BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6921
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HPA|A Chain A, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|B Chain B, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|C Chain C, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|D Chain D, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|1CVI|A Chain A, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|B Chain B, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|C Chain C, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|D Chain D, Crystal Structure Of Human Prostatic Acid Phosphatase
Length = 342
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Query: 26 IRAVARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRYNGF 85
+ V RHGDR + F DP W P G GQL G + + LG+ +R RY F
Sbjct: 6 VTLVFRHGDR--SPIDTFPTDPIKESS--W-PQGFGQLTQLGMEQHYELGEYIRKRYRKF 60
Query: 86 LKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQ 145
L E Y + + S D+DR LMSA L+PP GV+IWN + +QPIP+ + S+
Sbjct: 61 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPIL--LWQPIPVHTVPLSE 118
Query: 146 D-LIFNDGKSCPPY-EKELNKVLSREMADINAKYKDIYEYVAYHTGRNITTLREV-NEVY 202
D L++ ++CP + E E + S E YKD + +G + L + ++VY
Sbjct: 119 DQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVY 178
Query: 203 QTLRIEFENGRQMPEWTKQ 221
L E + +P W +
Sbjct: 179 DPLYCESVHNFTLPSWATE 197
>pdb|1ND5|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
Length = 354
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 100/199 (50%), Gaps = 10/199 (5%)
Query: 26 IRAVARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRYNGF 85
+ V RHGDR + F DP ++ W P G GQL G + + LG+ +R RY F
Sbjct: 6 VTLVFRHGDR--SPIDTFPTDPI--KESSW-PQGFGQLTQLGMEQHYELGEYIRKRYRKF 60
Query: 86 LKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQ 145
L E Y + + S D+DR LMSA L+PP GV+IWN + +QPIP+ + S+
Sbjct: 61 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPIL--LWQPIPVHTVPLSE 118
Query: 146 D-LIFNDGKSCPPYEKELNKVL-SREMADINAKYKDIYEYVAYHTGRNITTLREV-NEVY 202
D L++ ++CP +++ ++ L S E YKD + +G + L + ++VY
Sbjct: 119 DQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVY 178
Query: 203 QTLRIEFENGRQMPEWTKQ 221
L E + +P W +
Sbjct: 179 DPLYCESVHNFTLPSWATE 197
>pdb|1RPA|A Chain A, Three-Dimensional Structure Of Rat Acid Phosphatase In
Complex With L(+) Tartrate
pdb|1RPT|A Chain A, Crystal Structures Of Rat Acid Phosphatase Complexed With
The Transitions State Analogs Vanadate And Molybdate:
Implications For The Reaction Mechanism
Length = 342
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Query: 26 IRAVARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRYNGF 85
+ V RHGDR E F NDP ++ W P G GQL G + + LG +R RY F
Sbjct: 6 VTLVFRHGDR--GPIETFPNDPI--KESSW-PQGFGQLTKWGMGQHYELGSYIRRRYGRF 60
Query: 86 LKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQ 145
L Y + + S D+DR LMSA L+PP G +IWN + +QPIP+ + S+
Sbjct: 61 LNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGNSIWNPRL--LWQPIPVHTVSLSE 118
Query: 146 D-LIFNDGKSCPPYEKELNKVL-SREMADINAKYKDIYEYVAYHTGRNITTLREV-NEVY 202
D L++ + CP +++ ++ L S E YK + + +G L E+ + +Y
Sbjct: 119 DRLLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLY 178
Query: 203 QTLRIEFENGRQMPEWTKQ 221
L E + +P W +
Sbjct: 179 DPLYCESVHNFTLPTWATE 197
>pdb|3IT3|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
pdb|3IT3|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
Length = 342
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 98/246 (39%), Gaps = 45/246 (18%)
Query: 26 IRAVARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRYN-- 83
+ + RHGDR + N + E P G Q N LG LR RY
Sbjct: 11 VSMITRHGDRAPFANIENANYSWGTELSELTPIGMNQEYN--------LGLQLRKRYIDK 62
Query: 84 -GFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDN---VGKFFQPIPIK 139
G L E Y +I S +R ++SAQ + GLYP + D + FQPIPI
Sbjct: 63 FGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKDRFQPIPIM 122
Query: 140 SFDSSQDLIFNDGKSCPPYEKELNKVL-------------SREMADINAKYKDIYEYVAY 186
+ + LI PYE+ L VL ++E A AK++ I
Sbjct: 123 TLSADSRLI------QFPYEQYL-AVLKKYVYNSPEWQNKTKEAAPNFAKWQQIL----- 170
Query: 187 HTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALA--GLYNQVIFYNDKM 244
G I+ L +V V L + +G+ +P+ Q ++ AL GL Q F + K+
Sbjct: 171 --GNRISGLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQ--FKSQKV 226
Query: 245 KRIKAG 250
I G
Sbjct: 227 SYIMGG 232
>pdb|3IT0|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT0|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT1|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT1|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT2|A Chain A, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
