RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6921
(256 letters)
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 152 bits (385), Expect = 1e-44
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 29 VARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRYNGFLKE 88
V RHGDR + F DP ++ W P G GQL G + + LG+ +R RY FL E
Sbjct: 9 VFRHGDRSPI--DTFPTDPI--KESSW-PQGFGQLTQLGMEQHYELGEYIRKRYRKFLNE 63
Query: 89 EYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQD-L 147
Y + + S D+DR LMSA L+PP GV+IWN + +QPIP+ + S+D L
Sbjct: 64 SYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILL--WQPIPVHTVPLSEDQL 121
Query: 148 IFNDGKSCPPYEKELNKVL-SREMADINAKYKDIYEYVAYHTGRNITTLREV-NEVYQTL 205
++ ++CP +++ ++ L S E YKD + +G + L + ++VY L
Sbjct: 122 LYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPL 181
Query: 206 RIEFENGRQMPEWTKQVFPSKLKALAGLYNQVIF---YNDKMKRIKAGTY 252
E + +P W + +KL+ L+ L ++ + R++ G
Sbjct: 182 YCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVL 231
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella
tularensis subsp} PDB: 2glc_A 2glb_A 2gla_A 3it0_A*
3it1_A* 3it2_A 2p36_A*
Length = 342
Score = 146 bits (369), Expect = 2e-42
Identities = 60/232 (25%), Positives = 88/232 (37%), Gaps = 19/232 (8%)
Query: 29 VARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRY---NGF 85
+ RHGDR F N N + W +L G + + LG LR RY G
Sbjct: 14 ITRHGDRA-----PFANIE--NANYSW-GTELSELTPIGMNQEYNLGLQLRKRYIDKFGL 65
Query: 86 LKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKF---FQPIPIKSFD 142
L E Y +I S +R ++SAQ + GLYP + D FQPIPI +
Sbjct: 66 LPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKDRFQPIPIMTLS 125
Query: 143 SSQDLIFNDGKSCPPYEKELNKVL--SREMADINAKYKDIYEYVAYHTGRNITTLREVNE 200
+ LI Y L K + S E + + + G I+ L +V
Sbjct: 126 ADSRLIQF---PYEQYLAVLKKYVYNSPEWQNKTKEAAPNFAKWQQILGNRISGLNDVIT 182
Query: 201 VYQTLRIEFENGRQMPEWTKQVFPSKLKALAGLYNQVIFYNDKMKRIKAGTY 252
V L + +G+ +P+ Q ++ AL F + K+ I G
Sbjct: 183 VGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQFKSQKVSYIMGGKL 234
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
1dkm_A 1dkn_A 1dko_A 1dkl_A
Length = 410
Score = 105 bits (263), Expect = 1e-26
Identities = 41/261 (15%), Positives = 77/261 (29%), Gaps = 40/261 (15%)
Query: 29 VARHGDRY--KDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRY--NG 84
V+R G R K + P P W P G L +G + YLG R R +G
Sbjct: 14 VSRAGVRAPTKATQLMQDVTPDAW--PTW-PVKLGWLTPRGGELIAYLGHYQRQRLVADG 70
Query: 85 FLKEEYYY--GNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGK----FFQPIPI 138
L ++ G + + +R + + + GL P + + F P+
Sbjct: 71 LLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQTDTSSPDPLFNPLKT 130
Query: 139 KSFDSSQDL------------IFNDGKSCPPYEKELNKVL---------SREMADINAKY 177
I + +EL +VL RE D +
Sbjct: 131 GVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSL 190
Query: 178 KDIYEYVAYHTGRNITT---LREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALAG-- 232
+ N++ + + + + ++ G P W + + L
Sbjct: 191 TQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLH 250
Query: 233 -LYNQVIFYNDKMKRIKAGTY 252
++ ++ R +A
Sbjct: 251 NAQFYLLQRTPEVARSRATPL 271
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 104 bits (260), Expect = 4e-26
Identities = 37/246 (15%), Positives = 73/246 (29%), Gaps = 23/246 (9%)
Query: 29 VARHGDRYKDKDEFFENDPFMNED-PFWMPHGHGQLRNKGKYRMHYLGQSLRLRY--NGF 85
