchhhHHH
Confidence 01112345889999999999999998843
No 106
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=88.83 E-value=1.1 Score=48.39 Aligned_cols=73 Identities=25% Similarity=0.369 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHh---------cCCCEEEEEEEECCCCeEEEEEEEEEee----c--------cc---------------
Q psy6919 8 NVFHFAERFHRMK---------ASQDYLVTVIEDTRTKQVIGTGSLILEQ----K--------FI--------------- 51 (638)
Q Consensus 8 s~e~~~~~f~~~~---------~~~~~~~~Vaede~~gkIVG~~~l~~~~----~--------~~--------------- 51 (638)
+.+.+.+++++-. ..+..++||.||.+.|+|||++.+...- + ..
T Consensus 30 d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L 109 (336)
T TIGR03245 30 DRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVL 109 (336)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeE
Confidence 5566666555432 1224678999987789999998764211 0 00
Q ss_pred ---cccccceeeeEEEECCCCcCCcHHHHHHH
Q psy6919 52 ---HECALKGKIEEVVVDDTYRGKELGKLLIA 80 (638)
Q Consensus 52 ---~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~ 80 (638)
+.-...-+|..++++|+||+-|.|+.|-+
T Consensus 110 ~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr 141 (336)
T TIGR03245 110 YMCHELTGSSLLCSFYVDPRLRKTEAAELLSR 141 (336)
T ss_pred EeeccCCCCeeeEEEEECHHHcCCCchhHHHH
Confidence 01112345889999999999999998843
No 107
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=87.61 E-value=0.9 Score=39.87 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=39.0
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCe
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCY 92 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~ 92 (638)
+|..|.+... ...+++.--+.-|+|||||+.+.++-...+...++|+.
T Consensus 7 eG~PVSW~lm----------dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P 54 (89)
T PF08444_consen 7 EGNPVSWSLM----------DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP 54 (89)
T ss_pred CCCEeEEEEe----------cccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC
Confidence 5778776643 23455667889999999999999999999999999864
No 108
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=86.76 E-value=1.7 Score=45.78 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=37.8
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcC
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQ 90 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G 90 (638)
+..+||+.+=-. . ......+.-|.|-|.||++|+|+.|++..-+.++..|
T Consensus 139 g~h~vGYFSKEK---~---s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 139 GSHIVGYFSKEK---V---SAEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred CcEEEEEeceec---c---ccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 446888865321 1 1112347789999999999999999999999998876
No 109
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=85.01 E-value=8.6 Score=39.84 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=51.6
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEeeccccccCCcEEEEEE
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDFSFYTCWKLSYIFLMVI 114 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~~fYek~~~GF~~~gv~ 114 (638)
+|++||++.+.+... +- .-.--+=||++-.+++|+..+-.-+++|++.|..-+.| ||-+
T Consensus 152 ~g~LiaVav~D~l~d-----~l--SAVY~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YL----------GY~I---- 210 (240)
T PRK01305 152 DGKLVAVAVTDVLDD-----GL--SAVYTFYDPDEEHRSLGTFAILWQIELAKRLGLPYVYL----------GYWI---- 210 (240)
T ss_pred CCeEEEEEEEeccCC-----ce--eeEEEeeCCCccccCCHHHHHHHHHHHHHHcCCCeEee----------eEEE----
Confidence 799999987754322 11 11136679999999999999999999999998755544 4422
Q ss_pred Eeehhheeeeccc
Q psy6919 115 RSQVLKMVYTAGY 127 (638)
Q Consensus 115 k~~~~~~vyk~aY 127 (638)
....+|-||..|
T Consensus 211 -~~c~kM~YK~~f 222 (240)
T PRK01305 211 -KGSRKMNYKARF 222 (240)
T ss_pred -CCCCcccccccC
Confidence 345678888888
No 110
>PRK14348 lipoate-protein ligase B; Provisional
Probab=84.54 E-value=15 Score=37.70 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=71.8
Q ss_pred cCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcc-eeeecCcEEEeC----ceeEEEE
Q psy6919 418 GRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDL-GIKWPNDLYVNG----NVKLGGI 492 (638)
Q Consensus 418 GR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v-~IKWPNDIy~~~----~kKigGI 492 (638)
.|+|...+--||++..=.++...... -.+-.+-...--++.++++++ +++. +.+..-.||+++ .+|||.|
T Consensus 79 ~RGG~iTyHGPGQlV~Ypil~L~~~~---~~v~~yv~~lE~~vI~~l~~~--gi~~~~~~~~~GVWv~~~~~~~~KIaaI 153 (221)
T PRK14348 79 DRGGDITYHGPGQLVCYPILNLEEFG---LGLKEYVHLLEEAVIRVCASY--GVVAGRLEKATGVWLEGDTSRARKICAI 153 (221)
T ss_pred CCCCceEEECCCeEEEEEEEEccccC---CCHHHHHHHHHHHHHHHHHHc--CCceeecCCCCCEEecCCCCCCCcEEEE
Confidence 68899999999998432344432211 123333333344777888887 3544 667888899973 2799987
Q ss_pred EeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccc------cCCCC-----CCCCHHHHHHHHHHHHHHH
Q psy6919 493 IVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFS------ANPSS-----PLLSYEQYFALVFNHLEQL 555 (638)
Q Consensus 493 LvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~------~~tsl-----~~i~r~~Lla~il~~le~l 555 (638)
=+-.. . ..-.=|+.|||+++.. ..+.+.. ..||+ ..++.+++...+..+|.+.
T Consensus 154 Gv~v~--r------~vT~HG~ALNv~~dL~--~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~~~ 217 (221)
T PRK14348 154 GVRSS--H------YVTMHGLALNVNTDLR--YFSYIHPCGFIDKGVTSLQQELGHSIDMAEVKERLGRELLAA 217 (221)
T ss_pred eEEec--c------ceeecceEEEecCChH--HhccCccCCCCCCcEEeeHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 55432 1 1122499999997521 0011100 12333 2467778888888777654
No 111
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=84.22 E-value=5.1 Score=42.88 Aligned_cols=94 Identities=11% Similarity=-0.129 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHH
Q psy6919 5 PTSNVFHFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVK 84 (638)
Q Consensus 5 p~~s~e~~~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e 84 (638)
|..+.+-|++.++.+.. +..++++++ .+|++||.+.+.... ...+-.-...++++|..+-+..|+-++++
T Consensus 177 p~~~~~~f~~l~~~~~~--~~~l~~a~~-~~g~~va~~l~~~~~-------~~~~~~~~g~~~~~~~~~~~~lL~w~~i~ 246 (330)
T TIGR03019 177 PVFSRRYFRLLKDVFGE--DCEVLTVRL-GDGVVASAVLSFYFR-------DEVLPYYAGGLREARDVAANDLMYWELMR 246 (330)
T ss_pred CCCCHHHHHHHHHhccc--CEEEEEEEe-CCCCEEEEEEEEEeC-------CEEEEEeccChHHHHhhChHHHHHHHHHH
Confidence 44566666666665532 345566663 268888875543221 11111234567899999999999999999
Q ss_pred HHHHcCCeEEEEEe--------eccccccCCcEE
Q psy6919 85 LAKHFQCYKLTLDF--------SFYTCWKLSYIF 110 (638)
Q Consensus 85 ~Ar~~G~~~I~L~~--------~fYek~~~GF~~ 110 (638)
+|+++||....+.. .|.++ +||+.
T Consensus 247 ~a~~~G~~~fDfG~s~~~~G~~~FK~~--~G~~~ 278 (330)
T TIGR03019 247 RACERGLRVFDFGRSKRGTGPFKFKKN--WGFEP 278 (330)
T ss_pred HHHHCCCcEEEcCCCCCCCccHHHHhc--CCCee
Confidence 99999999998864 35556 78865
No 112
>KOG2696|consensus
Probab=81.78 E-value=2 Score=46.57 Aligned_cols=59 Identities=15% Similarity=0.327 Sum_probs=41.9
Q ss_pred eEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHH-HHHHHcCCeEEEEE
Q psy6919 37 QVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLV-KLAKHFQCYKLTLD 97 (638)
Q Consensus 37 kIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~-e~Ar~~G~~~I~L~ 97 (638)
.++|+..+.-.+.+. .+....|..+.+.|.|||+|+|..||+.+. .++.+-.+--++++
T Consensus 199 ~~~gy~tiyk~y~yi--d~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p~v~DiTVE 258 (403)
T KOG2696|consen 199 AYVGYYTIYKFYEYI--DRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEEPTVLDITVE 258 (403)
T ss_pred eeeeeEEEeehhhhh--hhhhhhhheeEEeccccCCchHHHHHHHHHHhhccCCceeEEEec
Confidence 356666555444333 336778999999999999999999999988 45555555555554
No 113
>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins. In each case, the domain adopts a core structure consisting of an open beta-barrel with an SH3-like topology. Lsm (like-Sm) proteins have diverse functions, and are thought to be important modulators of RNA biogenesis and function [, ]. The Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6) []. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker []. In other snRNPs, certain Sm proteins are replaced with different Lsm proteins, such as with U7 snRNPs, in which the D1 and D2 Sm proteins are replaced with U7-specific Lsm10 and Lsm11 proteins, where Lsm11 plays a role in histone U7-specific RNA processing []. Lsm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Lsm proteins. The pleiotropic translational regulator Hfq (host factor Q) is a bacterial Lsm-like protein, which modulates the structure of numerous RNA molecules by binding preferentially to A/U-rich sequences in RNA []. Hfq forms an Lsm-like fold, however, unlike the heptameric Sm proteins, Hfq forms a homo-hexameric ring.; PDB: 1D3B_K 2Y9D_D 2Y9A_D 2Y9C_R 3VRI_C 2Y9B_K 3QUI_D 3M4G_H 3INZ_E 1U1S_C ....
Probab=81.42 E-value=3.6 Score=33.43 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=30.7
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
..|++|++...+|..+.|++.++|+...|++++
T Consensus 6 ~~g~~V~V~l~~g~~~~G~L~~~D~~~Nl~L~~ 38 (67)
T PF01423_consen 6 LIGKRVRVELKNGRTYRGTLVSFDQFMNLVLSD 38 (67)
T ss_dssp TTTSEEEEEETTSEEEEEEEEEEETTEEEEEEE
T ss_pred hCCcEEEEEEeCCEEEEEEEEEeechheEEeee
Confidence 469999999999999999999999999999986
No 114
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=80.74 E-value=4.8 Score=43.45 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=43.9
Q ss_pred CCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcceeeecCcEEEeCceeEEEE
Q psy6919 420 SNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGI 492 (638)
Q Consensus 420 ~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IKWPNDIy~~~~kKigGI 492 (638)
+|..=+-..|++.||++.+.+.. ....+ ...+=.|+++|+++ ++++.+.=+|||.++| +|++|.
T Consensus 73 GGGaVyhD~g~l~~s~i~~~~~~-----~~~~~-~~~~~~i~~aL~~l--Gi~a~~~~rnDl~v~g-kKisGs 136 (324)
T TIGR00545 73 GGGAVFHDLGNICFSFITPKDGK-----EFENA-KIFTRNVIKALNSL--GVEAELSGRNDLVVDG-RKISGS 136 (324)
T ss_pred CCceEEEcCCceEEEEEEcCCcc-----chhhH-HHHHHHHHHHHHHh--CCCeEECCCceEEECC-EEEEEE
Confidence 33444446788899998764211 11112 23345678899988 5777777799999999 899997
No 115
>PTZ00064 histone acetyltransferase; Provisional
Probab=80.52 E-value=3.3 Score=46.76 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=37.6
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcC
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQ 90 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G 90 (638)
+-.+|||.+=-. . ......+..|.|.|.||++|+|+.|+++--+.++..|
T Consensus 368 G~HiVGYFSKEK---~---S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 368 GCHIVGYFSKEK---V---SLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred CcEEEEEecccc---c---CcccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 347888765211 1 1112357789999999999999999999999998876
No 116
>PLN03239 histone acetyltransferase; Provisional
Probab=80.49 E-value=3.6 Score=44.63 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=37.4
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcC
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQ 90 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G 90 (638)
+-.+||+.+=-. . ......+..|.|.|.||++|+|+.|++..-+.++..|
T Consensus 197 g~h~vGYFSKEK---~---s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 197 GFHPVGYYSKEK---Y---SDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEEeeecc---c---CCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 346888765211 1 1112347789999999999999999999999998876
No 117
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=80.08 E-value=6.5 Score=35.16 Aligned_cols=53 Identities=13% Similarity=0.003 Sum_probs=38.0
Q ss_pred eEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy6919 37 QVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF 98 (638)
Q Consensus 37 kIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~ 98 (638)
.-.|++.+.... ......++.-++|.|+.||+|+|+.|++.+.+. ...+...+
T Consensus 18 ~y~~~aIvt~~~----~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d-----~~~L~Wrs 70 (99)
T cd04264 18 GYNAAAIVTYEG----VNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRD-----FPKLFWRS 70 (99)
T ss_pred CceEEEEEeccC----CCCCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEe
Confidence 355655553221 124678999999999999999999999987654 45666654
No 118
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=79.70 E-value=5.5 Score=36.89 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=36.0
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHH
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAK 87 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar 87 (638)
+|-+||++.+.- ...++... .--|.++++-..|||+|+|++-.+.+...++
T Consensus 45 ~~~~igf~l~L~-~~~~~~~i-D~~~~efFIi~k~~~~GvGR~aaK~If~~~~ 95 (143)
T COG5628 45 GGLPVGFALVLD-LAHSPTPI-DRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW 95 (143)
T ss_pred CCceeeeeeeec-ccCCCCcc-cccchheEeeehhhccchhHHHHHHHHHHhh
Confidence 578999986542 22222222 2236789999999999999999888866654
No 119
>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences. They function to mediate RNA-RNA interactions and RNA biogenesis. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Eukaryotic Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6). Since archaebacteria do not have any splicing apparatus, Sm proteins of archaebacteria may play a more general role. Archaeal Lsm proteins are likely to represent the ancestral Sm domain.
Probab=78.62 E-value=5.3 Score=32.90 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=30.9
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEec
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSE 606 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~ 606 (638)
..|++|.|...+|+.+.|+..++|+...|++++.
