Query psy6922
Match_columns 197
No_of_seqs 217 out of 1681
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 21:53:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h62_K Mediator of RNA polymer 19.2 41 0.0014 19.7 1.1 10 2-11 16-25 (40)
2 2cx6_A Hypothetical protein YH 15.2 87 0.003 21.5 2.2 24 80-104 20-43 (90)
3 2za4_B Barstar; protein-protei 13.1 1.1E+02 0.0037 20.8 2.2 25 80-105 20-44 (90)
4 2bnl_A Modulator protein RSBR; 6.7 2.5E+02 0.0085 21.2 2.1 43 73-117 46-88 (136)
5 2kfe_A Meucin-24; alpha-helix, 6.6 2E+02 0.007 15.6 1.1 9 2-10 11-19 (26)
6 2lq2_A De novo designed antifr 5.6 37 0.0012 18.7 -2.3 11 9-19 5-15 (30)
7 3arc_K Photosystem II reaction 4.4 4.1E+02 0.014 15.5 1.6 14 94-107 7-20 (37)
8 1q02_A Sequestosome 1; helical 3.9 1.3E+02 0.0044 19.1 -1.0 22 78-99 26-47 (52)
9 1j6x_A Autoinducer-2 productio 3.8 2.8E+02 0.0096 21.5 0.7 23 1-23 101-123 (160)
10 3tj1_A RNA polymerase I-specif 3.6 1.8E+03 0.061 20.6 6.2 48 38-85 432-480 (649)
No 1
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=19.22 E-value=41 Score=19.66 Aligned_cols=10 Identities=60% Similarity=0.880 Sum_probs=7.6
Q ss_pred hhhHHHHHhh
Q psy6922 2 KEKMEEVIEL 11 (197)
Q Consensus 2 ~~~~~~~~~~ 11 (197)
.|||||-+|.
T Consensus 16 tekmeeqldl 25 (40)
T 4h62_K 16 TEKMEEQLDL 25 (40)
T ss_pred HHHHHHHHHH
Confidence 3889998764
No 2
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=15.25 E-value=87 Score=21.51 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.9
Q ss_pred HHHhhcCCcccccccchhhhhHHHH
Q psy6922 80 WIARTYKNQSTKLGSFLDPMADKVL 104 (197)
Q Consensus 80 ~lAR~~~~~~S~~G~~LDplaDki~ 104 (197)
.+++++ +-..-+|+-||.+.|-+.
T Consensus 20 ~~~~~~-~~p~~fG~NlDAL~D~Lt 43 (90)
T 2cx6_A 20 DFSQTF-GLAKDKVRDLDSLWDVLM 43 (90)
T ss_dssp HHHHHT-TCCTTSCSSHHHHHHHHH
T ss_pred HHHHHh-CCchhhCCCHHHHHHHHc
Confidence 578888 688889999999999876
No 3
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=13.08 E-value=1.1e+02 Score=20.77 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=21.5
Q ss_pred HHHhhcCCcccccccchhhhhHHHHH
Q psy6922 80 WIARTYKNQSTKLGSFLDPMADKVLI 105 (197)
Q Consensus 80 ~lAR~~~~~~S~~G~~LDplaDki~~ 105 (197)
.+++.+ +-..-+|+-+|.+.|-+..
T Consensus 20 ~l~~~l-~~P~~fG~NlDAL~D~L~~ 44 (90)
T 2za4_B 20 TLKKEL-ALPEYYGENLDALWAALTG 44 (90)
T ss_dssp HHHHHT-TCCTTCCCSHHHHHHHHHH
T ss_pred HHHHHh-CCCcccCCCHHHHHHHhcC
Confidence 578888 6778899999999999875
No 4
>2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis}
Probab=6.70 E-value=2.5e+02 Score=21.15 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=32.9
Q ss_pred HHHHHhHHHHhhcCCcccccccchhhhhHHHHHHHHHHHHHhhcc
Q psy6922 73 ITDGLDGWIARTYKNQSTKLGSFLDPMADKVLIATLFLSLTYVEL 117 (197)
Q Consensus 73 ltD~lDG~lAR~~~~~~S~~G~~LDplaDki~~~~~~~~l~~~~~ 117 (197)
--|++|=.++.-. + .+.+.+.||.+|+|+.-+...+.++-.|.