++RHG R + W G+L G + G+ Y G
Sbjct: 22 LSRHGIRPPTAGNREAIEAATGRPWTEW-TTHDGELTGHGYAAVVNKGREEGQHYRQLGL 80
Query: 86 LKEEYY-YGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWN--DNVGKFFQPIPIKSF- 141
L+ +I + + R +AQ + G +P GV I + FQ +
Sbjct: 81 LQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYANGDADPLFQTDKFAATQ 140
Query: 142 ---DSSQDLIFNDGKSCPPYEKELNKVLSR--EMADINAKYKDIYEY-----VAYHTGRN 191
+ + L + + K I++ +
Sbjct: 141 TDPARQLAAVKEKAGDLAQRRQALAPTIQLLKQAVCQADKPCPIFDTPWRVEQSKSGKTT 200
Query: 192 ITTLREVNEVYQTLRIEFENGRQMPE--WTKQVFPSKLKALAGLYNQ---VIFYNDKMKR 246
I+ L + + +TLR+ + + + W K S++ AL L + + +
Sbjct: 201 ISGLSVMANMVETLRLGWSENLPLSQLAWGKIAQASQITALLPLLTENYDLSNDVLYTAQ 260
Query: 247 IKAGTY 252
+
Sbjct: 261 KRGSVL 266
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase,
phytate binding site, hydrolase; HET: IHP; 1.88A
{Enterobacter cloacae} PDB: 1nt4_A*
Length = 398
Score = 102 bits (255), Expect = 2e-25
Identities = 35/250 (14%), Positives = 82/250 (32%), Gaps = 29/250 (11%)
Query: 29 VARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRY--NGFL 86
++R R + + + GQL KG Y+G +R G +
Sbjct: 13 MSRANLRAPLANNGSVLEQSTPKQWPEWEVPGGQLTTKGGVLEVYMGHYMREWLAQQGMV 72
Query: 87 KEEYYY--GNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWN-DNVGKF---FQPIPIKS 140
K ++ Y+ + R + +AQ G +P V + + + +G F P+ +
Sbjct: 73 KTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCDVPVHHQEKMGTMDPTFNPVITDN 132
Query: 141 FDSSQDLIFNDGKSCP------PYEKELNKVL---------SREMADINAKYKDIYEYVA 185
++ ++ K L ++ +++ + A KD +
Sbjct: 133 SPEFREKALKAMETERQKMQLTESYKLLEQMTNYADSPSCKEKKVCSL-ADAKDTFSADY 191
Query: 186 YHTGRNITTLREVNEVYQTLRIEFENGRQMPE--WTKQVFPSKLKALAG---LYNQVIFY 240
L+ N + +++ G + W + + + L+ Y +F
Sbjct: 192 EKEPGVSGPLKVGNSLVDAFTLQYYEGFPADQVAWGEIKTDQQWRVLSKLKNGYQDSLFT 251
Query: 241 NDKMKRIKAG 250
+ ++ + A
Sbjct: 252 STEVAQNVAK 261
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate
phosphohydrolase, 37288-11-2, MYO-inositol hexakis
sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger}
PDB: 3k4p_A* 1ihp_A
Length = 444
Score = 76.1 bits (186), Expect = 4e-16
Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 21/195 (10%)
Query: 29 VARHGDRYKDK----------DEFFENDPFMNEDPFWM-----PHGHGQLRNKGKYRMHY 73
++RHG RY +E +N + ++ G L G+ +
Sbjct: 56 LSRHGARYPTDSKGKKYSALIEEIQQNATTFDGKYAFLKTYNYSLGADDLTPFGEQELVN 115
Query: 74 LGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFF 133
G RY + + S R + S + +G +
Sbjct: 116 SGIKFYQRYESLTRNIVPF----IRSSGSSRVIASGKKFIEGFQSTKLKDPRAQPGQSSP 171
Query: 134 QPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYVAYHTGRNIT 193
+ + S SS + + G + EL + I + +
Sbjct: 172 KIDVVISEASSSNNTLDPGTCTVFEDSELADTVEANFTAT--FVPSIRQRLENDLSGVTL 229
Query: 194 TLREVNEVYQTLRIE 208
T EV + +
Sbjct: 230 TDTEVTYLMDMCSFD 244
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle,
glycoprotein phosphohistidine, hydrolase; HET: NEP NAG;
1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB:
1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Length = 442
Score = 74.1 bits (181), Expect = 2e-15
Identities = 33/234 (14%), Positives = 66/234 (28%), Gaps = 28/234 (11%)
Query: 29 VARHGDRYKDKDEF---------FENDPFMNEDPF------WMPHGHGQLRNKGKYRMHY 73
++RHG RY + + + + F G L G+ ++
Sbjct: 55 LSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTYNYTLGADDLTPFGEQQLVN 114