T Consensus 8 ~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~ 41 (68)
T cd01731 8 SLNKPVLVKLKGGKEVRGRLKSYDQHMNLVLEDA 41 (68)
T ss_pred hcCCEEEEEECCCCEEEEEEEEECCcceEEEeeE
Confidence 3799999999889999999999999999999863
No 120
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=77.79 E-value=4.8 Score=32.11 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=29.7
Q ss_pred CCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 574 NNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 574 ~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
.|++|+|...+|..+.|++.++|+...+.+.+
T Consensus 5 ~g~~V~V~l~~g~~~~G~L~~~D~~~Ni~L~~ 36 (63)
T cd00600 5 VGKTVRVELKDGRVLEGVLVAFDKYMNLVLDD 36 (63)
T ss_pred CCCEEEEEECCCcEEEEEEEEECCCCCEEECC
Confidence 69999999989999999999999999999875
No 121
>PF14563 DUF4444: Domain of unknown function (DUF4444); PDB: 3BFM_A.
Probab=77.06 E-value=9.8 Score=28.62 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=19.8
Q ss_pred CCCEEEEEECCccEEEEEEEeECCCCcEEEEecCCe
Q psy6919 574 NNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGY 609 (638)
Q Consensus 574 ~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~ 609 (638)
+|+.|++ +| .+|+++|+|++-.+++|++++.
T Consensus 1 ~ge~~t~---~g--~tGtFlGvDE~FGmLLr~~~~T 31 (42)
T PF14563_consen 1 IGEEVTV---AG--LTGTFLGVDEDFGMLLRDDDTT 31 (42)
T ss_dssp TTSEEEE---TT--EEEEEEEE-TT--EEEE-SS-E
T ss_pred CCcceEE---cC--cceeEEeeccccceEEEeCCcc
Confidence 3666665 34 5899999999999999987653
No 122
>smart00651 Sm snRNP Sm proteins. small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing
Probab=76.43 E-value=5.7 Score=32.20 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=30.4
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
..|++|++...+|..+.|++.++|+...+.+++
T Consensus 6 ~~~~~V~V~l~~g~~~~G~L~~~D~~~NlvL~~ 38 (67)
T smart00651 6 LIGKRVLVELKNGREYRGTLKGFDQFMNLVLED 38 (67)
T ss_pred hCCcEEEEEECCCcEEEEEEEEECccccEEEcc
Confidence 478999999988999999999999999999975
No 123
>KOG4601|consensus
Probab=76.03 E-value=7.9 Score=39.62 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=42.8
Q ss_pred ceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe------eccccccCCcEEEEEEEeehhheeeecccccC
Q psy6919 57 KGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF------SFYTCWKLSYIFLMVIRSQVLKMVYTAGYLIG 130 (638)
Q Consensus 57 ~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~------~fYek~~~GF~~~gv~k~~~~~~vyk~aY~~~ 130 (638)
..-|-++||++..|+.|.|++|++++.+-- .--.+.+.++- .|-+| ..|-+. -+ .|...-|...+||++
T Consensus 108 ~lcILDFyVheS~QR~G~G~~lfdyMl~kE-~vephQ~a~DrPS~kLl~Fm~k-hYgl~~-tV--wQ~nnfvlfegfF~~ 182 (264)
T KOG4601|consen 108 ALCILDFYVHESEQRSGNGFKLFDYMLKKE-NVEPHQCAFDRPSAKLLQFMEK-HYGLKD-TV--WQSNNFVLFEGFFIG 182 (264)
T ss_pred CceEEEEEeehhhhhcCchHHHHHHHHHhc-CCCchheeccChHHHHHHHHHH-hcCccc-cc--cccCcEEEEehhhcc
Confidence 344789999999999999999999987642 11233444442 45554 123221 11 244556677777766
No 124
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.67 E-value=3.4 Score=46.56 Aligned_cols=89 Identities=12% Similarity=0.182 Sum_probs=63.0
Q ss_pred HHHHHhcCCCEEEEEEEEC---CCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCC
Q psy6919 15 RFHRMKASQDYLVTVIEDT---RTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQC 91 (638)
Q Consensus 15 ~f~~~~~~~~~~~~Vaede---~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~ 91 (638)
..+.|..++++.++-+.-. .|+.+||++.+.... ....|+++...=.--|+++-.+||..+++.|+..|.
T Consensus 448 dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~kk~-------~~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi 520 (574)
T COG3882 448 DVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEKKE-------SEWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSEGI 520 (574)
T ss_pred HHHHHhhCCCeEEEEEEeccccccCceEEEEEEEecC-------CeEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3445666677665544311 245688887664321 233455566555666999999999999999999999
Q ss_pred eEEEEEe----------eccccccCCcEEEE
Q psy6919 92 YKLTLDF----------SFYTCWKLSYIFLM 112 (638)
Q Consensus 92 ~~I~L~~----------~fYek~~~GF~~~g 112 (638)
..+.... .||++ +||+.-+
T Consensus 521 ~tir~~Y~pt~kN~pv~~FyE~--mgf~l~~ 549 (574)
T COG3882 521 NTIRGYYIPTEKNAPVSDFYER--MGFKLKG 549 (574)
T ss_pred ceeeeEecccccCCcHHHHHHH--hcccccc
Confidence 9998864 89999 9997533
No 125
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=74.74 E-value=3.7 Score=45.98 Aligned_cols=50 Identities=22% Similarity=0.178 Sum_probs=37.6
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcC
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQ 90 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G 90 (638)
+-.+|||.+=-. . ......+..|.|.|.||++|+|+.|++..-+.++..|
T Consensus 290 g~h~vGyFSKEk---~---s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 290 GCHMVGYFSKEK---H---SEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred CcEEEEEecccc---c---CcCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 347898865311 1 1112347789999999999999999999999998876
No 126
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=74.15 E-value=6.5 Score=34.74 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=31.2
Q ss_pred eEEEEEEEEEeecc-----------------ccccccceeeeEEEECCCCcCCcHHHHHH
Q psy6919 37 QVIGTGSLILEQKF-----------------IHECALKGKIEEVVVDDTYRGKELGKLLI 79 (638)
Q Consensus 37 kIVG~~~l~~~~~~-----------------~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm 79 (638)
++||++.+...... .......++|..++|+|+||+...-..|.
T Consensus 41 ~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 41 EVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 69999988653221 11123678899999999999998877764
No 127
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=73.64 E-value=64 Score=32.16 Aligned_cols=120 Identities=13% Similarity=0.218 Sum_probs=66.0
Q ss_pred cCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcceeeecCc--EEEeCceeEEEEEee
Q psy6919 418 GRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPND--LYVNGNVKLGGIIVT 495 (638)
Q Consensus 418 GR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IKWPND--Iy~~~~kKigGILvE 495 (638)
.|+|..++--||++..=.++...... -.+-.+.-..--++.++++++ +++.. ..|.+ ||+++ +|||-|=+-
T Consensus 50 ~RGG~iTyHGPGQLV~YpIl~L~~~~---~~v~~yv~~lE~~~I~~l~~~--gi~a~-~~~~~~GVWv~~-~KIasIGv~ 122 (184)
T TIGR00214 50 ERGGQVTYHGPGQQVMYVILDLKRFQ---LDVRWLVTQLEQTVIITLAEL--GIEGE-PIADATGVWVEG-KKVASLGIR 122 (184)
T ss_pred CCCCeeEEECCCeEEEEEEEEchhcC---CCHHHHHHHHHHHHHHHHHHc--CCceE-EcCCCCeEEecC-CEEEEEEEE
Confidence 58888999899998432344432110 112222222334777888887 34443 22333 68887 899987654
Q ss_pred eeecCCcCCCccEEEEEEeeecCCCCCCCccccccc------cCCCC----CCCCHHHHHHHHHHHHHH
Q psy6919 496 SSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFS------ANPSS----PLLSYEQYFALVFNHLEQ 554 (638)
Q Consensus 496 ~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~------~~tsl----~~i~r~~Lla~il~~le~ 554 (638)
.. .....=|+.|||+++... .+.+.. ..||+ ..++.+++...+.++|.+
T Consensus 123 v~--------r~vt~HG~ALNv~~dL~~--F~~I~PCGl~~~~vTSl~~~~~~~~~~~v~~~~~~~f~~ 181 (184)
T TIGR00214 123 VR--------RGCTFHGLALNINMDLSP--FSHINPCGYAGREMGSLNQFLPGATVENVAPLLIKAFAE 181 (184)
T ss_pred Ee--------ccEeecceEEEcCCCchH--hccEEcCCCCCCcEeeHHHHcCCCCHHHHHHHHHHHHHH
Confidence 32 112234999999976211 111110 12333 245677777777777765
No 128
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=73.52 E-value=8.1 Score=32.77 Aligned_cols=33 Identities=9% Similarity=-0.066 Sum_probs=30.7
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
++|++|+|...+|..+.|+..+.|..+.+++.+
T Consensus 8 ~l~~~v~V~l~dgR~~~G~l~~~D~~~NivL~~ 40 (75)
T cd06168 8 LLGRTMRIHMTDGRTLVGVFLCTDRDCNIILGS 40 (75)
T ss_pred hcCCeEEEEEcCCeEEEEEEEEEcCCCcEEecC
Confidence 489999999999999999999999999999975
No 129
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=73.46 E-value=18 Score=30.02 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=30.9
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEec
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSE 606 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~ 606 (638)
..|++|+|+.-+|..+.|++.++|+.-.+.+++.
T Consensus 8 ~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~ 41 (70)
T cd01721 8 AEGHIVTVELKTGEVYRGKLIEAEDNMNCQLKDV 41 (70)
T ss_pred CCCCEEEEEECCCcEEEEEEEEEcCCceeEEEEE
Confidence 4799999999899999999999999999998863
No 130
>PRK00737 small nuclear ribonucleoprotein; Provisional
Probab=73.01 E-value=9 Score=32.03 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=30.4
Q ss_pred CCCEEEEEECCccEEEEEEEeECCCCcEEEEec
Q psy6919 574 NNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSE 606 (638)
Q Consensus 574 ~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~ 606 (638)
.|++|.|...+|+.+.|+..|+|+.-.+++++.
T Consensus 13 ~~k~V~V~lk~g~~~~G~L~~~D~~mNlvL~d~ 45 (72)
T PRK00737 13 LNSPVLVRLKGGREFRGELQGYDIHMNLVLDNA 45 (72)
T ss_pred CCCEEEEEECCCCEEEEEEEEEcccceeEEeeE
Confidence 799999999889999999999999999999863
No 131
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=72.90 E-value=9.2 Score=39.64 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=54.1
Q ss_pred CccEEEeCcccccccCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCc-ceeeecCcEE
Q psy6919 404 HGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDID-LGIKWPNDLY 482 (638)
Q Consensus 404 ~g~vViA~~QTaGRGR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~-v~IKWPNDIy 482 (638)
++ +-++.+.|.|.. + +-..|++.||++++-+... .....+.-...-.+.++++++. +. ....=+|||.
T Consensus 64 ~~-i~vvRR~sGGGa----V-~hd~g~l~~S~i~~~~~~~---~~~~~~~~~~~~~~~~~l~~lg--v~~~~~~~~nDl~ 132 (248)
T COG0095 64 DG-IPVVRRPSGGGA----V-FHDLGNLNYSVITPDEGGL---ESYETLYKFLLQPVIDALRALG--VEGAECPGRNDLV 132 (248)
T ss_pred cC-CcEEEEcCCCce----E-EecCCcEEEEEEECCCCcc---ccHHHHHHHHHHHHHHHHHHcC--CCeeccCCCccee
Confidence 56 778888887753 3 4467788899988654211 1223333445667888999884 56 7778899999
Q ss_pred EeCceeEEEE
Q psy6919 483 VNGNVKLGGI 492 (638)
Q Consensus 483 ~~~~kKigGI 492 (638)
++| +||+|+
T Consensus 133 v~g-kKisG~ 141 (248)
T COG0095 133 VDG-KKISGS 141 (248)
T ss_pred EcC-cEEeeH
Confidence 998 899997
No 132
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=72.51 E-value=7 Score=33.25 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=31.4
Q ss_pred hccCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 571 WLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 571 ~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
.-++|++|.|...+|..+.|++.+.|....|++.+
T Consensus 6 ~~~l~~~V~V~l~dgR~~~G~L~~~D~~~NlVL~~ 40 (79)
T cd01717 6 LQLINYRLRVTLQDGRQFVGQFLAFDKHMNLVLSD 40 (79)
T ss_pred HHHcCCEEEEEECCCcEEEEEEEEEcCccCEEcCC
Confidence 34589999999989999999999999999999975
No 133
>PRK14342 lipoate-protein ligase B; Provisional
Probab=72.10 E-value=59 Score=33.17 Aligned_cols=122 Identities=13% Similarity=0.222 Sum_probs=68.6
Q ss_pred ccCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcceeeecC--cEEEeCceeEEEEEe
Q psy6919 417 TGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPN--DLYVNGNVKLGGIIV 494 (638)
Q Consensus 417 RGR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IKWPN--DIy~~~~kKigGILv 494 (638)
-.|+|..++--||++..=.++...... ..+-.+-...-=++.++++++ +++..-+ |. -||+++ +|||-|=+
T Consensus 69 ~~RGG~iTyHGPGQLV~YpIl~L~~~~---~~~~~yv~~lE~~vi~~l~~~--gi~~~~~-~~~~GVWv~~-~KIaaIGv 141 (213)
T PRK14342 69 SDRGGQVTYHGPGQLVMYVLLDLKRLK---LGVRQLVTAIEQTVINTLAEY--GIEAHAK-PDAPGVYVDG-KKIASLGL 141 (213)
T ss_pred ecCCCceEEECCCeEEEEEEEEccccC---CCHHHHHHHHHHHHHHHHHHc--CCceeec-CCCCcCcccC-CEEEEEEE
Confidence 368899999999998322333332111 122222222334567888887 3544333 22 477777 79998865
Q ss_pred eeeecCCcCCCccEEEEEEeeecCCCCCCCccccccc------cCCCC----CCCCHHHHHHHHHHHHHHH
Q psy6919 495 TSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFS------ANPSS----PLLSYEQYFALVFNHLEQL 555 (638)
Q Consensus 495 E~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~------~~tsl----~~i~r~~Lla~il~~le~l 555 (638)
-..- ..-.=|+.|||+++... .+.+.. ..||+ ..++.+++...++.+|.+.
