RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6921
(256 letters)
>d1nd6a_ c.60.1.2 (A:) Prostatic acid phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 342
Score = 129 bits (325), Expect = 2e-36
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 13/230 (5%)
Query: 29 VARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRYNGFLKE 88
V RHGDR F DP ++ W P G GQL G + + LG+ +R RY FL E
Sbjct: 9 VFRHGDRSPID--TFPTDPI--KESSW-PQGFGQLTQLGMEQHYELGEYIRKRYRKFLNE 63
Query: 89 EYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQD-L 147
Y + + S D+DR LMSA L+PP GV+IWN + +QPIP+ + S+D L
Sbjct: 64 SYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILL--WQPIPVHTVPLSEDQL 121
Query: 148 IFNDGKSCPPYEKELNKVLSREMA-DINAKYKDIYEYVAYHTGRNITTLREV-NEVYQTL 205
++ ++CP +++ ++ L E YKD + +G + L + ++VY L
Sbjct: 122 LYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPL 181
Query: 206 RIEFENGRQMPEWTKQVFPSKLKALAGLYNQVIF---YNDKMKRIKAGTY 252
E + +P W + +KL+ L+ L ++ + R++ G
Sbjct: 182 YCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVL 231
>d1dkla_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Escherichia coli [TaxId: 562]}
Length = 409
Score = 100 bits (249), Expect = 4e-25
Identities = 39/259 (15%), Positives = 74/259 (28%), Gaps = 36/259 (13%)
Query: 29 VARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRYNGFLK- 87
V+RHG R K D + P W P G L +G + YLG R R
Sbjct: 13 VSRHGVRAPTKATQLMQDVTPDAWPTW-PVKLGWLTPRGGELIAYLGHYQRQRLVADGLL 71
Query: 88 ---EEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWN----DNVGKFFQPIPIKS 140
G + + +R + + + GL P + + + F P+
Sbjct: 72 AKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGV 131
Query: 141 FDSSQDLIFND-----GKSCPPYEKELNKVL----------------SREMADINAKYKD 179
+ + G S + RE D +
Sbjct: 132 CQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQ 191
Query: 180 IYEYVAYHTGRNITT---LREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALAGLYNQ 236
+ N++ + + + + ++ G P W + + L L+N
Sbjct: 192 ALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNA 251
Query: 237 ---VIFYNDKMKRIKAGTY 252
++ ++ R +A
Sbjct: 252 QFYLLQRTPEVARSRATPL 270
>d1qwoa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus fumigatus [TaxId: 5085]}
Length = 435
Score = 99 bits (248), Expect = 7e-25
Identities = 30/233 (12%), Positives = 61/233 (26%), Gaps = 26/233 (11%)
Query: 29 VARHGDRYKDKDEFFENDPFMNEDP---------------FWMPHGHGQLRNKGKYRMHY 73
++RHG RY + + + + G L G+ ++
Sbjct: 49 LSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTYNYTLGADDLTPFGEQQLVN 108
Query: 74 LGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFF 133
G RY + + + DR + S + +G + N +
Sbjct: 109 SGIKFYQRYKALARSVVPF----IRASGSDRVIASGEKFIEGFQQAKLADPGATN--RAA 162
Query: 134 QPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYVAYHTGRNIT 193
I + +S D C +E DI H
Sbjct: 163 PAISVIIPESETFNNTLDHGVCTKFEASQLGD-EVAANFTALFAPDIRARAEKHLPGVTL 221
Query: 194 TLREVNEVYQTLRIEF----ENGRQMPEWTKQVFPSKLKALAGLYNQVIFYND 242
T +V + + + Q+ + + ++ K L + +Y
Sbjct: 222 TDEDVVSLMDMCSFDTVARTSDASQLSPFCQLFTHNEWKKYNYLQSLGKYYGY 274
>d1ihpa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus ficuum [TaxId: 5058]}
Length = 438
Score = 96.8 bits (240), Expect = 1e-23
Identities = 28/233 (12%), Positives = 59/233 (25%), Gaps = 25/233 (10%)
Query: 29 VARHGDRYKDKDEFFENDPFMNE----------DPFWM-----PHGHGQLRNKGKYRMHY 73
++RHG RY + + + E ++ G L G+ +
Sbjct: 50 LSRHGARYPTDSKGKKYSALIEEIQQNATTFDGKYAFLKTYNYSLGADDLTPFGEQELVN 109
Query: 74 LGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFF 133
G RY + + S R + S + +G +
Sbjct: 110 SGIKFYQRYESLTRNIVPF----IRSSGSSRVIASGKKFIEGFQSTKLKDPRAQPGQSSP 165
Query: 134 QPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYVAYHTGRNIT 193
+ + S SS + + G + EL + I + +
Sbjct: 166 KIDVVISEASSSNNTLDPGTCTVFEDSELADTVEAN--FTATFVPSIRQRLENDLSGVTL 223
Query: 194 TLREVNEVYQTLRIEF----ENGRQMPEWTKQVFPSKLKALAGLYNQVIFYND 242
T EV + + ++ + + L + +Y
Sbjct: 224 TDTEVTYLMDMCSFDTISTSTVDTKLSPFCDLFTHDEWINYDYLQSLKKYYGH 276
>d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 95.5 bits (236), Expect = 2e-23