Query: 74 LGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFF 133
G RY + + + DR + S + +G + N +
Sbjct: 115 SGIKFYQRYKALARSVVPF----IRASGSDRVIASGEKFIEGFQQAKLADPGATN--RAA 168
Query: 134 QPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKY-KDIYEYVAYHTGRNI 192
I + +S D C +E A+ A + DI H
Sbjct: 169 PAISVIIPESETFNNTLDHGVCTKFEASQLG--DEVAANFTALFAPDIRARAEKHLPGVT 226
Query: 193 TTLREVNEVYQTLRIEF----ENGRQMPEWTKQVFPSKLKALAGLYNQVIFYND 242
T +V + + + Q+ + + ++ K L + +Y
Sbjct: 227 LTDEDVVSLMDMCSFDTVARTSDASQLSPFCQLFTHNEWKKYNYLQSLGKYYGY 280
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Length = 458
Score = 71.4 bits (174), Expect = 2e-14
Identities = 34/242 (14%), Positives = 67/242 (27%), Gaps = 41/242 (16%)
Query: 29 VARHGDRY-----------------------KDKDEFFEND-----PFMNEDPFWMPHGH 60
+RHG+RY K + F +D P +
Sbjct: 67 FSRHGERYPSTGSGKKYKAVYEKLMSYNGTFKGELAFLNDDYEYFVPDSVYLEKETSPKN 126
Query: 61 GQLRNKGKYRMHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPS 120
G G + R +Y + ++ + R ++Q ++G
Sbjct: 127 SDSIYAGTTDAMKHGIAFRTKYGELFDTND---TLPVFTSNSGRVYQTSQYFARGFMGDD 183
Query: 121 GVNIWNDNVGKFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDI 180
N I + + L D C Y + N + E K +
Sbjct: 184 FSNDTVK-----TNIISEDADMGANSLTPRD--GCFNYNENANTAIVDEYTTEYLT-KAL 235
Query: 181 YEYVAYHTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALAGLYNQVIFY 240
+ A + G NIT +V+ ++ E N + + + + +Y
Sbjct: 236 NRFKASNPGLNITE-DDVSNLFGYCAYEL-NVKGASPMCDIFTNEEFIQYSYSVDLDDYY 293
Query: 241 ND 242
++
Sbjct: 294 SN 295
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase;
HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP:
c.60.1.2
Length = 460
Score = 66.4 bits (161), Expect = 8e-13
Identities = 29/238 (12%), Positives = 59/238 (24%), Gaps = 41/238 (17%)
Query: 29 VARHGDRY------------------------KDKDEFFENDPFMNEDPFWMPHGHGQLR 64
V RHG+RY K F + + + +
Sbjct: 60 VKRHGERYPSPSAGKDIEEALAKVYSINTTEYKGDLAFLNDWTYYVPNECYYNAETTSGP 119
Query: 65 NKGKYRMHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNI 124
G + G + RY E F+S R + +A+ +G + +
Sbjct: 120 YAGLLDAYNHGNDYKARYGHLWNGETVV---PFFSSGYGRVIETARKFGEGFFGYNYSTN 176
Query: 125 WNDNVGKFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYV 184
I + L P + + ++ + ++K +
Sbjct: 177 AA------LNIISESEVMGADSL-------TPTCDTDNDQTTCDNLTYQLPQFKVAAARL 223
Query: 185 AYHTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALAGLYNQVIFYND 242
T +V + E N R W + + + + +Y
Sbjct: 224 NSQNPGMNLTASDVYNLMVMASFEL-NARPFSNWINAFTQDEWVSFGYVEDLNYYYCA 280
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 3e-04
Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 75/222 (33%)
Query: 74 LGQSLRLRYNGFLKEEYY-YGNIKFYSPDIDRCLMSAQL---ISQGLYP-----PSGVNI 124
+ +S+R +G + + + N + I+ L L + ++ P +I
Sbjct: 333 IAESIR---DGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 125 --------WNDNVGKFFQPIPIKSFDSSQDLIFNDGKSC--------------PPYEKEL 162
W D + + K S L+ K E L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 163 NKVL--------SREMADINAKYKD--IYEYVAYH--TGRNITTLREVNEVYQTLRIEFE 210
++ + + + D+ Y D Y ++ +H + + V+ R
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---- 501
Query: 211 NGRQMPEWTKQVFPSKLKA----------LAGLYNQVIFYND 242
+ +Q K++ + Q+ FY
Sbjct: 502 -------FLEQ----KIRHDSTAWNASGSILNTLQQLKFYKP 532
Score = 37.1 bits (85), Expect = 0.005
Identities = 28/176 (15%), Positives = 48/176 (27%), Gaps = 56/176 (31%)