T Consensus 142 ~v~r--------~vT~HG~AlNv~~dL~~--F~~IvPCGl~~~~vTSl~~~~~~~~~~~v~~~~~~~f~~~ 202 (213)
T PRK14342 142 RIRR--------GCSFHGLALNVNMDLSP--FLRINPCGYAGLEMTQLSDLGGPATVDEVAPRLLAELLAL 202 (213)
T ss_pred eEec--------ceeecceeEecCCCchh--hCcEecCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 5321 12235999999976310 111110 12343 2467778888888887765
No 134
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.33 E-value=18 Score=36.58 Aligned_cols=78 Identities=10% Similarity=0.051 Sum_probs=52.2
Q ss_pred EEEEECCCCeEEEEEEEEEeec----------ccc-----ccccceeeeEEEECC--CCcCCc----HHHHHHHHHHHHH
Q psy6919 28 TVIEDTRTKQVIGTGSLILEQK----------FIH-----ECALKGKIEEVVVDD--TYRGKE----LGKLLIAVLVKLA 86 (638)
Q Consensus 28 ~Vaede~~gkIVG~~~l~~~~~----------~~~-----~~~~~~~I~~l~V~p--~yRGkG----IGk~Lm~~l~e~A 86 (638)
+++.+ .+|+|+|++.+..... +.. .....-+..+.+|++ .-|+.| ++..|+.-++++|
T Consensus 55 ll~~~-~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a 133 (209)
T COG3916 55 LLALT-SDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYA 133 (209)
T ss_pred EEEEc-CCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHH
Confidence 44433 3799999998864221 111 011344566789987 444333 5889999999999
Q ss_pred HHcCCeEEEEEe-----eccccccCCc
Q psy6919 87 KHFQCYKLTLDF-----SFYTCWKLSY 108 (638)
Q Consensus 87 r~~G~~~I~L~~-----~fYek~~~GF 108 (638)
.++|+.+|.-.+ +..++ .||
T Consensus 134 ~~~G~~~IvtVt~~~meril~r--~Gw 158 (209)
T COG3916 134 LARGITGIVTVTDTGMERILRR--AGW 158 (209)
T ss_pred HHcCCceEEEEEchHHHHHHHH--cCC
Confidence 999999987765 45566 677
No 135
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=69.75 E-value=3.7 Score=42.67 Aligned_cols=67 Identities=18% Similarity=0.086 Sum_probs=49.1
Q ss_pred EEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe-----eccccccCCcEEEEEEEeehhheeeecccccCCchhHhH
Q psy6919 63 VVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF-----SFYTCWKLSYIFLMVIRSQVLKMVYTAGYLIGHPEAKTK 137 (638)
Q Consensus 63 l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~-----~fYek~~~GF~~~gv~k~~~~~~vyk~aY~~~~~e~~i~ 137 (638)
|+|...+. |-...|++.+.+.|+++|+.+|..-+ .+|++ .||...+++.. ||.+ +|+.=
T Consensus 13 ~~~~~~~~--~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~--~g~~~e~~i~~----------~f~g--~~~~~ 76 (266)
T TIGR03827 13 IYVMKLTG--NDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEE--RGYLEEAKIPG----------YFNG--HDAYF 76 (266)
T ss_pred EEEEecCC--ccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHH--CCCeEEEeccc----------ccCC--CceEE
Confidence 34444443 34789999999999999999999987 78999 99999888765 6655 24444
Q ss_pred HHHHHhhh
Q psy6919 138 LLDTARKL 145 (638)
Q Consensus 138 ~l~~~~~~ 145 (638)
|-+.+++.
T Consensus 77 ~~~~~~~~ 84 (266)
T TIGR03827 77 MSKYLDED 84 (266)
T ss_pred EEEcCchH
Confidence 44444443
No 136
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=69.57 E-value=8.3 Score=34.53 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=31.8
Q ss_pred ccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy6919 55 ALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF 98 (638)
Q Consensus 55 ~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~ 98 (638)
....++.-++|.|+.||+|+|+.|++.+.+. +.++...+
T Consensus 32 ~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d-----~~~L~Wrs 70 (99)
T cd04265 32 DGVPYLDKFAVSSSAQGEGTGEALWRRLRRD-----FPKLFWRS 70 (99)
T ss_pred CCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEe
Confidence 3578899999999999999999999987654 34566654
No 137
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=68.89 E-value=12 Score=30.77 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=29.8
Q ss_pred CCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 574 NNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 574 ~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
.|++|+|...+|+.+.|+..++|+.=.|.+++
T Consensus 9 ~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~~ 40 (67)
T cd01726 9 IGRPVVVKLNSGVDYRGILACLDGYMNIALEQ 40 (67)
T ss_pred CCCeEEEEECCCCEEEEEEEEEccceeeEEee
Confidence 79999999988999999999999999999876
No 138
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=68.66 E-value=25 Score=29.20 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHhhccCCCEEEEEECCccEEEEEEEeECCCCcEEEEecCCeEEEEecCC
Q psy6919 567 YYKHWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGYIFSVRPDG 617 (638)
Q Consensus 567 y~~~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~sge 617 (638)
|...--+.|++|.+.+..| .+.|+..++.+| ++.++.. |+...+.-..
T Consensus 13 yq~lq~liG~~vvV~T~~g-~v~G~L~~V~pD-hIvl~~~-~~~~~IR~~~ 60 (66)
T PF10842_consen 13 YQTLQSLIGQRVVVQTTRG-SVRGILVDVKPD-HIVLEEN-GTPFFIRIAQ 60 (66)
T ss_pred HHHHHHhcCCEEEEEEcCC-cEEEEEEeecCC-EEEEEeC-CcEEEEEeee
Confidence 3445567999999999876 579999999988 7788754 6665555444
No 139
>cd01728 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm1 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=68.53 E-value=11 Score=31.90 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=30.8
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEec
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSE 606 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~ 606 (638)
+++++|.|...+|+.+.|+..|+|..+.|++.+.
T Consensus 10 ~l~k~v~V~l~~gr~~~G~L~~fD~~~NlvL~d~ 43 (74)
T cd01728 10 DLDKKVVVLLRDGRKLIGILRSFDQFANLVLQDT 43 (74)
T ss_pred hcCCEEEEEEcCCeEEEEEEEEECCcccEEecce
Confidence 4799999999889999999999999999999753
No 140
>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit F is capable of forming both homo- and hetero-heptamer ring structures. To form the hetero-heptamer, Sm subunit F initially binds subunits E and G to form a trimer which then assembles onto snRNA along with the D3/B and D1/D2 heterodimers.
Probab=67.73 E-value=13 Score=30.62 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=30.3
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
..|++|+|...+|..+.|+..++|+.=.+.+++
T Consensus 9 ~~g~~V~V~Lk~g~~~~G~L~~~D~~mNi~L~~ 41 (68)
T cd01722 9 LTGKPVIVKLKWGMEYKGTLVSVDSYMNLQLAN 41 (68)
T ss_pred cCCCEEEEEECCCcEEEEEEEEECCCEEEEEee
Confidence 389999999999999999999999999999875
No 141
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=66.23 E-value=15 Score=38.83 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHhc--------CCCEEEEEEEECCCCeEEEEEEEEEee----c--------cc----------------
Q psy6919 8 NVFHFAERFHRMKA--------SQDYLVTVIEDTRTKQVIGTGSLILEQ----K--------FI---------------- 51 (638)
Q Consensus 8 s~e~~~~~f~~~~~--------~~~~~~~Vaede~~gkIVG~~~l~~~~----~--------~~---------------- 51 (638)
+.+.+..++..-.+ .+..+++|.||.+.|+++|++.+...- + +.
T Consensus 32 de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~vGl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~ 111 (336)
T COG3138 32 DEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAVGLNDPFYSYRVGTLVHASPELNVYNEIPTLF 111 (336)
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEeeccCCccceeeeeeeeecCccccccccceeEE
Confidence 55666666554322 123567888886689999997553210 0 00
Q ss_pred --cccccceeeeEEEECCCCcCCcHHHHH
Q psy6919 52 --HECALKGKIEEVVVDDTYRGKELGKLL 78 (638)
Q Consensus 52 --~~~~~~~~I~~l~V~p~yRGkGIGk~L 78 (638)
+......++..++++|+||.-|-|+.|
T Consensus 112 L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Ll 140 (336)
T COG3138 112 LSNDLTGNSELCTLFLDPDWRKGGNGRLL 140 (336)
T ss_pred EeccCcCchhhhheeecHHHhcccchhhh
Confidence 011123447789999999999988876
No 142
>KOG2747|consensus
Probab=65.26 E-value=9.8 Score=41.99 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=29.4
Q ss_pred eeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCC
Q psy6919 58 GKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQC 91 (638)
Q Consensus 58 ~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~ 91 (638)
..+.-|-|.|-||++|+|+.|+++--+..|..|.
T Consensus 261 yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E~~ 294 (396)
T KOG2747|consen 261 YNLACILTLPPYQRKGYGKLLIDFSYELSRREGK 294 (396)
T ss_pred cceeeeeecChhhhcccchhhhhhhhhhhcccCc
Confidence 4477899999999999999999999888876553
No 143
>KOG2036|consensus
Probab=64.96 E-value=5.3 Score=46.81 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=28.5
Q ss_pred ceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHc
Q psy6919 57 KGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHF 89 (638)
Q Consensus 57 ~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~ 89 (638)
-++|.+|+|||+|++.|+|++-++-+.++-.-+
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~ 646 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGK 646 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHhcc
Confidence 467999999999999999999999888876543
No 144
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=64.57 E-value=29 Score=29.49 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCCEEEEEECCccEEEEEEEeECCCCcEEEEec
Q psy6919 574 NNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSE 606 (638)
Q Consensus 574 ~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~ 606 (638)
.+++|.|...+|+.+.|+++|.|..=.|++++.
T Consensus 12 ~~~~V~V~l~~gr~~~G~L~g~D~~mNlvL~da 44 (76)
T cd01732 12 IGSRIWIVMKSDKEFVGTLLGFDDYVNMVLEDV 44 (76)
T ss_pred CCCEEEEEECCCeEEEEEEEEeccceEEEEccE
Confidence 689999988889999999999999999999753
No 145
>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit G binds subunits E and F to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=64.44 E-value=15 Score=30.88 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=30.2
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
++|++|.|...+|..+.|+..|+|+.-.|++++
T Consensus 8 ~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~ 40 (72)
T cd01719 8 YMDKKLSLKLNGNRKVSGILRGFDPFMNLVLDD 40 (72)
T ss_pred hCCCeEEEEECCCeEEEEEEEEEcccccEEecc
Confidence 379999999888999999999999999999975
No 146
>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=63.87 E-value=14 Score=31.09 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=30.2
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
+++++|.+...+|+.+.|+..|.|....|++.+
T Consensus 7 ~l~~~V~V~l~dgr~~~G~L~~~D~~~NlvL~~ 39 (74)
T cd01727 7 YLNKTVSVITVDGRVIVGTLKGFDQATNLILDD 39 (74)
T ss_pred hcCCEEEEEECCCcEEEEEEEEEccccCEEccc
Confidence 379999999888999999999999999999975
No 147
>PRK14344 lipoate-protein ligase B; Provisional
Probab=63.02 E-value=1.2e+02 Score=31.20 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=67.0
Q ss_pred ccCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcceeeec--CcEEEeCceeEEEEEe
Q psy6919 417 TGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWP--NDLYVNGNVKLGGIIV 494 (638)
Q Consensus 417 RGR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IKWP--NDIy~~~~kKigGILv 494 (638)
-.|+|...+--||++..=.++...... ..+-.+-...-=++.++++++ +++...+ | =-||+++ +|||-|=+
T Consensus 87 ~~RGG~iTyHGPGQLV~YpIl~L~~~~---~~v~~yv~~lE~~ii~~l~~~--gi~~~~~-~~~~GVWv~~-~KIaaIGv 159 (223)
T PRK14344 87 IDRGGEVTHHMPGQLVTYLVLDLRRFN---KDLNWYLRQLEQVLIDVLADL--GIDGERL-DGLTGVWIGN-KKVASIGI 159 (223)
T ss_pred cCCCceeeEECCCcEEEEEEEEccccC---CCHHHHHHHHHHHHHHHHHHc--CCceeec-CCCCcEEcCC-CeEEEEeE
Confidence 468899999999998433344432211 112222222334666788876 3544322 3 2367777 89998865
Q ss_pred eeeecCCcCCCccEEEEEEeeecCCCCCCCccccccc------cCCCC----CCCCHHHHHHHHHHHHHH
Q psy6919 495 TSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFS------ANPSS----PLLSYEQYFALVFNHLEQ 554 (638)
Q Consensus 495 E~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~------~~tsl----~~i~r~~Lla~il~~le~ 554 (638)
-.. .....=|+.|||+++... .+.+.. ..||+ ..++.+++...++++|.+
T Consensus 160 ~v~--------r~vT~HG~ALNv~~dL~~--F~~IvPCGl~~~~vTSl~~~~~~~~~~~v~~~l~~~f~~ 219 (223)
T PRK14344 160 GCR--------RWITQHGFSLNVDCDLEG--FNKIVPCGLEGCQVGRLSDWIPGLNIKEVKPLLKKSLQE 219 (223)
T ss_pred eEe--------cceeecceEEecCCCccc--cCcEEcCCCCCCcEeeHHHHcCCCCHHHHHHHHHHHHHH
Confidence 532 112335999999976310 111111 12333 246777777777777755
No 148
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=62.88 E-value=77 Score=30.33 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHH--HHHHH--hcCCcHHHH---HHHHHhhccCCCEEEEEECCccEEEEEEEeEC-CCCcEEEEecC
Q psy6919 536 SPLLSYEQYFALVFN--HLEQL--MEGDFDEIY---DLYYKHWLHNNVNVTVVSERGEAQQVKIIGID-DFGFLNVRSEE 607 (638)
Q Consensus 536 l~~i~r~~Lla~il~--~le~l--~~~g~~~~l---~~y~~~~~~~G~~V~v~~~~g~~~~G~i~GId-d~G~Llv~~~~ 607 (638)
+.+.+-.++++.+.. .+|.. .....+.+. ..-....-+.|+.|.+...+|+..+|+|.+|. .+|.-.+...+
T Consensus 46 l~P~D~tefiaQlAQfs~lEq~~~~n~~l~~l~~~~~~~~~a~slVGk~V~~~~~~g~~~tG~V~~V~~~~g~~~~~~v~ 125 (142)
T PRK09618 46 TNPMEDKEFIAQMAQFSSLEQMTNMNKSMEKLVSSSDGLTKYSELIGKEVEWEGEDGEIVSGTVTSVKQKDGDYPLVLDN 125 (142)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCEEEEEeCCCCEEEEEEEEEEEcCCcEEEEEEC
Confidence 456777888876533 44443 122333332 11124456789999997777888999999996 56654332346
Q ss_pred CeEEEE
Q psy6919 608 GYIFSV 613 (638)
Q Consensus 608 G~~~~v 613 (638)
|+...+
T Consensus 126 G~~~~l 131 (142)
T PRK09618 126 GTWIVA 131 (142)
T ss_pred CEEEec
Confidence 754444
No 149
>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm7 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=59.62 E-value=18 Score=31.03 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=30.3
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
++|++|.|...+|..+.|+..|.|....|++.+
T Consensus 10 ~i~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~~ 42 (81)
T cd01729 10 YVDKKIRVKFQGGREVTGILKGYDQLLNLVLDD 42 (81)
T ss_pred hcCCeEEEEECCCcEEEEEEEEEcCcccEEecC
Confidence 489999998888999999999999999999965
No 150
>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=59.35 E-value=34 Score=29.34 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=30.9
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEec
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSE 606 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~ 606 (638)
..|++|+|+.-+|..+.|+..++|+.=.+.+++.