T Consensus 46 s~Efv~lils~i~-~-~~~~~e~l~~Faer~VqlGwpL~~lT~GL 88 (136)
T 2bnl_A 46 SKEYIDILLLSVK-D-ENAAESQISELALRAVQIGLSMKFLATAL 88 (136)
T ss_dssp HHHHHHHHHTCSS-C-TTTTHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHcc-c-chhHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 3477888888876 6 68999999999999987666655555543
No 5
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=6.55 E-value=2e+02 Score=15.59 Aligned_cols=9 Identities=56% Similarity=0.634 Sum_probs=6.4
Q ss_pred hhhHHHHHh
Q psy6922 2 KEKMEEVIE 10 (197)
Q Consensus 2 ~~~~~~~~~ 10 (197)
|||.+|+.|
T Consensus 11 K~kl~~akd 19 (26)
T 2kfe_A 11 KEKLSGVKE 19 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677777765
No 6
>2lq2_A De novo designed antifreeze peptide 4M; AFP, antifreeze protein; NMR {Synthetic}
Probab=5.61 E-value=37 Score=18.74 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=5.4
Q ss_pred HhhCCCCChhh
Q psy6922 9 IELNNFPSQDY 19 (197)
Q Consensus 9 ~~~~~~~~~~~ 19 (197)
+|++++|+.|+
T Consensus 5 idapdfpsspa 15 (30)
T 2lq2_A 5 IDAPDFPSSPA 15 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred ccCCCCCCCHH
Confidence 45555555443
No 7
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=4.36 E-value=4.1e+02 Score=15.51 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=9.5
Q ss_pred cchhhhhHHHHHHH
Q psy6922 94 SFLDPMADKVLIAT 107 (197)
Q Consensus 94 ~~LDplaDki~~~~ 107 (197)
+.+||+.|..=...
T Consensus 7 a~f~PivDvmPiIP 20 (37)
T 3arc_K 7 AIFDPLVDVLPVIP 20 (37)
T ss_dssp GGGHHHHHHGGGHH
T ss_pred hhhchHHHHhchHH
Confidence 57888888754443
No 8
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=3.86 E-value=1.3e+02 Score=19.12 Aligned_cols=22 Identities=27% Similarity=0.761 Sum_probs=12.8
Q ss_pred hHHHHhhcCCcccccccchhhh
Q psy6922 78 DGWIARTYKNQSTKLGSFLDPM 99 (197)
Q Consensus 78 DG~lAR~~~~~~S~~G~~LDpl 99 (197)
-||++|-.....-++|+.||.+
T Consensus 26 gGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 26 GGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp TSHHHHHHHHTTTCHHHHHHHH
T ss_pred ccHHHHHHHHccCCHHHHHHHh
Confidence 4677766522234677777754
No 9
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=3.80 E-value=2.8e+02 Score=21.47 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=15.4
Q ss_pred ChhhHHHHHhhCCCCChhhhhhc
Q psy6922 1 MKEKMEEVIELNNFPSQDYQAYY 23 (197)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (197)
+|+-|++|++..++|...+..|.
T Consensus 101 ~~~~l~~Il~~~eVPga~~~qCG 123 (160)
T 1j6x_A 101 LEKTMQDVLKAKEVPASNEKQCG 123 (160)
T ss_dssp HHHHHHHHTTCSSCTTCSTTTCT
T ss_pred HHHHHHHHHhcCCCCCCChhcCC
Confidence 36778889988777766554433
No 10
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=3.62 E-value=1.8e+03 Score=20.61 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHhHHHHhhc
Q psy6922 38 PNLLCISRICLSPLLGYFIIHGQY-SYALAFVVVAGITDGLDGWIARTY 85 (197)
Q Consensus 38 PN~lT~~Ri~l~~~~~~~~~~~~~-~~a~~l~~la~ltD~lDG~lAR~~ 85 (197)
||.-...|...+..++-++....+ ....+..++..+++|++.|+-++-
T Consensus 432 ~~~~~~~RqaAaaYLaSflARAk~v~~~~v~~vl~~L~~wl~~Yi~~~~ 480 (649)
T 3tj1_A 432 VNEAAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIERE 480 (649)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHBTTCCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444456677766655545544443 356677888999999999998753
Done!