Query: 34 DRYKDKDEFFENDPFMN-EDPFWMPH-GHGQLRNKGKYRMHYLGQSLRLRYNGFLKEEYY 91
D Y F +D D ++ H GH H R F
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGH-----------HLKNIEHPERMTLFRM---V 496
Query: 92 YGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQDLIFND 151
+ + +F + ++ WN ++ Q L F
Sbjct: 497 FLDFRF---------LEQKIRHDST-------AWNA---------SGSILNTLQQLKFYK 531
Query: 152 G---KSCPPYEKELNKVL----SREMADINAKYKDI--------YEYVAYHTGRNI 192
+ P YE+ +N +L E I +KY D+ E + + +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 35.6 bits (81), Expect = 0.016
Identities = 32/228 (14%), Positives = 66/228 (28%), Gaps = 92/228 (40%)
Query: 54 FWMPHGHGQLRNKGK--YRMHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQL 111
FW L +K + + ++ + LR+ Y FL +
Sbjct: 68 FWT------LLSKQEEMVQK-FVEEVLRINY-KFLMSPIKTEQRQ--------------- 104
Query: 112 ISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQDLIFNDGKSCPPYE-------KELNK 164
PS + + +D ++ND + Y +L +
Sbjct: 105 -------PSM---------------MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 165 VLSREMADINAKYKDIYEYVAYH----TGRNITTLREVNEVYQTLRIEFENGRQMPEWTK 220
L E+ + V +G+ T + +V + +++ +M
Sbjct: 143 AL-LELRPA--------KNVLIDGVLGSGK--TWV--ALDVCLSYKVQ----CKMDF--- 182
Query: 221 QVF----------PSKLKALAGLYNQV----IFYNDKMKRIKAGTYSA 254
++F + L+ L L Q+ +D IK +S
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Score = 35.2 bits (80), Expect = 0.022
Identities = 43/305 (14%), Positives = 82/305 (26%), Gaps = 96/305 (31%)
Query: 22 RLGPIRAVARHG-----------DRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYR 70
L P + V G D M+ FW+ + N +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV----QCKMDFKIFWLNLKN---CNSPETV 198
Query: 71 MHYLGQSLRLRYNG-FLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGV---NIWN 126
+ L Q L + + + + NIK I L +L+ Y + N+ N
Sbjct: 199 LEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQN 255
Query: 127 DNVGKFFQPIPIKSFD-SSQDLI-------FNDGKSCPPYEKELNKV------------- 165
+F+ S + L+ + + L+
Sbjct: 256 AKA--------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 166 ----------LSREMADIN--------AKYKD---IYEYVAYHTGRNITTLR-------- 196
L RE+ N +D ++ + +TT+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 197 --EVNEVYQTLRIEFENGRQMPE------WTKQVFPSKLKALAGLYNQVIFYNDKMKRIK 248
E +++ L + F +P W + + + L+ Y+ K+ K
Sbjct: 368 PAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK----YSLVEKQPK 422
Query: 249 AGTYS 253
T S
Sbjct: 423 ESTIS 427
Score = 28.7 bits (63), Expect = 2.6
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 20/74 (27%)
Query: 169 EMADINAKYKDIYE-----YVA----YHTG---RNITTLREVNEVY-------QTLRIEF 209
E + +YKDI +V ++I + E++ + TLR+ F
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-F 68
Query: 210 ENGRQMPEWTKQVF 223
E Q F
Sbjct: 69 WTLLSKQEEMVQKF 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.021
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 24/48 (50%)
Query: 76 QSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVN 123
Q+L+ K + ++K Y+ D SA P +
Sbjct: 20 QALK-------KLQ---ASLKLYADD------SA--------PALAIK 43
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM,
hydrolase; 1.76A {Bombyx mori}
Length = 263
Score = 30.4 bits (68), Expect = 0.42
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 32/116 (27%)
Query: 29 VARHGDR-----------YKDKDEFFENDPFMNEDPFWMPHGHGQ------LRNKGKYRM 71