T Consensus 9 l~g~~V~VeLKng~~~~G~L~~vD~~MNi~L~n~ 42 (81)
T cd01725 9 LVGKEVTVELKNDLSIRGTLHSVDQYLNIKLTNI 42 (81)
T ss_pred CCCCEEEEEECCCcEEEEEEEEECCCcccEEEEE
Confidence 3899999999889999999999999999999863
No 151
>PRK14343 lipoate-protein ligase B; Provisional
Probab=57.99 E-value=1.6e+02 Score=30.54 Aligned_cols=122 Identities=11% Similarity=0.161 Sum_probs=67.6
Q ss_pred cCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcceee-ecCcEEEe-----CceeEEE
Q psy6919 418 GRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIK-WPNDLYVN-----GNVKLGG 491 (638)
Q Consensus 418 GR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IK-WPNDIy~~-----~~kKigG 491 (638)
.|+|...+--||++..=.++...... -.+-.+-...-=++.++++++ +++..-+ =.=-||++ + +|||-
T Consensus 80 dRGG~iTyHGPGQLV~YpIl~L~~~~---~~v~~yv~~lE~~vI~~l~~~--gi~~~~~~~~~GVwv~~~~~~~-~KIaa 153 (235)
T PRK14343 80 DRGGQITYHGPGQVVAYLLLDLRRRK---LMVRELVTRIEQAVIDTLAAY--NLASERKAGAPGIYVASGPHQG-AKIAA 153 (235)
T ss_pred CCCCceeEeCCCeEEEEEEEEccccC---CCHHHHHHHHHHHHHHHHHHc--CCceeecCCCCeEEEeCCCCCC-CeEEE
Confidence 78899999999998432344432211 122333233334777888887 4554333 11246776 6 79998
Q ss_pred EEeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccc------cCCCC----CCCCHHHHHHHHHHHHHHH
Q psy6919 492 IIVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFS------ANPSS----PLLSYEQYFALVFNHLEQL 555 (638)
Q Consensus 492 ILvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~------~~tsl----~~i~r~~Lla~il~~le~l 555 (638)
|=+-.. . ..-.=|+.|||+++... .+.+.. ..||+ ..++.+++...++++|.+.
T Consensus 154 IGv~v~--r------~vT~HG~ALNv~~DL~~--F~~I~PCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~~~ 217 (235)
T PRK14343 154 LGLKIR--N------GCSYHGLSLNVKMDLRP--FLAINPCGYAGLETVDMASLGVAADWADVAQTLARRLIAN 217 (235)
T ss_pred Eeeeee--c------ceeecccEEEeCCCchh--hCcEECCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 765432 1 12234999999975210 111110 12333 2457777777777777664
No 152
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=56.26 E-value=1.8e+02 Score=29.94 Aligned_cols=120 Identities=16% Similarity=0.270 Sum_probs=62.8
Q ss_pred cCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHH--HHHHHHHhccCCCcce--eeecCcEEEeCceeEEEEE
Q psy6919 418 GRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAI--SIVLAVKSFNQDIDLG--IKWPNDLYVNGNVKLGGII 493 (638)
Q Consensus 418 GR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~al--AV~~aL~~~~~~~~v~--IKWPNDIy~~~~kKigGIL 493 (638)
+|+|..=+-=+|+.-.=.++..... +...-.++.++ ||.++|.++. +... =+=|. +|+++.+|||-|=
T Consensus 76 ~RGGqvTyHGPGQ~V~Y~ildLkr~-----~~~vr~~V~~LEqavI~tLa~~~--i~~~~~~~~~G-VwV~~~~KIAaiG 147 (221)
T COG0321 76 DRGGQVTYHGPGQLVAYPILDLKRP-----KLDVREYVRALEQAVINTLAEYG--IEAERRPDRPG-VWVEEERKIAAIG 147 (221)
T ss_pred cCCceeEEeCCCcEEEEEEEecccc-----cccHHHHHHHHHHHHHHHHHHcC--CcccccCCCCe-EEecCCceEEEEE
Confidence 4566655556777632233433221 12223344443 7888998874 3221 12222 6666337999876
Q ss_pred eeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccc-----c-CCC----CCCCCHHHHHHHHHHHHHHH
Q psy6919 494 VTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFS-----A-NPS----SPLLSYEQYFALVFNHLEQL 555 (638)
Q Consensus 494 vE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~-----~-~ts----l~~i~r~~Lla~il~~le~l 555 (638)
+-.. .. ...=|+.|||+++-. . .+.+.. . -|| +..++.+++-..+.++|.+.
T Consensus 148 irir--r~------vs~HGlALNv~~DL~-~-F~~I~PCG~~~~~~tsl~d~~~~v~~~~V~~~l~~~~~~~ 209 (221)
T COG0321 148 IRIR--RG------VTFHGLALNVNMDLS-P-FNRIVPCGYAGMEVTSLSDLGPPVTVDEVAKALVAAFAKL 209 (221)
T ss_pred EEEe--cc------cceeeeEEeccCCch-h-ccceeccccCCCceeEHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 5532 11 223499999997621 0 011100 0 122 23477788888888888775
No 153
>PRK06792 flgD flagellar basal body rod modification protein; Validated
Probab=55.72 E-value=1e+02 Score=30.84 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHH--HHHHH--hcCCcHHHHHHHH-----HhhccCCCEEEEEECCccEEEEEEEeEC--CCCcEEEEe
Q psy6919 537 PLLSYEQYFALVFN--HLEQL--MEGDFDEIYDLYY-----KHWLHNNVNVTVVSERGEAQQVKIIGID--DFGFLNVRS 605 (638)
Q Consensus 537 ~~i~r~~Lla~il~--~le~l--~~~g~~~~l~~y~-----~~~~~~G~~V~v~~~~g~~~~G~i~GId--d~G~Llv~~ 605 (638)
.+.+-.++++.+.. .+|.. .+..++.+....+ ...-++||.|.+...+|+...|+|..+. ++|...+..
T Consensus 71 nPmD~tefiaQlAQFSslEQ~~~mn~sl~~L~~~~~s~~l~qa~slIGK~V~~~~~dG~~vtG~V~sV~~~~~g~v~l~v 150 (190)
T PRK06792 71 NAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNDGKQVTGQVETVRLAENNDVQLIV 150 (190)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCCEEEEEEEEEEEccCCcEEEEE
Confidence 34555666665422 34433 1223333333221 2345799999987777777899998874 677776654
Q ss_pred cCCeEEE
Q psy6919 606 EEGYIFS 612 (638)
Q Consensus 606 ~~G~~~~ 612 (638)
+|+...
T Consensus 151 -dg~~v~ 156 (190)
T PRK06792 151 -DNQVVS 156 (190)
T ss_pred -CCEEEe
Confidence 465433
No 154
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=54.62 E-value=72 Score=27.19 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=30.7
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEec
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSE 606 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~ 606 (638)
..|+.|+|+.-+|..+.|++.++|+.=.+.+.+.
T Consensus 17 l~g~~V~VeLKng~~~~G~L~~vD~~MNl~L~~~ 50 (78)
T cd01733 17 LQGKVVTVELRNETTVTGRIASVDAFMNIRLAKV 50 (78)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEcCCceeEEEEE
Confidence 4799999999888999999999999999999863
No 155
>PRK14349 lipoate-protein ligase B; Provisional
Probab=52.59 E-value=2.4e+02 Score=28.95 Aligned_cols=122 Identities=13% Similarity=0.134 Sum_probs=67.7
Q ss_pred cCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCc-cee--eecCcEEEeC----ceeEE
Q psy6919 418 GRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDID-LGI--KWPNDLYVNG----NVKLG 490 (638)
Q Consensus 418 GR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~-v~I--KWPNDIy~~~----~kKig 490 (638)
.|+|...+--+|++..=.++...... ..+-.+-...--++.++++++ +++ ..- +.| -+|+++ .+|||
T Consensus 65 ~RGG~iTyHGPGQLV~YpIldL~~~~---~~vr~yv~~LE~~~I~~l~~~--gi~~a~~~~~~~-GVWv~~~~~~~~KIa 138 (220)
T PRK14349 65 DRGGQVTYHGPGQVLAYTLFDLRRAG---LYVREYVDMLEQATLATLREL--GLEQACRKPGAP-GIYVPQPGGELAKIA 138 (220)
T ss_pred cCCcceEEeCCCcEEEEEEEEcccCC---CCHHHHHHHHHHHHHHHHHHh--CCcceeecCCCC-cEEeCCCCCCCceEE
Confidence 68899999999998432344433211 122222222334677888887 354 322 333 367752 27999
Q ss_pred EEEeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccc------cCCCC----CCCCHHHHHHHHHHHHHHH
Q psy6919 491 GIIVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFS------ANPSS----PLLSYEQYFALVFNHLEQL 555 (638)
Q Consensus 491 GILvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~------~~tsl----~~i~r~~Lla~il~~le~l 555 (638)
-|=+-.. .....=|+.|||+++-. ..+.+.. ..||+ ..++.+++...+.++|.+.
T Consensus 139 aiGv~v~--------r~vT~HG~ALNv~~DL~--~F~~IvPCGl~~~~vTSl~~~g~~~~~~~v~~~l~~~f~~~ 203 (220)
T PRK14349 139 ALGVKVR--------NGYAYHGLALNIDMDLS--PFLGINPCGYEGLRTVDLAACGVRTSVERAGELLAAQLARA 203 (220)
T ss_pred EEeeEEe--------cceeecceeEEecCCch--hhCcEEcCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 8865532 11233599999997521 0111110 12333 2467888888888888765
No 156
>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=52.29 E-value=81 Score=26.56 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=29.6
Q ss_pred CCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 574 NNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 574 ~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
.|++|.|+..+|..+.|++.++|+.=.+.+++
T Consensus 10 ~g~~V~VeLkng~~~~G~L~~~D~~mNi~L~~ 41 (76)
T cd01723 10 QNHPMLVELKNGETYNGHLVNCDNWMNIHLRE 41 (76)
T ss_pred CCCEEEEEECCCCEEEEEEEEEcCCCceEEEe
Confidence 79999999988999999999999999999875
No 157
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=51.16 E-value=44 Score=36.39 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=40.1
Q ss_pred CcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcceeeecCcEEEe---CceeEEEE
Q psy6919 422 NIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVN---GNVKLGGI 492 (638)
Q Consensus 422 r~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IKWPNDIy~~---~~kKigGI 492 (638)
..=+-..|++.||++.+.+. ... . ...=.|++||+++ ++++.+.=.|||.++ |.+||+|-
T Consensus 76 GAVyhD~Gnl~~s~i~~~~~-------~~~-~-~~~~~ii~aL~~l--Gi~a~~~~rnDi~v~~~~g~kKisGs 138 (338)
T PRK03822 76 GAVFHDLGNTCFTFMAGKPE-------YDK-T-ISTSIVLNALNSL--GVSAEASGRNDLVVKTAEGDRKVSGS 138 (338)
T ss_pred ceEEEcCCCcEEEEEeCCCc-------cCH-H-HHHHHHHHHHHHc--CCceeECCCccEEEecCCCCcEEEEE
Confidence 33344568888998865321 111 1 1233688999988 588889889999995 22899993
No 158
>PRK14345 lipoate-protein ligase B; Provisional
Probab=49.53 E-value=2.9e+02 Score=28.67 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=67.4
Q ss_pred cCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCccee-e-ecCcEEEe------CceeE
Q psy6919 418 GRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGI-K-WPNDLYVN------GNVKL 489 (638)
Q Consensus 418 GR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~I-K-WPNDIy~~------~~kKi 489 (638)
.|+|-..+--||++..=.++..... ..+-.+-...--++.++++++ +++..- + -| -||++ + +||
T Consensus 76 dRGG~iTyHGPGQLV~YpIldL~~~----~~v~~yv~~LE~~vI~~l~~~--gi~a~~~~~~~-GVWv~~~~~~~~-~KI 147 (234)
T PRK14345 76 DRGGKITWHGPGQLVGYPIIKLAEP----LDVVDYVRRLEEALIAVCADL--GLNAGRVDGRS-GVWVPADGGRPD-RKI 147 (234)
T ss_pred cCCCceeEeCCCeEEEEEEEecCCC----CCHHHHHHHHHHHHHHHHHHc--CCceeecCCCC-eEEECCCCCCCc-ceE
Confidence 6889999999999832233433211 122222222344777888887 344432 2 23 36775 4 799
Q ss_pred EEEEeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccc------cCCCC-----CCCCHHHHHHHHHHHHHHH
Q psy6919 490 GGIIVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFS------ANPSS-----PLLSYEQYFALVFNHLEQL 555 (638)
Q Consensus 490 gGILvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~------~~tsl-----~~i~r~~Lla~il~~le~l 555 (638)
|-|=+-.. .....=|+.|||+++.. . .+.+.. ..||+ ..++.+++...+.++|.+.
