RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6919
(638 letters)
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase
catalytic domain {Archaeon Pyrococcus horikoshii [TaxId:
53953]}
Length = 188
Score = 78.3 bits (192), Expect = 2e-17
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 22/202 (10%)
Query: 375 LNTKKLGQLVIYSGVMSSSHNVLDGPTLLHGLTVIPRQQTQGTGRSNNIWLSPPGCAMFS 434
L T +G+ VIY ++S++ L G ++ +QT G G N W SP G S
Sbjct: 4 LKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTMGHGALNRKWESPEGGLWLS 63
Query: 435 MQLHIDLKSQLGKHLPLIQHIVAISIVLAVKSFNQDIDLGIKWPNDLYVNGNVKLGGIIV 494
+ L + + + + + + + ID IKWPND+ VN G
Sbjct: 64 IVLSPKVPQKDLPKIVFLGAVGVVETL-----KEFSIDGRIKWPNDVLVNYKAIAG---- 114
Query: 495 TSSILSTFESQMAVCNIGVGMNLDNSQPTTCLNSIFSANPSSPLLSYEQYFALVFNHLEQ 554
+L + V IG+ +N T + + + F + +L++
Sbjct: 115 ---VLVEGKGDKIVLGIGLNVNNKVPNGATSMKLELGSE-----VPLLSVFRSLITNLDR 166
Query: 555 L----MEGDFDEIYDLYYKHWL 572
L ++ D I +L + +
Sbjct: 167 LYLNFLKNPMD-ILNLVRDNMI 187
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme
synthetase, catalytic (central) domain {Escherichia coli
[TaxId: 562]}
Length = 207
Score = 57.7 bits (138), Expect = 5e-10
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 9/170 (5%)
Query: 404 HGLTVIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPLIQHIVAISIVLA 463
G I Q G GR W SP G ++ + G + +V ++
Sbjct: 40 SGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRL---EQGPAAAIGLSLVIGIVMAE 96
Query: 464 VKSFNQDIDLGIKWPNDLYVNGNVKLGGIIVTSSILSTFESQMAVCNIGVGMNLDNSQPT 523
V + +KWPNDLY+ G ++ + + G+ M + + +
Sbjct: 97 VLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIV--IGAGINMAMRRVEES 154
Query: 524 TCLNSIFSANPSSPLLSYEQYFALVFNHLE----QLMEGDFDEIYDLYYK 569
+ + L A++ L + + K
Sbjct: 155 VVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEK 204
>d1z4ea1 d.108.1.1 (A:4-153) Transcriptional regulator BH1968
{Bacillus halodurans [TaxId: 86665]}
Length = 150
Score = 38.8 bits (89), Expect = 4e-04
Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 11 HFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALKGKIEEVVVDDTYR 70
+ F +K ++ + V + ++++G + ++ + + IE V R
Sbjct: 38 SYVRAFKEIKKDKNNELIVACNG--EEIVGMLQVTFTPYLTYQGSWRATIEGVRTHSAAR 95
Query: 71 GKELGKLLIAVLVKLAKHFQCYKLTLD 97
G+ +G L+ ++ AK C+ + L
Sbjct: 96 GQGIGSQLVCWAIERAKERGCHLIQLT 122
>d2jdca1 d.108.1.1 (A:2-146) Probable acetyltransferase YitI
{Bacillus licheniformis [TaxId: 1402]}
Length = 145
Score = 37.4 bits (86), Expect = 0.001
Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 37 QVIGTGSLILEQKFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTL 96
++I S + + + ++ + + YR ++ G LI ++ + L
Sbjct: 48 KLISIASFHQAEHSELQGQKQYQLRGMATLEGYREQKAGSSLIKHAEEILRKRGADLLWC 107
Query: 97 DF-----SFY 101
+ +Y
Sbjct: 108 NARTSASGYY 117
>d1m4ia_ d.108.1.1 (A:) Aminoglycoside 2'-N-acetyltransferase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 181
Score = 34.4 bits (78), Expect = 0.023
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 37 QVIGTGSLILEQKFIHECALK-GKIEEVVVDDTYRGKELGKLLIAVLVKLAK 87
+I ++I + AL+ G +E V V +RG+ L L+ + ++ +
Sbjct: 57 AIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMR 108
>d2hv2a2 d.108.1.10 (A:2-286) Hypothetical protein EF1021
{Enterococcus faecalis [TaxId: 1351]}
Length = 285
Score = 33.7 bits (76), Expect = 0.052
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 5 PTSNVFHFAERFHRMKASQDYLVTVIEDTRTKQVIGTGSLILEQKFIHECALK-GKIEEV 63
ERF ++ + +I++ Q+ Q H I V
Sbjct: 25 NQEPTAERQERFEKLLSHTQSYGFLIDE----QLTSQVMATPFQVNFHGVRYPMAGIGYV 80
Query: 64 VVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTL 96
YRG+ ++ ++ + L
Sbjct: 81 ASYPEYRGEGGISAIMKEMLADLAKQKVALSYL 113
>d1p0ha_ d.108.1.1 (A:) Mycothiol synthase MshD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 308
Score = 29.3 bits (64), Expect = 1.3
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 49 KFIHECALKGKIEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLDFSFYTCWKLSY 108
K + G++ + VD + + LG++L ++ + + TLD
Sbjct: 222 KVHPDHPGLGEVYVLGVDPAAQRRGLGQMLTSIGIVSLARRLGGRKTLD-----PAVEPA 276
Query: 109 IFLMV 113
+ L V
Sbjct: 277 VLLYV 281
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional
repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.7 bits (59), Expect = 2.0
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 397 LDGPTLLHGLT--VIPRQQTQGTGRSNNIWLSPPGCAMFSMQLHIDLKSQLGKHLPL 451
LD P L G + R+ GRS+ + SP G + S +L LG L
Sbjct: 6 LDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKV---ELTRYLGPACDL 59
>d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945
{Enterococcus faecalis [TaxId: 1351]}
Length = 189
Score = 28.1 bits (61), Expect = 2.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 60 IEEVVVDDTYRGKELGKLLIAVLVKLAKHFQCYKLTLD 97
++ + VD+ +RG +G L+ L ++AK L L+
Sbjct: 114 LDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLN 151
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli
[TaxId: 562]}
Length = 213
Score = 27.8 bits (62), Expect = 3.1
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 516 NLDNSQPTTCLNSIFSANPSSPLLSY---EQYFALVFNHLEQLMEGDFDEIYD 565
+ D LNSI NPSS L + E + L ++ + +
Sbjct: 30 HCDADALHVSLNSIIDMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLN 82
>d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha
chain, AstA {Pseudomonas aeruginosa [TaxId: 287]}
Length = 338
Score = 27.7 bits (62), Expect = 4.8
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 31/89 (34%)
Query: 20 KASQDYLVTVIEDTRTKQVIGTGSLI----LEQKFIH-----------ECALKGKIE--- 61
+ Y V+ED+ + +++G +++ + F ++ KI
Sbjct: 54 NGEESYFF-VLEDSASGELVGCSAIVASAGFSEPFYSFRNETFVHASRSLSIHNKIHVLS 112
Query: 62 ---------EV---VVDDTYRGKELGKLL 78
+ V +L
Sbjct: 113 LCHDLTGNSLLTSFYVQRDLVQSVYAELN 141
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.387
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,268,954
Number of extensions: 104364
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 14
Length of query: 638
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 547
Effective length of database: 1,158,166
Effective search space: 633516802
Effective search space used: 633516802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)