pdb|3IT2|B Chain B, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
Length = 342
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 98/246 (39%), Gaps = 45/246 (18%)
Query: 26 IRAVARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRYN-- 83
+ + RHGDR + N + E P G Q N LG LR RY
Sbjct: 11 VSMITRHGDRAPFANIENANYSWGTELSELTPIGMNQEYN--------LGLQLRKRYIDK 62
Query: 84 -GFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDN---VGKFFQPIPIK 139
G L E Y +I S +R ++SAQ + GLYP + D + FQPIPI
Sbjct: 63 FGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKDRFQPIPIM 122
Query: 140 SFDSSQDLIFNDGKSCPPYEKELNKVL-------------SREMADINAKYKDIYEYVAY 186
+ + LI PYE+ L VL ++E A AK++ I
Sbjct: 123 TLSADSRLI------QFPYEQYL-AVLKKYVYNSPEWQNKTKEAAPNFAKWQQIL----- 170
Query: 187 HTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALA--GLYNQVIFYNDKM 244
G I+ L +V V L + +G+ +P+ Q ++ AL GL Q F + K+
Sbjct: 171 --GNRISGLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQ--FKSQKV 226
Query: 245 KRIKAG 250
I G
Sbjct: 227 SYIMGG 232
>pdb|4E3W|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Cryoprotected With Proline
pdb|4E3W|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Cryoprotected With Proline
Length = 342
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 98/246 (39%), Gaps = 45/246 (18%)
Query: 26 IRAVARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRYN-- 83
+ + R+GDR + N + E P G Q N LG LR RY
Sbjct: 11 VSMITRNGDRAPFANIENANYSWGTELSELTPIGMNQEYN--------LGLQLRKRYIDK 62
Query: 84 -GFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDN---VGKFFQPIPIK 139
G L E Y +I S +R ++SAQ + GLYP + D + FQPIPI
Sbjct: 63 FGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKDRFQPIPIM 122
Query: 140 SFDSSQDLIFNDGKSCPPYEKELNKVL-------------SREMADINAKYKDIYEYVAY 186
+ + LI PYE+ L VL ++E A AK++ I
Sbjct: 123 TLSADSRLI------QFPYEQYL-AVLKKYVYNSPEWQNKTKEAAPNFAKWQQIL----- 170
Query: 187 HTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALA--GLYNQVIFYNDKM 244
G I+ L +V V L + +G+ +P+ Q ++ AL GL Q F + K+
Sbjct: 171 --GNRISGLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQ--FKSQKV 226
Query: 245 KRIKAG 250
I G
Sbjct: 227 SYIMGG 232
>pdb|3OM7|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
Length = 456
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 8 NTPVCLAYCWDKKGRLGPIRAVARHGDRYKDKDEFFENDPFM-NEDPFWMPHGHGQLRNK 66
+T V L Y KK I + G +KD D+F NDP + N+ W G G L
Sbjct: 99 DTSVYLFY---KKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEW--SGSGTLTKD 153
Query: 67 GKYRMHY 73
GK R+ Y
Sbjct: 154 GKVRLFY 160
>pdb|3OM4|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
Length = 456
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 8 NTPVCLAYCWDKKGRLGPIRAVARHGDRYKDKDEFFENDPFM-NEDPFWMPHGHGQLRNK 66
+T V L Y KK I + G +KD D+F NDP + N+ W G G L
Sbjct: 99 DTSVYLFY---KKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEW--SGSGTLTKD 153
Query: 67 GKYRMHY 73
GK R+ Y
Sbjct: 154 GKVRLFY 160
>pdb|3OM6|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
Length = 456
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 8 NTPVCLAYCWDKKGRLGPIRAVARHGDRYKDKDEFFENDPFM-NEDPFWMPHGHGQLRNK 66
+T V L Y KK I + G +KD D+F NDP + N+ W G G L
Sbjct: 99 DTSVYLFY---KKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEW--SGSGTLTKD 153
Query: 67 GKYRMHY 73
GK R+ Y
Sbjct: 154 GKVRLFY 160
>pdb|3OM5|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
Length = 456
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 8 NTPVCLAYCWDKKGRLGPIRAVARHGDRYKDKDEFFENDPFM-NEDPFWMPHGHGQLRNK 66
+T V L Y KK I + G +KD D+F NDP + N+ W G G L
Sbjct: 99 DTSVYLFY---KKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEW--SGSGTLTKD 153
Query: 67 GKYRMHY 73
GK R+ Y
Sbjct: 154 GKVRLFY 160
>pdb|3OM2|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
D257a
Length = 456
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 8 NTPVCLAYCWDKKGRLGPIRAVARHGDRYKDKDEFFENDPFM-NEDPFWMPHGHGQLRNK 66
+T V L Y KK I + G +KD D+F NDP + N+ W G G L
Sbjct: 99 DTSVYLFY---KKAGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEW--SGSGTLTKD 153
Query: 67 GKYRMHY 73
GK R+ Y
Sbjct: 154 GKVRLFY 160
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 128 NVGKFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYVAYH 187
NV + + ++ + D++ K+ P ++E+N+ +RE+AD KY Y +
Sbjct: 125 NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD---KYGIPYFETSAA 181
Query: 188 TGRNI 192
TG+N+
Sbjct: 182 TGQNV 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,638,712
Number of Sequences: 62578
Number of extensions: 393378
Number of successful extensions: 864
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 855
Number of HSP's gapped (non-prelim): 16
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)