T Consensus 148 aaIGv~v~--------r~vT~HG~ALNV~~DL~-~-F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~~~ 214 (234)
T PRK14345 148 AAIGIRVS--------RGVTMHGFALNCDNDLA-A-FDAIVPCGISDAGVTTLSAELGRTVTVAEVVDPVAAALCDA 214 (234)
T ss_pred EEEEeeec--------cceeecceEEEeCCChH-H-hceEEeCCCCCCcEEehhHhhCCCCCHHHHHHHHHHHHHHH
Confidence 98865432 11233599999997521 0 111111 12343 2367788888888888765
No 159
>KOG2779|consensus
Probab=49.47 E-value=53 Score=35.88 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=48.3
Q ss_pred EEEEEEEECCCCeEEEEEEEEEeec-cccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeE
Q psy6919 25 YLVTVIEDTRTKQVIGTGSLILEQK-FIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYK 93 (638)
Q Consensus 25 ~~~~Vaede~~gkIVG~~~l~~~~~-~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~ 93 (638)
+++-|-.. ..+++|||++.....- ......+.+.|.-++||...|+|+++--|++++-+.+.-.|+-+
T Consensus 135 WHiGVRv~-~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfq 203 (421)
T KOG2779|consen 135 WHIGVRVK-SSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQ 203 (421)
T ss_pred eEEEEEEe-cCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhh
Confidence 44444333 4679999987654221 11123357788899999999999999999999988887766543
No 160
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=48.98 E-value=42 Score=29.43 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=30.4
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
..|++|+|+.-+|..+.|++.++|+.=.+.+++
T Consensus 9 l~g~~V~VeLKng~~~~G~L~~vD~~MNl~L~~ 41 (90)
T cd01724 9 LTNETVTIELKNGTIVHGTITGVDPSMNTHLKN 41 (90)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEcCceeEEEEE
Confidence 379999999989999999999999999999886
No 161
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=47.48 E-value=1.1e+02 Score=22.75 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=30.8
Q ss_pred CEEEEEECCccEEEEEEEeECCCCcEEEEecCCeEEEEecCC
Q psy6919 576 VNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGYIFSVRPDG 617 (638)
Q Consensus 576 ~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~sge 617 (638)
+.|-+..++..-..|.|+.++. +.+.|+..+|+.+++..++
T Consensus 2 ~~vWvpD~~egfv~g~I~~~~g-~~vtV~~~~G~~~tv~~dd 42 (42)
T PF02736_consen 2 KWVWVPDPKEGFVKGEIIEEEG-DKVTVKTEDGKEVTVKKDD 42 (42)
T ss_dssp TEEEEEESSSSEEEEEEEEEES-SEEEEEETTTEEEEEEGGG
T ss_pred CEEEEeCCcccEEEEEEEEEcC-CEEEEEECCCCEEEeCCCC
Confidence 4566766665567889997755 5789999999998887653
No 162
>PRK11911 flgD flagellar basal body rod modification protein; Provisional
Probab=47.12 E-value=2.1e+02 Score=27.39 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHH--HHHHH--hcCCcHHHHHHH-----HHhhccCCCEEEEEECCccEEEEEEEeEC-CCCcEEEEe
Q psy6919 536 SPLLSYEQYFALVFN--HLEQL--MEGDFDEIYDLY-----YKHWLHNNVNVTVVSERGEAQQVKIIGID-DFGFLNVRS 605 (638)
Q Consensus 536 l~~i~r~~Lla~il~--~le~l--~~~g~~~~l~~y-----~~~~~~~G~~V~v~~~~g~~~~G~i~GId-d~G~Llv~~ 605 (638)
+.+.+-.++++.+.. .+|.. .....+.+.... ....-++||.|.....+|..+.|++.+|. .++...+..
T Consensus 45 l~PmD~te~iaQlAQfS~lEq~~~~n~~l~~l~~~~~~~~~~~a~~lIGk~V~~~~~~g~~~tG~V~sV~~~~~~~~~~v 124 (140)
T PRK11911 45 SSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKL 124 (140)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCceeEEEecCCCEEEEEEEEEEEcCCceEEEE
Confidence 456777788776533 44544 122333333211 12345789999876667778899999884 234444433
Q ss_pred c-CCeEEEE
Q psy6919 606 E-EGYIFSV 613 (638)
Q Consensus 606 ~-~G~~~~v 613 (638)
. ++....+
T Consensus 125 ~d~~~~v~l 133 (140)
T PRK11911 125 KDNDSLVPM 133 (140)
T ss_pred EcCCEEEEc
Confidence 3 4444444
No 163
>PRK14852 hypothetical protein; Provisional
Probab=46.38 E-value=33 Score=42.41 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=66.4
Q ss_pred CEEEEEEEECCCCeEEEEEEEEEeec----------------cccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHH
Q psy6919 24 DYLVTVIEDTRTKQVIGTGSLILEQK----------------FIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAK 87 (638)
Q Consensus 24 ~~~~~Vaede~~gkIVG~~~l~~~~~----------------~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar 87 (638)
+..+|++.. .++++|+..+..... +...+...+++..++++|+.|.+-+=-.|++.+.+++.
T Consensus 74 ~t~~~i~k~--~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~ 151 (989)
T PRK14852 74 ATSVFIFKS--YHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSM 151 (989)
T ss_pred cceEEEecc--CCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHH
Confidence 444577753 367788776654321 01123467889999999999988877789999999999
Q ss_pred HcCCeEEEEEe-----eccccccCCcEEEEEEEe
Q psy6919 88 HFQCYKLTLDF-----SFYTCWKLSYIFLMVIRS 116 (638)
Q Consensus 88 ~~G~~~I~L~~-----~fYek~~~GF~~~gv~k~ 116 (638)
..++.-+..+| .||++ =+||+..|..|.
T Consensus 152 ~~~~dd~~i~VnPkH~~FY~r-~l~f~~ig~~r~ 184 (989)
T PRK14852 152 MSEVDDILVTVNPKHVKFYTD-IFLFKPFGEVRH 184 (989)
T ss_pred HcCCCeEEEEECcchHHHHHH-HhCCcccccccc
Confidence 99999999988 89996 269988776544
No 164
>KOG3698|consensus
Probab=45.47 E-value=32 Score=39.61 Aligned_cols=48 Identities=19% Similarity=0.047 Sum_probs=39.6
Q ss_pred EEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe--------eccccccCCcEEEE
Q psy6919 63 VVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF--------SFYTCWKLSYIFLM 112 (638)
Q Consensus 63 l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~--------~fYek~~~GF~~~g 112 (638)
.+++.+.---|+.|++|+-+..-.+.+||..-.+.+ .||.+ +||...+
T Consensus 822 ~~~~~~a~D~~~~k~m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~--lG~~d~~ 877 (891)
T KOG3698|consen 822 TYFGMDASDAHPMKKMIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSE--LGLTDLG 877 (891)
T ss_pred hccccccccchHHHHHHHHHHHHHHhcCCcceeEEechhHHHHHHHHHH--hchHHHh
Confidence 344555567799999999999999999999999987 79999 9995533
No 165
>PF02107 FlgH: Flagellar L-ring protein; InterPro: IPR000527 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins [].; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0009427 bacterial-type flagellum basal body, distal rod, L ring
Probab=44.30 E-value=41 Score=33.23 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=33.9
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccCcccccC
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNGLIAPKQ 631 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~li~~k~ 631 (638)
.+.++|+++.++|.|+|+ |+...-.-+|.-+-.+.|+|.|.-
T Consensus 95 ~ita~Vv~VlpNGnL~I~---G~k~i~vn~e~~~i~lsGiVRp~D 136 (179)
T PF02107_consen 95 TITARVVEVLPNGNLVIE---GEKQIRVNGEEQYIRLSGIVRPED 136 (179)
T ss_pred EEEEEEEEECCCCcEEEE---EEEEEEECCCEEEEEEEEEECHHH
Confidence 478899999999999997 655555667777778999998853
No 166
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=44.28 E-value=82 Score=24.26 Aligned_cols=47 Identities=23% Similarity=0.183 Sum_probs=35.4
Q ss_pred ccCCCEEEEEECCccEEEEEEEeECCCCcEEEEecC-CeEEEEecCCe
Q psy6919 572 LHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEE-GYIFSVRPDGN 618 (638)
Q Consensus 572 ~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~-G~~~~v~sgev 618 (638)
+..|+.|.+...+|.-+.|+|++++.++...|.-.| |....+..+++
T Consensus 3 ~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l 50 (57)
T smart00333 3 FKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDL 50 (57)
T ss_pred CCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHe
Confidence 346887777654677899999999987878887766 87777765543
No 167
>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1.
Probab=44.22 E-value=77 Score=26.52 Aligned_cols=36 Identities=8% Similarity=-0.132 Sum_probs=26.9
Q ss_pred hhccCCCEEEEEECCccEEEEEEEeECC---CCcEEEEe
Q psy6919 570 HWLHNNVNVTVVSERGEAQQVKIIGIDD---FGFLNVRS 605 (638)
Q Consensus 570 ~~~~~G~~V~v~~~~g~~~~G~i~GIdd---~G~Llv~~ 605 (638)
.....|++|.|...+|..++|.+.+.+. +..+.++.
T Consensus 7 ~~~lvG~~V~V~~~~G~~yeGif~s~s~~~~~~~vvLk~ 45 (77)
T PF14438_consen 7 LTNLVGQTVEVTTKNGSVYEGIFHSASPESNEFDVVLKM 45 (77)
T ss_dssp HHTTTTSEEEEEETTS-EEEEEEEEE-T---T--EEEEE
T ss_pred HHhCcCCEEEEEECCCCEEEEEEEeCCCcccceeEEEEe
Confidence 4567899999999999999999999987 55666654
No 168
>KOG3438|consensus
Probab=43.76 E-value=17 Score=32.59 Aligned_cols=43 Identities=28% Similarity=0.365 Sum_probs=37.6
Q ss_pred cceeEEEeccccccCCCcccccccccCCCCCCchhhhhhhcchh
Q psy6919 285 KKMELEFCQSAASRAPSEAYMPILVNEAPSDFNVDEYYRHLNTK 328 (638)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (638)
++.+.+||+ |.+.|||+..+-+=|--++++=-+|++.+.|++-
T Consensus 39 k~peVefcG-YtIPHPse~k~niRIQt~~~~~A~evl~kgl~el 81 (105)
T KOG3438|consen 39 KNPEVEFCG-YTIPHPSEDKINIRIQTRDGDPAVEVLKKGLEEL 81 (105)
T ss_pred cCCceEEEe-ccCCCCchhhheEEEEecCCCcchHHHHHHHHHH
Confidence 355678997 7799999999999999999999999999998763
No 169
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=43.58 E-value=2.9e+02 Score=27.56 Aligned_cols=77 Identities=26% Similarity=0.291 Sum_probs=44.5
Q ss_pred ceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcceeeecCcEEEeCceeEEEEEeeeeecCCcCCCccEEE
Q psy6919 431 AMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCN 510 (638)
Q Consensus 431 ~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IKWPNDIy~~~~kKigGILvE~~~~~~~~~~~~~vV 510 (638)
-|.-+++...-.+.+ ......|-+...-+.+.|.++ +.. ..+==.|||+++ +|+.=-+.... ....-
T Consensus 63 dmlhFIvEhFD~~dl-~~~~~rQRLlv~i~kE~L~~~--gv~-~~R~GDDLy~~~-~KLSVSIAt~s--------~vS~k 129 (183)
T PF04017_consen 63 DMLHFIVEHFDSPDL-KLAYLRQRLLVAIIKEVLEEY--GVK-LRREGDDLYVNG-RKLSVSIATAS--------PVSTK 129 (183)
T ss_dssp EEEEEEEEE-S---H-HHHHHHHHHHHHHHHHHHHTT--T---EEEETTEEEETT-EE-EEEEEEEE--------TTEEE
T ss_pred cceEEEEeeCCCCcH-HHHHHHHHHHHHHHHHHHHhc--CCc-eeecccceeECC-CEEEEEEEecC--------cchhe
Confidence 355666654322111 123445666666778888887 344 345688999999 89865443332 23456
Q ss_pred EEEeeecCCC
Q psy6919 511 IGVGMNLDNS 520 (638)
Q Consensus 511 IGIGINvn~~ 520 (638)
|=+||||.+.
T Consensus 130 IH~GiNV~~~ 139 (183)
T PF04017_consen 130 IHFGINVSSE 139 (183)
T ss_dssp EEEEEESS-T
T ss_pred EEEeEeeccc
Confidence 8999999975
No 170
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=42.33 E-value=43 Score=34.40 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=35.1
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccCcccccC
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNGLIAPKQ 631 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~li~~k~ 631 (638)
.+.++|++|.++|.|+|+ |+.+...-+|.-+-.++|+|+|.-
T Consensus 138 tIta~V~~VlpNGnL~I~---GeK~i~vN~~~e~I~lsGvVRP~D 179 (224)
T PRK12698 138 SISANVMQVLPNGNLVIR---GEKWISINNGDEFIRLTGIVRSQD 179 (224)
T ss_pred EEEEEEEEECCCCCEEEE---EEEEEEECCCEEEEEEEEEECHHH
Confidence 478899999999999997 666666678888888999998864
No 171
>COG1958 LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
Probab=41.72 E-value=53 Score=27.78 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=29.6
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
..|++|.|...+|+.+.|+..++|+.=.|.+.+
T Consensus 15 ~~~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~d 47 (79)
T COG1958 15 LLNKRVLVKLKNGREYRGTLVGFDQYMNLVLDD 47 (79)
T ss_pred hhCCEEEEEECCCCEEEEEEEEEccceeEEEec
Confidence 356999999999999999999999999999875
No 172
>PRK14341 lipoate-protein ligase B; Provisional
Probab=41.44 E-value=4e+02 Score=27.18 Aligned_cols=122 Identities=16% Similarity=0.217 Sum_probs=62.9
Q ss_pred cCCCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcceeeecC--cEEEeC-------cee
Q psy6919 418 GRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPN--DLYVNG-------NVK 488 (638)
Q Consensus 418 GR~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IKWPN--DIy~~~-------~kK 488 (638)
.|+|..=+--||++..=.++...... ..+-.+-...-=++.++++++ +++.. .-|+ -||+++ .+|
T Consensus 70 ~RGG~iTyHGPGQlV~YpIl~L~~~~---~~v~~yv~~lE~~iI~~l~~~--gi~~~-~~~~~~GVWv~~~~~~~~~~~K 143 (213)
T PRK14341 70 GRGGQYTYHGPGQRVAYVMLDLKRRR---RDVRAFVAALEEWIIATLAAF--NIRGE-RREDRVGVWVRRPDKGSGAEDK 143 (213)
T ss_pred CCCcceeEECCCeEEEEEEEEccccC---CCHHHHHHHHHHHHHHHHHHh--CCceE-EcCCCCeEEecCccCCCCCCCc
Confidence 35565555567877322333322111 122222222334566788876 35443 2355 688873 269
Q ss_pred EEEEEeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccc------cCCCC----CCCCHHHHHHHHHHHHHHH
Q psy6919 489 LGGIIVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFS------ANPSS----PLLSYEQYFALVFNHLEQL 555 (638)
Q Consensus 489 igGILvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~------~~tsl----~~i~r~~Lla~il~~le~l 555 (638)
||-|=+-.. . ....=|+.||||++-.. .+.+.. ..||+ ..++.+++...++.+|++.