Identities = 35/251 (13%), Positives = 73/251 (29%), Gaps = 27/251 (10%)
Query: 29 VARHGDRYKDKDEFFENDPFMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRY--NGFL 86
++R R + + GQL KG Y+G +R G +
Sbjct: 15 MSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMV 74
Query: 87 KEEYYY--GNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWN----DNVGKFFQPIPIKS 140
K + Y+ + R + +AQ G +P + + + + F P+
Sbjct: 75 KSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDD 134
Query: 141 FDSSQDLI------FNDGKSCPPYEKELNKVL-----SREMADINAKYKDIYEYVAYHTG 189
+ + + L K++ D +
Sbjct: 135 SAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQ 194
Query: 190 RNI---TTLREVNEVYQTLRIEFENGRQMPE--WTKQVFPSKLKALAGLYNQ---VIFYN 241
+ L+ N + +++ G M + W + + K L+ L N +F +
Sbjct: 195 QEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTS 254
Query: 242 DKMKRIKAGTY 252
++ R A
Sbjct: 255 PEVARNVAKPL 265
>d1qfxa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus niger [TaxId: 5061]}
Length = 447
Score = 84.4 bits (208), Expect = 2e-19
Identities = 30/252 (11%), Positives = 62/252 (24%), Gaps = 45/252 (17%)
Query: 29 VARHGDRYKDKD------------------------EFFENDPFMNEDPFWMPHGHGQLR 64
V RHG+RY F + + + +
Sbjct: 47 VKRHGERYPSPSAGKDIEEALAKVYSINTTEYKGDLAFLNDWTYYVPNECYYNAETTSGP 106
Query: 65 NKGKYRMHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNI 124
G + G + RY E + F+S R + +A+ +G + +
Sbjct: 107 YAGLLDAYNHGNDYKARYGHLWNGET---VVPFFSSGYGRVIETARKFGEGFFGYNYSTN 163
Query: 125 WNDNVGKFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYV 184
I + + P + + ++ + ++K +
Sbjct: 164 AA------LNIIS-------ESEVMGADSLTPTCDTDNDQTTCDNLTYQLPQFKVAAARL 210
Query: 185 AYHTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALAGLYNQVIFYN--- 241
T +V + E N R W + + + + +Y
Sbjct: 211 NSQNPGMNLTASDVYNLMVMASFEL-NARPFSNWINAFTQDEWVSFGYVEDLNYYYCAGP 269
Query: 242 -DKMKRIKAGTY 252
DK Y
Sbjct: 270 GDKNMAAVGAVY 281
>d2je6i2 b.84.4.2 (I:7-65) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 59
Score = 25.8 bits (57), Expect = 1.1
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 51 EDPFWMPHGHGQLRNKGKYRMHYLG 75
E F +P L+ KY +G
Sbjct: 19 EGEFQIPWSPYILKINSKYYSTVVG 43
>d2dp9a1 b.122.1.5 (A:1-120) Hypothetical protein TTHA0113 {Thermus
thermophilus [TaxId: 274]}
Length = 120
Score = 26.0 bits (57), Expect = 2.6
Identities = 4/54 (7%), Positives = 16/54 (29%)
Query: 86 LKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIK 139
L +++ ++ L + +N ++ +P+ +
Sbjct: 52 LVGVEGPFSVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVP 105
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
[TaxId: 32046]}
Length = 743
Score = 26.7 bits (59), Expect = 3.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 112 ISQGLYPPSGVNIWNDNVGKFFQPIPIKS 140
+Q ++P G I N +VG F I I S
Sbjct: 101 SAQVVWPIVGQGILNGDVGGGFHGIQITS 129
>d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA
{Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 24.9 bits (54), Expect = 6.6
Identities = 6/40 (15%), Positives = 8/40 (20%), Gaps = 1/40 (2%)
Query: 48 FMNEDPFWMPHGHGQLRNKGKYRMHYLGQSLRLRYNGFLK 87
R+ R H L LR +
Sbjct: 57 TTLSAEQNAHMEAVLQRSAAHMR-HLLMSQQTLRNVPPIV 95
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 223
Score = 25.0 bits (54), Expect = 8.3
Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 17/125 (13%)
Query: 130 GKFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIY-EYVAYHT 188
F P D +Q+ IF PP EL + + D+ K E V +
Sbjct: 2 PSLFNPEEFMPLDPTQEPIF------PP---ELLR-----LKDVPPKQLRFEGERVTWIQ 47
Query: 189 GRNITTLREVNEVYQTLRIEFENGRQMPEWTKQV-FPSKLKALAGLYN-QVIFYNDKMKR 246
+ L ++ + ++ N E + + A + + + +
Sbjct: 48 ASTLKELLDLKAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGIS 107
Query: 247 IKAGT 251
A
Sbjct: 108 FGAAC 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.434
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,069,703
Number of extensions: 53319
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 16
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)