RHG+R + D + D + G G L G ++
Sbjct: 9 ALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGWFQA 68
Query: 72 HYLGQSLRLRYNGFLKEEYYYGNIKF---YSPDIDRCLMSAQLISQGLYPPSGVNI 124
+G+ +R+ + Y+ RC+ +AQ GL V I
Sbjct: 69 QLVGEGMRMA------------GVSIKHVYASPALRCVETAQGFLDGLRADPSVKI 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.1
Identities = 46/287 (16%), Positives = 78/287 (27%), Gaps = 114/287 (39%)
Query: 26 IRAVARHGDRYKDKDEFFENDPFMNEDPFWMP-HGHGQLRNKGKYRMHYLGQSLRLRYNG 84
+ V D + F + +P + H G+ G+ +R Y+
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----------GKRIRENYSA 1690
Query: 85 FLKEEYYYGNIKFYS--PDIDRCLMS---------------AQ-------------LISQ 114
+ E G +K +I+ S Q L S+
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 115 GLYPP------------------SGVNIWNDNVGKFFQPIPIKSFDSSQDLIFNDGK--- 153
GL P + V S +S +++F G
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADV---------M-------SIESLVEVVFYRGMTMQ 1794
Query: 154 SCPPYEKELNKVLSREMADIN----------AKYKDIYEYVAYHTGRNITTLRE-VNEVY 202
P ++ M IN + + E V TG + E VN Y
Sbjct: 1795 VAVPRDELGRSNYG--MIAINPGRVAASFSQEALQYVVERVGKRTGWLV----EIVN--Y 1846
Query: 203 QTLRIEFENGRQMPEWTKQVFPS-KLKALAGLYNQVIFYNDKMKRIK 248
N Q + L+AL + N V+ + K+++I
Sbjct: 1847 --------NVENQ-----QYVAAGDLRALDTVTN-VLNFI-KLQKID 1878
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl
group, riken structural genomics/proteomi initiative,
RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Length = 96
Score = 27.4 bits (61), Expect = 1.5
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 102 IDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQDLIFN 150
+D+ L+ A G+ P V+I++ G + S + N
Sbjct: 4 VDQDLLDAA----GILPFEQVDIYDITNGARLTTYALPGERGSGVIGIN 48
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 27.5 bits (62), Expect = 3.4
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 4/23 (17%)
Query: 146 DLIFNDGKSCPPYEKELNKVLSR 168
+ F PPY +L +
Sbjct: 112 TVAFMA----PPYAMDLAALFGE 130
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 27.0 bits (59), Expect = 6.2
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 34/118 (28%)
Query: 29 VARHGDR-------------YKDKDEFFENDPFMNEDPFWMPHGHGQ------LRNKGKY 69
V RHG+R +++ D +G L + G +
Sbjct: 14 VIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDPPLSSCGIF 73
Query: 70 RMHYLGQSLRLRYNGFLKEEYYYGNIKF---YSPDIDRCLMSAQLISQGLYPPSGVNI 124
+ G++L ++ ++ RC+ +A+ I + L + I
Sbjct: 74 QARLAGEALLDS------------GVRVTAVFASPALRCVQTAKHILEELKLEKKLKI 119
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 26.6 bits (59), Expect = 7.5
Identities = 11/57 (19%), Positives = 18/57 (31%)
Query: 95 IKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQDLIFND 151
I+ + D+ R L Q L P I +D + + + I D
Sbjct: 198 IELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILED 254
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 25.9 bits (58), Expect = 7.8
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 167 SREMADINAKYKDIYEYVAYHTGRNITTLR----EVNEV---YQTLRIEFENGRQM 215
+R + + Y+ YE + GR+ LR E++E+ Q LR E +N ++
Sbjct: 3 NRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQ 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.434
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,244,475
Number of extensions: 255726
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 26
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)