T Consensus 144 IaaIGv~v~--r------~vT~HG~ALNv~~dL~~--F~~IvPCGl~~~~vTSl~~~g~~~~~~~v~~~l~~~f~~~ 210 (213)
T PRK14341 144 IAAIGVRLR--R------WVSFHGISINVEPDLSH--FSGIVPCGISEHGVTSLVDLGLPVTMDDVDAALKKAFEKV 210 (213)
T ss_pred EEEEeeeEe--c------ceeccceEEEecCChhh--hCcEecCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 998865532 1 12234999999975210 011110 12333 2467777777777777653
No 173
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=41.26 E-value=1.6e+02 Score=23.63 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=32.5
Q ss_pred ccCCCEEEEEECCccE-EEEEEEeECC-CCcEEEEecCCeEEEEecCCe
Q psy6919 572 LHNNVNVTVVSERGEA-QQVKIIGIDD-FGFLNVRSEEGYIFSVRPDGN 618 (638)
Q Consensus 572 ~~~G~~V~v~~~~g~~-~~G~i~GIdd-~G~Llv~~~~G~~~~v~sgev 618 (638)
+..|+.|.+.-++... ++|+|.++|. ...-.|.-+||....+.-+++
T Consensus 6 ~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lke~di 54 (55)
T PF09465_consen 6 FAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELELKENDI 54 (55)
T ss_dssp S-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEEECCCE
T ss_pred ccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEeccccc
Confidence 4579999998887655 4999999987 556677788998877766554
No 174
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=40.98 E-value=46 Score=34.15 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=34.8
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccCcccccC
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNGLIAPKQ 631 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~li~~k~ 631 (638)
.+.++|++|.++|.|+|+ |+.+...-+|.-+-.++|+|.|.-
T Consensus 137 ~Ita~V~~VlpNGnLvI~---G~K~i~vN~e~~~i~lsGiVRP~D 178 (222)
T PRK00249 137 TITVTVTQVLPNGNLVIR---GEKEVRVNQGTEFLRVSGVVRPRD 178 (222)
T ss_pred EEEEEEEEECCCCcEEEE---EEEEEEECCCEEEEEEEEEECHHH
Confidence 478899999999999997 666666678888888999998863
No 175
>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []. Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.
Probab=39.88 E-value=66 Score=26.92 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.0
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEE
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFS 612 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~ 612 (638)
+.++.+++|+++|+|.+=+++|+.+.
T Consensus 4 r~eyqli~I~~Dg~lsLMde~get~e 29 (69)
T PF01287_consen 4 RKEYQLIDIDGDGFLSLMDEDGETRE 29 (69)
T ss_dssp EEEEEEEEEETTTEEEEEETTS-EEE
T ss_pred EEEEEEEEEccCcEEEEEcCCCCeec
Confidence 35788999999999999999998876
No 176
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=37.77 E-value=1.9e+02 Score=23.71 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=32.3
Q ss_pred HHHHHhhccCCCEEEEEECCccEEEEEEEeECCCCcEEEEecCCeEEE
Q psy6919 565 DLYYKHWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGYIFS 612 (638)
Q Consensus 565 ~~y~~~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~ 612 (638)
+.+....--.+.+|++..-+|....|+|.|.|.. .++++. +|+..-
T Consensus 5 d~fln~~r~~~~~Vti~L~nG~~l~G~I~~fD~f-tVll~~-~g~qqL 50 (61)
T TIGR02383 5 DQFLNTLRKERIPVTVFLVNGVQLKGVIESFDNF-TVLLES-QGKQQL 50 (61)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEeee-EEEEEE-CCcEEE
Confidence 3444444446789999998999999999999986 455554 454433
No 177
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=37.18 E-value=78 Score=33.94 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHH
Q psy6919 23 QDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKH 88 (638)
Q Consensus 23 ~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~ 88 (638)
.|.+++|.. +..|+.+++............+..|..+-|..-|..-|+=..|++|+.-++|+
T Consensus 169 ~NT~IIvYR----etPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~ 230 (304)
T PF11124_consen 169 KNTHIIVYR----ETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQ 230 (304)
T ss_pred CcceEEEEc----CCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHH
Confidence 356667763 57999999887665555566788899999999999999999999999777665
No 178
>PRK14639 hypothetical protein; Provisional
Probab=36.79 E-value=1.1e+02 Score=28.97 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=33.9
Q ss_pred HHhhccCCCEEEEEECCccEEEEEEEeECCCCcEEEEe-cCCeEEEEecCCe
Q psy6919 568 YKHWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS-EEGYIFSVRPDGN 618 (638)
Q Consensus 568 ~~~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~-~~G~~~~v~sgev 618 (638)
+.+--+.|+.|+|...+++.+.|++.++|+++ +.++. ++|+...+.-+++
T Consensus 81 ~~f~r~~G~~v~v~l~~~~~~~G~L~~~~~~~-i~l~~~~~~~~~~i~~~~I 131 (140)
T PRK14639 81 EHFAKSIGELVKITTNEKEKFEGKIVSVDDEN-ITLENLENKEKTTINFNDI 131 (140)
T ss_pred HHHHHhCCCEEEEEECCCcEEEEEEEEEeCCE-EEEEEccCCcEEEEEhHHe
Confidence 33445689999998766788999999998865 44433 3555555554444
No 179
>PF12945 YcgR_2: Flagellar protein YcgR; PDB: 2RDE_B 1YLN_A 3KYG_A.
Probab=35.41 E-value=39 Score=28.36 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=23.6
Q ss_pred cCCCEEEEEE--CCcc--EEEEEEEeECCCCcEEEEec
Q psy6919 573 HNNVNVTVVS--ERGE--AQQVKIIGIDDFGFLNVRSE 606 (638)
Q Consensus 573 ~~G~~V~v~~--~~g~--~~~G~i~GIdd~G~Llv~~~ 606 (638)
..|++|.+.- ++|. .+.-++.|+++++.|.|..+
T Consensus 2 ~iG~~i~i~i~~~~~~~~~y~S~v~g~~~~~~l~i~~P 39 (87)
T PF12945_consen 2 KIGQKIEIEITNPTGEKGRYKSRVIGIDDDRYLIISMP 39 (87)
T ss_dssp -TT-EEEEEEE-TTS-EEEEEEEEEEEETTTEEEEE--
T ss_pred CCCCEEEEEEECCCCceEEEEEEEEEECCCCEEEEEcC
Confidence 4688888865 3322 48889999999999999875
No 180
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=35.37 E-value=24 Score=38.36 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=32.1
Q ss_pred eEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHH
Q psy6919 37 QVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKH 88 (638)
Q Consensus 37 kIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~ 88 (638)
.+||+.+=-. .......+..|-+.|-||++|+|+.|+++--...+.
T Consensus 248 h~vGyFSKEK------~S~~~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~~ 293 (395)
T COG5027 248 HLVGYFSKEK------ESEQDYNLACILTLPPYQRRGYGKLLIDFSYLLSQK 293 (395)
T ss_pred eeeeeechhh------cccccCceEEEEecChhHhcccceEeeeeeeecccc
Confidence 3778764211 122234577899999999999999999886666554
No 181
>PRK14638 hypothetical protein; Provisional
Probab=35.33 E-value=1e+02 Score=29.66 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=34.5
Q ss_pred HHhhccCCCEEEEEECCccEEEEEEEeECCCCcEEEEecCCeEEEEecCCe
Q psy6919 568 YKHWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGN 618 (638)
Q Consensus 568 ~~~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgev 618 (638)
+.+--+.|+.|+|...+++.++|++.++++++ +.+.. +|+.+.+.-+++
T Consensus 93 ~~f~r~~G~~v~V~~~~~k~~~G~L~~~~~~~-i~l~~-~~~~~~i~~~~I 141 (150)
T PRK14638 93 KDYVRFTGKLAKIVTKDGKTFIGRIESFVDGT-ITISD-EKEKYEINIDDV 141 (150)
T ss_pred HHHHHhCCCEEEEEECCCcEEEEEEEEEeCCE-EEEEE-CCcEEEEEhHHc
Confidence 44455689999998877788999999998764 55554 455555554443
No 182
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.50 E-value=1.2e+02 Score=31.60 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=55.1
Q ss_pred CCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEeeccccccCCcEEEEEE
Q psy6919 35 TKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDFSFYTCWKLSYIFLMVI 114 (638)
Q Consensus 35 ~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~~fYek~~~GF~~~gv~ 114 (638)
.|++|+++...+.+. +-. -.-.+-||++...++|+..+-.=+.+|++.|...+.| || +
T Consensus 159 ~G~LvAVavtDvL~d----GlS---sVY~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYL----------GY-----w 216 (253)
T COG2935 159 EGKLVAVAVTDVLPD----GLS---SVYTFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYL----------GY-----W 216 (253)
T ss_pred CCcEEEEEeeecccC----cce---eEEEEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEE----------EE-----E
Confidence 688998876654321 111 2236679999999999999888899999999877665 33 1
Q ss_pred EeehhheeeecccccCCchhHhHHHH
Q psy6919 115 RSQVLKMVYTAGYLIGHPEAKTKLLD 140 (638)
Q Consensus 115 k~~~~~~vyk~aY~~~~~e~~i~~l~ 140 (638)
=.+..+|-||..| .++|.|.
T Consensus 217 I~~c~KM~YKa~f------~P~e~L~ 236 (253)
T COG2935 217 IKGCPKMNYKARF------SPLELLV 236 (253)
T ss_pred ECCccccCccccc------ChHHhhc
Confidence 1345678899988 6666653
No 183
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=33.62 E-value=4.1e+02 Score=26.74 Aligned_cols=93 Identities=17% Similarity=0.014 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHhcCCCEEEEEEEECCCCeEEEEEEEEEeeccccccc-----cceeeeEEEECCCCcCCcHHHHHHHH
Q psy6919 7 SNVFHFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECA-----LKGKIEEVVVDDTYRGKELGKLLIAV 81 (638)
Q Consensus 7 ~s~e~~~~~f~~~~~~~~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~-----~~~~I~~l~V~p~yRGkGIGk~Lm~~ 81 (638)
.+.|+++.+|-. ...--+.+|.+++ +|+|-.+++....+...-... +.++.-- +|...- =-+.||+.
T Consensus 59 fs~eev~Hw~lp--~~~Vv~syVve~~-~~~ITDf~SFY~Lpstvi~~~k~~~l~aAY~fY-~~~~~~----~l~~Lm~D 130 (190)
T PF02799_consen 59 FSEEEVKHWFLP--RKNVVYSYVVEDP-DGKITDFFSFYSLPSTVIGNPKHKTLKAAYSFY-YVATST----RLKELMND 130 (190)
T ss_dssp --HHHHHHHHS---BTTTEEEEEEEET-TSEEEEEEEEEEEEEEESSSSSSSEEEEEEEEE-EEESSS----HHHHHHHH
T ss_pred cCHHHHHhhccc--CCCeEEEEEEecC-CCceeeEEEEeecceeecCCCCccceeeeeeee-eeecCC----CHHHHHHH
Confidence 355555555432 2233567888875 589999988765443221111 2222221 222221 25689999
Q ss_pred HHHHHHHcCCeEE-EEEe----eccccccCCcE
Q psy6919 82 LVKLAKHFQCYKL-TLDF----SFYTCWKLSYI 109 (638)
Q Consensus 82 l~e~Ar~~G~~~I-~L~~----~fYek~~~GF~ 109 (638)
++-.|++.||... .|+. .|-+. +.|-
T Consensus 131 aLi~Ak~~gfDVFNaLd~mdN~~fL~~--lKFg 161 (190)
T PF02799_consen 131 ALILAKNEGFDVFNALDLMDNSSFLED--LKFG 161 (190)
T ss_dssp HHHHHHHTTESEEEEESTTTGGGTTTT--TT-E
T ss_pred HHHHHHHcCCCEEehhhhccchhhHhh--CCcc
Confidence 9999999999986 4544 78888 7774
No 184
>cd01730 LSm3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm3 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=33.29 E-value=81 Score=26.99 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=29.2
Q ss_pred CCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 574 NNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 574 ~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
++++|.|...+|+.+.|+..|.|..=.|++.+
T Consensus 10 ~~k~V~V~l~~gr~~~G~L~~fD~~mNlvL~d 41 (82)
T cd01730 10 LDERVYVKLRGDRELRGRLHAYDQHLNMILGD 41 (82)
T ss_pred CCCEEEEEECCCCEEEEEEEEEccceEEeccc
Confidence 78999999888999999999999999999865
No 185
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=33.04 E-value=77 Score=32.75 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=34.7
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccCcccccC
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNGLIAPKQ 631 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~li~~k~ 631 (638)
.+.++|++|-++|.|+|+ |+.+...-+|.-+-.++|+|+|.-
T Consensus 145 tIta~V~~VlpNGNLvI~---GeK~i~vN~~~e~irlsGiVRP~D 186 (230)
T PRK12700 145 TITTTVIGVLPNGNLQIA---GEKQIAINRGSEYVRFSGVVDPRS 186 (230)
T ss_pred EEEEEEEEECCCCCEEEE---EEEEEEECCCEEEEEEEEEECHHH
Confidence 477899999999999997 666666677888888999998863
No 186
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=32.86 E-value=1.2e+02 Score=35.54 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCCcEEcCCCCceEEEEEeeCccccccCCcchHHHHHHHHHHHHHHhccCCCcceeeecCcEEE----eCceeEEEE
Q psy6919 420 SNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYV----NGNVKLGGI 492 (638)
Q Consensus 420 ~gr~W~Sp~G~~~fSl~l~~~~~~~~~~~~~~l~~~~alAV~~aL~~~~~~~~v~IKWPNDIy~----~~~kKigGI 492 (638)
+|..=+-..|++.||++.+.+ . ..+ ....-.|++||+++ ++++.+.=-|||.+ +| +|++|-
T Consensus 298 GGGAVYHD~GNlnfSfi~~~~--~-----~~~--~~~~~~Ii~aL~~L--GI~ae~sgRNDI~v~~~~~G-kKISGs 362 (562)
T PRK14061 298 GGGAVFHDLGNTCFTFMAGKP--E-----YDK--TISTSIVLNALNAL--GVSAEASGRNDLVVKTAEGD-RKVSGS 362 (562)
T ss_pred CCcEEEEcCCceEEEEEeCCc--c-----cch--HHHHHHHHHHHHHc--CCCeEECCCccEEEeeCCCC-cEEEEE
Confidence 344555577888899876421 1 111 11234678999988 57888888899999 57 899994
No 187
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=32.60 E-value=79 Score=32.43 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=34.3
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccCcccccC
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNGLIAPKQ 631 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~li~~k~ 631 (638)
.+.++|.+|.++|.|+|+ |+.+...-+|.-+-.+.|+|.|.-
T Consensus 135 tIta~V~~VlpNGnL~I~---GeK~i~vN~e~e~i~~sGvVRP~D 176 (221)
T PRK12407 135 SITVAVHQVLPNGVLVIR---GEKWLTLNQGDEYMRVTGLVRADD 176 (221)
T ss_pred EEEEEEEEECCCCCEEEE---EEEEEEECCCEEEEEEEEEECHHH
Confidence 477899999999999997 666666677888888899998753
No 188
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=32.15 E-value=79 Score=32.97 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=34.0
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccCcccccC
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNGLIAPKQ 631 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~li~~k~ 631 (638)
.+.++|+++.++|.|+|+ |+.+.-.-+|.-+-.+.|+|.|.-
T Consensus 162 tItvtVv~VLPNGNLvI~---GeK~i~vN~~~e~IrlsGvVRP~D 203 (246)
T PRK12699 162 TITVTVVDILPNGNLLVS---GEKQIGINQGHEFIRLSGVINPIN 203 (246)
T ss_pred EEEEEEEEECCCCCEEEE---EEEEEEECCCeEEEEEEEEEChhh
Confidence 478899999999999997 555555667778888899988864
No 189
>PRK00395 hfq RNA-binding protein Hfq; Provisional
Probab=32.03 E-value=2.4e+02 Score=24.38 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=32.5
Q ss_pred HHHHHHHhhccCCCEEEEEECCccEEEEEEEeECCCCcEEEEecCCe
Q psy6919 563 IYDLYYKHWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGY 609 (638)
Q Consensus 563 ~l~~y~~~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~ 609 (638)
+.+.+....-..+..|++..-+|-...|.|.|.|.. .++++. +|+
T Consensus 7 lQd~fLn~lr~~~~~VtifL~NG~~l~G~I~~fD~f-tVll~~-~gk 51 (79)
T PRK00395 7 LQDPFLNALRKERVPVTIYLVNGIKLQGQIESFDNF-VVLLRN-TGK 51 (79)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCcEEEEEEEEEccE-EEEEEE-CCc
Confidence 344455555557889999999999999999999986 444544 453
No 190
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=31.89 E-value=80 Score=32.52 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=34.1
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccCcccccC
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNGLIAPKQ 631 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~li~~k~ 631 (638)
.+.++|+++-++|.|+|+ |+.+.-.-+|.-+-.+.|+|.|.-
T Consensus 141 tItv~V~~VlpNGnL~I~---GeK~i~vN~e~e~IrlsGvVRP~D 182 (226)
T PRK12697 141 TITVTVTNVLPNGNLVVS---GEKQMLINQGNEFVRFSGVVNPNT 182 (226)
T ss_pred EEEEEEEEECCCCCEEEE---EEEEEEECCCEEEEEEEEEECHHH
Confidence 467799999999999997 656566677788888999998863
No 191
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=31.32 E-value=2e+02 Score=36.44 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=48.0
Q ss_pred EEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy6919 28 TVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF 98 (638)
Q Consensus 28 ~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~ 98 (638)
+++.+ .+|+|+|++.+.... .....++=+--+|+. =.|+-..|+..+.+++++.|+..+.|..
T Consensus 423 ~~a~d-~~G~i~af~s~~p~~------~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~ 485 (1094)
T PRK02983 423 VEAHD-ADGQVVALLSFVPWG------RRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNF 485 (1094)
T ss_pred EEEEC-CCCeEEEEEEEeeeC------CCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEech
Confidence 44544 479999999987521 112445556666775 7899999999999999999999999875
No 192
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=31.25 E-value=85 Score=32.41 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=34.5
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccCcccccC
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNGLIAPKQ 631 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~li~~k~ 631 (638)
.+.++|.+|-++|.|+|+ |+.+...-+|.-+-.+.|+|+|.-
T Consensus 144 tItv~V~~VlpNGnL~I~---GeK~v~vN~e~e~i~lsGvVRP~D 185 (230)
T PRK12701 144 SISVTVAKVLANGNMVVQ---GEKWVRINQGNEFVRLSGIVRPQD 185 (230)
T ss_pred EEEEEEEEECCCCCEEEE---EEEEEEECCCeEEEEEEEEECHHH
Confidence 477899999999999997 666666677888888999998863
No 193
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=30.95 E-value=87 Score=32.48 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=34.5
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccCcccccC
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNGLIAPKQ 631 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~li~~k~ 631 (638)
.+.++|.++.++|.|+|+ |+.+.-.-+|.-+-.+.|+|+|.-
T Consensus 151 tIta~V~~VLPNGNLvI~---G~k~v~vN~e~~~i~lsGvVRP~D 192 (236)
T PRK12696 151 TIAARVVRVLPGGLMQVE---GARETRVNDETQYIVVSGLVRPRD 192 (236)
T ss_pred EEEEEEEEECCCCCEEEE---EEEEEEECCCEEEEEEEEEECHHH
Confidence 477899999999999997 656566678888888999998853
No 194
>PRK06009 flgD flagellar basal body rod modification protein; Reviewed
Probab=30.52 E-value=3.7e+02 Score=25.69 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHH--HHHHH--hcCCcHHHHHH--HHHhhccCCCEEEEEECCccEEEEEEEeEC-CCCcEEEEecCC
Q psy6919 536 SPLLSYEQYFALVFN--HLEQL--MEGDFDEIYDL--YYKHWLHNNVNVTVVSERGEAQQVKIIGID-DFGFLNVRSEEG 608 (638)
Q Consensus 536 l~~i~r~~Lla~il~--~le~l--~~~g~~~~l~~--y~~~~~~~G~~V~v~~~~g~~~~G~i~GId-d~G~Llv~~~~G 608 (638)
+.+.+-.++++.+.. .+|.. .....+.+... .....-++||.|.+. +| .+.|++.+|. .+|...+..+||
T Consensus 52 l~P~D~tefiaQlAQfS~lEq~~~mn~~l~~l~~~~~~~qa~slIGk~V~~~--~~-~~~G~V~sV~~~~~~~~~~~~dg 128 (140)
T PRK06009 52 TDPMDATQYVSQLATFSQVEQSIQTNSKLDTLLASSSLTQAEGLIGRTVTSA--DG-SITGVVKSVTVYSDGVIATLEDG 128 (140)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEec--CC-cEEEEEEEEEEeCCceEEEEECC
Confidence 456777777776532 45544 12233333321 223455789999874 34 4799999985 345566666788
Q ss_pred eEEEEe
Q psy6919 609 YIFSVR 614 (638)
Q Consensus 609 ~~~~v~ 614 (638)
+.+.+.
T Consensus 129 ~~v~l~ 134 (140)
T PRK06009 129 KKVLLG 134 (140)
T ss_pred EEEEeC
Confidence 765553
No 195
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=30.35 E-value=2.6e+02 Score=29.33 Aligned_cols=67 Identities=13% Similarity=-0.022 Sum_probs=39.7
Q ss_pred CEEEEEEEECCCCeEEEEEEEEEeeccccccccceeeeEEEE-CCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy6919 24 DYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVV-DDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF 98 (638)
Q Consensus 24 ~~~~~Vaede~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V-~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~ 98 (638)
+..++++.+. +|+|+|++...... +..++..++.- +++ -=+|+-..|+..+.+.+++.|+..+.|..
T Consensus 179 ~~~~~~~~~~-dgki~af~~~~~~~------~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ 246 (299)
T PF09924_consen 179 GLRGFVARVA-DGKIVAFAIGSPLG------GRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGF 246 (299)
T ss_dssp T-EEEEEEE--TTEEEEEEEEEEEE-------TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE---
T ss_pred CceEEEEEEC-CCcEEEEEEEEEcc------CCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccc
Confidence 4566777652 79999998876432 12233333333 333 45899999999999999999999998775
No 196
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=29.97 E-value=1.5e+02 Score=25.90 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=30.7
Q ss_pred hccCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 571 WLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 571 ~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
++-.|++|.|...+|..+.|++.+.|..=.|++++
T Consensus 10 ~~~~~~~V~V~lr~~r~~~G~L~~fD~hmNlvL~d 44 (87)
T cd01720 10 AVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN 44 (87)
T ss_pred HHcCCCEEEEEEcCCCEEEEEEEEecCccEEEEcc
Confidence 44468999999888899999999999999999875
No 197
>PRK11625 Rho-binding antiterminator; Provisional
Probab=29.82 E-value=3e+02 Score=24.02 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=35.9
Q ss_pred HHHhhccCCCEEEEEECCccEEEEEEEeE-C--CCCcEEEEecCCeEEEEecCCe
Q psy6919 567 YYKHWLHNNVNVTVVSERGEAQQVKIIGI-D--DFGFLNVRSEEGYIFSVRPDGN 618 (638)
Q Consensus 567 y~~~~~~~G~~V~v~~~~g~~~~G~i~GI-d--d~G~Llv~~~~G~~~~v~sgev 618 (638)
|.+.+...+-+|++...+|+..+|++.++ + ..=+|+++.+ |..+.+.-|-+
T Consensus 15 yLElAC~~~~~l~l~l~dGe~~~g~A~D~~~~~k~EyL~l~~~-g~~~~iRLD~I 68 (84)
T PRK11625 15 NLELACQHHLMLTLELKDGEVLQAKASDLVSRKNVEYLVVEAA-GETRELRLDKI 68 (84)
T ss_pred HHHHHHhcCCeEEEEECCCCEEEEEEEeeecCCceEEEEEEcC-CCEEEEEeeeE
Confidence 44555557889999999999999999998 2 2346777654 55556655543
No 198
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=28.16 E-value=99 Score=32.04 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=35.0
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccCcccccC
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNGLIAPKQ 631 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~li~~k~ 631 (638)
.+.++|.+|-++|.|+|+ |+.+.-.-+|.-+-.+.|.|.|.-
T Consensus 149 tIaa~V~~VLPNGNLvI~---G~kev~vN~e~~~i~vsGvVRP~D 190 (234)
T PRK12788 149 SVAAIVVDVLPNGNLLIS---GSQEVRVNYEMRVLNVGGIVRPLD 190 (234)
T ss_pred EEEEEEEEEcCCCCEEEE---EEEEEEECCCEEEEEEEEEECHHH
Confidence 477899999999999997 666566678888889999998864
No 199
>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.
Probab=27.68 E-value=1.5e+02 Score=25.33 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=31.6
Q ss_pred HHhhccCCCEEEEEEC---Cc-cEEEEEEEeECCCCcEEEEecC---CeEEEEecCCe
Q psy6919 568 YKHWLHNNVNVTVVSE---RG-EAQQVKIIGIDDFGFLNVRSEE---GYIFSVRPDGN 618 (638)
Q Consensus 568 ~~~~~~~G~~V~v~~~---~g-~~~~G~i~GIdd~G~Llv~~~~---G~~~~v~sgev 618 (638)
+.+-.+.|+.|.+... +| +.+.|++.++++++- .+..+. ++...+.-+++
T Consensus 18 ~~~~r~~G~~v~v~~~~~~~~~~~~~G~L~~~~~~~v-~l~~~~~~~~~~~~i~~~~I 74 (83)
T cd01734 18 ADFERAVGKYVHVKLYQPIDGQKEFEGTLLGVDDDTV-TLEVDIKTRGKTVEIPLDKI 74 (83)
T ss_pred HHHHHhCCCEEEEEEEcccCCeEEEEEEEEeEeCCEE-EEEEecCCCCeEEEEEhHHe
Confidence 3344568999988653 33 468999999998754 444432 44555554444
No 200
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=27.67 E-value=1.3e+02 Score=31.20 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=31.0
Q ss_pred EEEEEEEeECCCCcEEEEecCCeEEEEecCCeEEEcccCccccc
Q psy6919 587 AQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGNTFDMLNGLIAPK 630 (638)
Q Consensus 587 ~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgevSfd~~~~li~~k 630 (638)
.+.++|.+|.++|.|+|+ |+.+.---+|.-+-.++|+|+|-
T Consensus 148 tIta~V~~VLpNGNL~I~---G~Kev~vN~~~e~i~vsGvVRP~ 188 (230)
T COG2063 148 TITATVVQVLPNGNLVIE---GEKEVRVNGEKEIIRVSGVVRPD 188 (230)
T ss_pred EEEEEEEEEcCCCCEEEE---EEEEEEECCceEEEEEeeeEccc
Confidence 478899999999999997 44434445666777788888874
No 201
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=27.60 E-value=2.4e+02 Score=25.70 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=31.8
Q ss_pred ccceeeeEEEECCCCcC-CcHHHHHHHHHHHHHHHcCCeE-EEEEe
Q psy6919 55 ALKGKIEEVVVDDTYRG-KELGKLLIAVLVKLAKHFQCYK-LTLDF 98 (638)
Q Consensus 55 ~~~~~I~~l~V~p~yRG-kGIGk~Lm~~l~e~Ar~~G~~~-I~L~~ 98 (638)
....+++-++|.+..|| .|++..+.+++.+ ...+ +...+
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~-----~fp~~L~Wrs 77 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLD-----GFPNELIWRS 77 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHH-----cCCCceEEEe
Confidence 56789999999999997 9999999998776 3444 66654
No 202
>PRK14346 lipoate-protein ligase B; Provisional
Probab=26.23 E-value=7.5e+02 Score=25.64 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=32.4
Q ss_pred eeEEEEEeeeeecCCcCCCccEEEEEEeeecCCCCCCCccccccc------cCCCC----CCCCHHHHHHHHHHHHHHH
Q psy6919 487 VKLGGIIVTSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFS------ANPSS----PLLSYEQYFALVFNHLEQL 555 (638)
Q Consensus 487 kKigGILvE~~~~~~~~~~~~~vVIGIGINvn~~~p~~~l~~l~~------~~tsl----~~i~r~~Lla~il~~le~l 555 (638)
+|||-|=+-.. .....=|+.|||+++-. ..+.+.. ..||+ ..++.+++...+..+|.+.
T Consensus 159 ~KIaAiGv~v~--------r~vT~HG~ALNv~~DL~--~F~~IvPCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~~~ 227 (230)
T PRK14346 159 GKIAALGIKVS--------RHCTYHGVALNVAMDLE--PFSRINPCGYAGLQTVDLSTIGVQTTWDEAASVLGQQLARY 227 (230)
T ss_pred ceEEEEeeEEe--------cceeecceeEEcCCChh--hhCcEECCCCCCCceeeHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 69998765532 11233599999997521 0111110 12333 2467777777777777653
No 203
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=25.56 E-value=1.4e+02 Score=28.92 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=36.7
Q ss_pred hhccCCCEEEEEECCccEEEEEEEeECCCCcEEEEecCCeEEEEec
Q psy6919 570 HWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGYIFSVRP 615 (638)
Q Consensus 570 ~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~s 615 (638)
.++-.|+.|+|...+|+.++|.-.|+|.. ..-++.++|....|.-
T Consensus 115 ka~qqg~sIrVyM~DgR~ieG~stGvnac-qVgl~~~~Gn~~qi~f 159 (165)
T PF03614_consen 115 KAHQQGKSIRVYMADGREIEGKSTGVNAC-QVGLILPNGNHMQIFF 159 (165)
T ss_pred HHHHCCCeEEEEEcCCcEEEeeecccceE-EEEEEcCCCCEEEEEe
Confidence 46778999999999999999999999984 5667778897666543
No 204
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=25.47 E-value=2.7e+02 Score=32.42 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=46.6
Q ss_pred CCCeEEEEEEEEEeeccccccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy6919 34 RTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF 98 (638)
Q Consensus 34 ~~gkIVG~~~l~~~~~~~~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~ 98 (638)
.+|+|+|++.+... .......|+-+--+|+.- +|+=..|+..++.++|+.|+.++.|..
T Consensus 400 ~~g~VvaFa~l~~~-----~~~~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgm 458 (538)
T COG2898 400 NEGEVVAFANLMPT-----GGKEGYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGM 458 (538)
T ss_pred CCCCeEEEEeeccc-----CCcceeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 47889999998642 223445566777777764 689999999999999999999998864
No 205
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=25.04 E-value=1.8e+02 Score=24.12 Aligned_cols=31 Identities=23% Similarity=0.041 Sum_probs=24.7
Q ss_pred EEEEEEeE---CCCC-cEEEEecCCeEEEEecCCe
Q psy6919 588 QQVKIIGI---DDFG-FLNVRSEEGYIFSVRPDGN 618 (638)
Q Consensus 588 ~~G~i~GI---dd~G-~Llv~~~~G~~~~v~sgev 618 (638)
..|+|.|. |-.| .++|+.+||....+..+|+
T Consensus 28 ~~g~I~~fKmtDG~giG~vv~~~ng~~~WFFedEi 62 (64)
T PF11061_consen 28 PIGTIKGFKMTDGSGIGVVVEFSNGSRTWFFEDEI 62 (64)
T ss_pred CcEEEEEEEEecCCcEEEEEEecCCceeEEchhhc
Confidence 46888886 6677 8899999998888777765
No 206
>PRK14633 hypothetical protein; Provisional
Probab=24.93 E-value=2.6e+02 Score=26.84 Aligned_cols=50 Identities=14% Similarity=0.017 Sum_probs=32.7
Q ss_pred HHhhccCCCEEEEEE----CCccEEEEEEEeECCCCcEEEEecCCeEEEEecCCe
Q psy6919 568 YKHWLHNNVNVTVVS----ERGEAQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGN 618 (638)
Q Consensus 568 ~~~~~~~G~~V~v~~----~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgev 618 (638)
+.+--+.|+.|.|.. ++++.++|++.+++++ .+.+...+|+...+.-+++
T Consensus 87 ~~f~r~~G~~v~V~~~~~~~~~~~~~G~L~~v~~~-~i~l~~~~~~~~~i~~~~I 140 (150)
T PRK14633 87 IQAQALVGFNVKAVTLAPVGSQTKFKGVLERVEGN-NVILNLEDGKEISFDFDEL 140 (150)
T ss_pred HHHHHhCCCeEEEEEecccCCcEEEEEEEEEEeCC-EEEEEEcCCcEEEEEhHHe
Confidence 344456899988865 3457899999999885 4445444565555544444
No 207
>PRK02001 hypothetical protein; Validated
Probab=24.92 E-value=2.5e+02 Score=27.17 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=28.0
Q ss_pred HHHhhccCCCEEEEEECCccEEEEEEEeECCCCcEE
Q psy6919 567 YYKHWLHNNVNVTVVSERGEAQQVKIIGIDDFGFLN 602 (638)
Q Consensus 567 y~~~~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Ll 602 (638)
-+.+--+.|+.|+|...+++.+.|++.++++++-.+
T Consensus 82 ~~~f~r~~G~~v~V~l~~~~~~~G~L~~~~~~~i~l 117 (152)
T PRK02001 82 PRQYKKNIGRELEVLTKNGKKIEGELKSADENDITL 117 (152)
T ss_pred HHHHHHhCCCEEEEEECCCCEEEEEEEEEeCCEEEE
Confidence 344445689999998877788999999999876443
No 208
>PRK14636 hypothetical protein; Provisional
Probab=24.45 E-value=2.2e+02 Score=28.20 Aligned_cols=50 Identities=6% Similarity=-0.061 Sum_probs=32.3
Q ss_pred HHhhccCCCEEEEEEC----CccEEEEEEEeECCCCcEEEEecCCeEEEEecCCe
Q psy6919 568 YKHWLHNNVNVTVVSE----RGEAQQVKIIGIDDFGFLNVRSEEGYIFSVRPDGN 618 (638)
Q Consensus 568 ~~~~~~~G~~V~v~~~----~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v~sgev 618 (638)
+.+--+.|+.|+|... +.+.+.|++.++++++ +.+...+|....+.-+++
T Consensus 91 ~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~v~~~~-v~l~~~~~~~~~i~~~~I 144 (176)
T PRK14636 91 KDFADWAGHEARIALSEPLDGRKQFRGELKGIDGDT-VTIADNKAGEVILPFAAI 144 (176)
T ss_pred HHHHHhCCCeEEEEEecccCCeEEEEEEEEEEeCCE-EEEEEcCCcEEEEEhHHc
Confidence 3444568999998753 3357899999998865 555544454555544443
No 209
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=22.28 E-value=1.4e+02 Score=27.95 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHhhccCCCEEEEEE----CCccEEEEEEEeECCCCcEEEEecCC
Q psy6919 559 DFDEIYDLYYKHWLHNNVNVTVVS----ERGEAQQVKIIGIDDFGFLNVRSEEG 608 (638)
Q Consensus 559 g~~~~l~~y~~~~~~~G~~V~v~~----~~g~~~~G~i~GIdd~G~Llv~~~~G 608 (638)
|.+.-+...+.+-.+.|+.|.|.. .+.+.+.|++.+++++ .+.++..++
T Consensus 71 G~~r~L~~~~~~~~~iG~~v~v~~~~~~~~~~~~~G~L~~~~~~-~i~l~~~~~ 123 (141)
T PF02576_consen 71 GIDRPLKSPRDFERFIGRKVKVKLKQPVNGRKEFEGKLLEVDED-EITLEVEGK 123 (141)
T ss_dssp SSSS--SSHHHHHHH-SEEEEEE-SS-SSS-SEEEEEEEEEETT-EEEEEEE-S
T ss_pred CCCCcCCCHHHHHHhcCCeEEEEEeccCCCcEEEEEEEEEEeCC-EEEEEECCc
Confidence 444333334555567899999986 2335689999999985 455555444
No 210
>PF11095 Gemin7: Gem-associated protein 7 (Gemin7); InterPro: IPR020338 Gem-associated protein 7 (Gemin7) is a component of the survival of motor neuron complex, which functions in the assembly of spliceosomal small nuclear ribonucleoproteins. Gemin7 interacts with several Sm proteins of spliceosomal small nuclear ribonucleoproteins, especially SmE []. Gem-associated protein 7 is found in the nucleoplasm, in nuclear "gems" (Gemini of Cajal bodies), and in the cytoplasm. Three transcript variants encoding the same protein have been found for this gene [].; GO: 0032797 SMN complex; PDB: 1Y96_D.
Probab=22.16 E-value=3.9e+02 Score=23.14 Aligned_cols=56 Identities=7% Similarity=-0.105 Sum_probs=35.5
Q ss_pred HHHHHHHh-hccCCCEEEEEECCccEEEEEEEeECCCCcEEEE----ecCCeE--EEEecCCe
Q psy6919 563 IYDLYYKH-WLHNNVNVTVVSERGEAQQVKIIGIDDFGFLNVR----SEEGYI--FSVRPDGN 618 (638)
Q Consensus 563 ~l~~y~~~-~~~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~----~~~G~~--~~v~sgev 618 (638)
+.++|-+. ....|++|.+..-++....|++.+.|.++.-..- ++=|.+ =.+...++
T Consensus 11 LRerfLr~l~~~~gk~v~f~l~e~t~V~a~F~a~d~~~~~f~Vs~L~TPlGv~~eAlLR~~DV 73 (80)
T PF11095_consen 11 LRERFLRSLLAMVGKPVEFTLHENTTVSARFGACDIDVSNFQVSNLQTPLGVQPEALLRCSDV 73 (80)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEGGG-EEEEEEEEE-TTS-EEEEEEEETTTTEEEEEEEEGGGE
T ss_pred HHHHHHHHHHHhcCCceEEEEeCCeEEEEEEEEecCchheEEhhhcCCCcccChhheeecCCE
Confidence 55566444 3567999999887777899999999988766532 355643 23344444
No 211
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=21.99 E-value=2.2e+02 Score=27.96 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=31.2
Q ss_pred ccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy6919 53 ECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDF 98 (638)
Q Consensus 53 ~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~G~~~I~L~~ 98 (638)
......+++-++|.|..||.|++..+.+.+.+- ...+...+
T Consensus 84 ~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d-----~p~L~Wrs 124 (170)
T PF04768_consen 84 SNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKD-----FPKLFWRS 124 (170)
T ss_dssp TCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH------SSEEEEE
T ss_pred CCCCCeEEEEEEecchhhhcCHHHHHHHHHHHh-----ccceEEEe
Confidence 345689999999999999999999999997433 34466665
No 212
>cd01716 Hfq Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.
Probab=21.52 E-value=4.2e+02 Score=21.75 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=28.6
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEecCCeEEEE
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRSEEGYIFSV 613 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~~~G~~~~v 613 (638)
....+|++..-+|....|+|.|.|.. .++++. +|+..-+
T Consensus 9 ~~~~~Vtv~L~NG~~l~G~I~~fD~f-tVll~~-~g~qqLI 47 (61)
T cd01716 9 KEKIPVTIYLVNGVQLKGQIESFDNF-TVLLES-DGKQQLV 47 (61)
T ss_pred HcCCcEEEEEeCCcEEEEEEEEEcce-EEEEEE-CCcEEEE
Confidence 35678999888999999999999986 455554 4544333
No 213
>PRK14631 hypothetical protein; Provisional
Probab=21.37 E-value=3e+02 Score=27.20 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=33.2
Q ss_pred HHHhhccCCCEEEEEEC----CccEEEEEEEeEC-CCCcEEEEecCCeEEEEecCC
Q psy6919 567 YYKHWLHNNVNVTVVSE----RGEAQQVKIIGID-DFGFLNVRSEEGYIFSVRPDG 617 (638)
Q Consensus 567 y~~~~~~~G~~V~v~~~----~g~~~~G~i~GId-d~G~Llv~~~~G~~~~v~sge 617 (638)
-+.+--+.|+.|.|... +.+.++|++.+++ +++.+.+..++++...+.-++
T Consensus 109 ~~df~r~~G~~V~V~l~~~~~~~k~~~G~L~~v~~~~~~v~l~~~~~~~~~i~~~~ 164 (174)
T PRK14631 109 LEQLQGYIGQQVALRLIAAVENRRKFQAKLLAVDLENEEIQVEVEGKHVLDIDSNN 164 (174)
T ss_pred HHHHHHhCCCeEEEEEecccCCceEEEEEEEEeecCCCEEEEEEcCCcEEEEEhHH
Confidence 34444568999998762 3467999999998 235666665556545554433
No 214
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=21.30 E-value=3.9e+02 Score=29.01 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=51.8
Q ss_pred HHHHHHhcCCC---EEEEEEEECCCCeEEEEEEEEEeeccc-cccccceeeeEEEECCCCcCCcHHHHHHHHHHHHHHHc
Q psy6919 14 ERFHRMKASQD---YLVTVIEDTRTKQVIGTGSLILEQKFI-HECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHF 89 (638)
Q Consensus 14 ~~f~~~~~~~~---~~~~Vaede~~gkIVG~~~l~~~~~~~-~~~~~~~~I~~l~V~p~yRGkGIGk~Lm~~l~e~Ar~~ 89 (638)
+.++++...+. .+++++.-....++|||+......--. ....+.+.|.-++||.+.|+|-+.--|++++-+.|...
T Consensus 118 EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~ 197 (451)
T COG5092 118 EFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVD 197 (451)
T ss_pred HHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEcccccccceEEEEEEehhhhhCccchHHHHHHHHhhhhh
Confidence 44556665553 223333322245999998754321111 11234677888999999999999999999999888776
Q ss_pred CCeE
Q psy6919 90 QCYK 93 (638)
Q Consensus 90 G~~~ 93 (638)
|+-+
T Consensus 198 ~iw~ 201 (451)
T COG5092 198 GIWR 201 (451)
T ss_pred hhHH
Confidence 6543
No 215
>KOG1784|consensus
Probab=20.92 E-value=1e+02 Score=27.16 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=29.9
Q ss_pred cCCCEEEEEECCccEEEEEEEeECCCCcEEEEe
Q psy6919 573 HNNVNVTVVSERGEAQQVKIIGIDDFGFLNVRS 605 (638)
Q Consensus 573 ~~G~~V~v~~~~g~~~~G~i~GIdd~G~Llv~~ 605 (638)
+++|+|.+...||+.+-|..+|.|..=.|++.+
T Consensus 8 y~n~~V~vIt~DGr~ivgsLkGFDq~tNlii~~ 40 (96)
T KOG1784|consen 8 YMNQRVSVITNDGRVIVGSLKGFDQTTNLIIDE 40 (96)
T ss_pred HhhceEEEEecCCeEEEEEeccccccceeeehh
Confidence 468899999999999999999999999999965
No 216
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=20.63 E-value=3.3e+02 Score=19.98 Aligned_cols=40 Identities=20% Similarity=0.028 Sum_probs=28.2
Q ss_pred CCEEEEEEC-CccEEEEEEEeECCCCcEEEEecC-CeEEEEe
Q psy6919 575 NVNVTVVSE-RGEAQQVKIIGIDDFGFLNVRSEE-GYIFSVR 614 (638)
Q Consensus 575 G~~V~v~~~-~g~~~~G~i~GIdd~G~Llv~~~~-G~~~~v~ 614 (638)
|+.+..... +|.=+.|+|.+++.++...|.-.| |....+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~ 42 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVP 42 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEe
Confidence 344444433 467899999999988888888766 7766554
No 217
>KOG1486|consensus
Probab=20.21 E-value=1.5e+02 Score=31.44 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=19.0
Q ss_pred cee-eecCcEEEeCceeEEEEEeeeee
Q psy6919 473 LGI-KWPNDLYVNGNVKLGGIIVTSSI 498 (638)
Q Consensus 473 v~I-KWPNDIy~~~~kKigGILvE~~~ 498 (638)
+++ |-|-+||+.. +|-|||-.+.+.
T Consensus 168 iRLNk~~Pniy~k~-kk~gGi~f~~T~ 193 (364)
T KOG1486|consen 168 IRLNKRKPNIYFKK-KKTGGISFNTTV 193 (364)
T ss_pred eeccCCCCCeEEEe-eccCCeEEeeee
Confidence 444 5666799997 899999877654
Done!