Query psy6922
Match_columns 197
No_of_seqs 217 out of 1681
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 21:54:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6922.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6922hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cx6a1 c.9.1.1 (A:1-90) Hypot 8.7 90 0.0065 20.0 2.2 24 80-104 20-43 (90)
2 d2al6a2 b.55.1.5 (A:254-363) F 7.9 69 0.005 21.6 1.4 12 71-82 85-96 (110)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.8 3.5E+02 0.026 20.1 5.4 28 55-84 22-49 (248)
4 d1ay7b_ c.9.1.1 (B:) Barstar ( 5.9 1.5E+02 0.011 18.7 2.2 24 80-104 19-42 (89)
5 d1s2xa_ a.47.3.1 (A:) Cag-Z {H 4.8 63 0.0046 22.6 -0.4 72 21-110 80-151 (180)
6 d2axtk1 f.23.36.1 (K:10-46) Ph 4.7 1.6E+02 0.012 15.8 1.4 14 94-107 7-20 (37)
7 d1uela_ d.15.1.1 (A:) Ubiquiti 3.9 1.6E+02 0.011 18.2 1.2 25 2-26 27-51 (95)
8 d1xhoa_ d.79.1.2 (A:) Chorisma 3.7 2.2E+02 0.016 19.0 1.8 16 2-17 23-38 (112)
9 d1oqya4 d.15.1.1 (A:1-77) Ubiq 3.5 1.4E+02 0.01 17.7 0.6 25 2-26 29-53 (77)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.4 3E+02 0.022 17.5 2.3 27 87-113 22-48 (107)
No 1
>d2cx6a1 c.9.1.1 (A:1-90) Hypothetical protein YhcO {Escherichia coli [TaxId: 562]}
Probab=8.71 E-value=90 Score=20.03 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.4
Q ss_pred HHHhhcCCcccccccchhhhhHHHH
Q psy6922 80 WIARTYKNQSTKLGSFLDPMADKVL 104 (197)
Q Consensus 80 ~lAR~~~~~~S~~G~~LDplaDki~ 104 (197)
.+|+++ +-..-+|+-+|.+.|-+.
T Consensus 20 ~~~~~l-~fp~~fG~NlDAl~D~lt 43 (90)
T d2cx6a1 20 DFSQTF-GLAKDKVRDLDSLWDVLM 43 (90)
T ss_dssp HHHHHT-TCCTTSCSSHHHHHHHHH
T ss_pred HHHHHc-CCcchhCCCHHHHHHHHc
Confidence 457888 788899999999999875
No 2
>d2al6a2 b.55.1.5 (A:254-363) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.93 E-value=69 Score=21.62 Aligned_cols=12 Identities=25% Similarity=0.565 Sum_probs=9.7
Q ss_pred HHHHHHHhHHHH
Q psy6922 71 AGITDGLDGWIA 82 (197)
Q Consensus 71 a~ltD~lDG~lA 82 (197)
-.+.|.+|||.=
T Consensus 85 e~lAdLIdGYCr 96 (110)
T d2al6a2 85 ENMADLIDGYCR 96 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhheEE
Confidence 457899999974
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.76 E-value=3.5e+02 Score=20.06 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=21.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhHHHHhh
Q psy6922 55 FIIHGQYSYALAFVVVAGITDGLDGWIART 84 (197)
Q Consensus 55 ~~~~~~~~~a~~l~~la~ltD~lDG~lAR~ 84 (197)
++.++++.++++++++..+.|++ ++.||
T Consensus 22 ~~~~~~~~~a~~~~~~~~~~~~v--y~s~r 49 (248)
T d2r6gf1 22 MYAQGEYLFAITTLILSSAGLYI--FANRK 49 (248)
T ss_dssp HHGGGCHHHHHHHHHHHHHHHHH--HSSSC
T ss_pred HHHcchHHHHHHHHHHHHheEEE--EEccC
Confidence 34467888898888888999988 55554
No 4
>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=5.91 E-value=1.5e+02 Score=18.70 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=20.1
Q ss_pred HHHhhcCCcccccccchhhhhHHHH
Q psy6922 80 WIARTYKNQSTKLGSFLDPMADKVL 104 (197)
Q Consensus 80 ~lAR~~~~~~S~~G~~LDplaDki~ 104 (197)
.+++++ +-..-+|+-+|.+.|-+.
T Consensus 19 ~~~~~l-~~p~~~G~N~DAl~D~lt 42 (89)
T d1ay7b_ 19 TLKKEL-ALPEYYGENLDALWDCLT 42 (89)
T ss_dssp HHHHHT-TCCTTCCSSHHHHHHHHH
T ss_pred HHHHHc-CCCcccCCCHHHHHHHHc
Confidence 567888 688899999999999654
No 5
>d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]}
Probab=4.78 E-value=63 Score=22.60 Aligned_cols=72 Identities=24% Similarity=0.371 Sum_probs=36.3
Q ss_pred hhcccCCCCcCCcccchhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhcCCcccccccchhhhh
Q psy6922 21 AYYGECGTGKKENIYTVPNLLCISRICLSPLLGYFIIHGQYSYALAFVVVAGITDGLDGWIARTYKNQSTKLGSFLDPMA 100 (197)
Q Consensus 21 ~~~~~~~~~~~~~~~~~PN~lT~~Ri~l~~~~~~~~~~~~~~~a~~l~~la~ltD~lDG~lAR~~~~~~S~~G~~LDpla 100 (197)
++|++|.+++.-.--++-|-+|+.-++.-. .+++ --+-+=-++-++|.+-.|+-|.+ |-|+.
T Consensus 80 asynrckqektfaestikneltlgefvaei-------sdnf-nnftcdevarisdlvasylprey----------lppfi 141 (180)
T d1s2xa_ 80 ASYNRCKQEKTFAESTIKNELTLGEFVAEI-------SDNF-NNFTCDEVARISDLVASYLPREY----------LPPFI 141 (180)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------HHHH-HHHHHHHHHHHHHHHHTTSCGGG----------CCTTC
T ss_pred HHHhhhhhhhhHHHHHHhhhhhHHHHHHHH-------hccc-ccccHHHHHHHHHHHHHhCcHhh----------CCCcc
Confidence 455666555444444566666665443311 1111 12223345677787777777765 33555
Q ss_pred HHHHHHHHHH
Q psy6922 101 DKVLIATLFL 110 (197)
Q Consensus 101 Dki~~~~~~~ 110 (197)
|--.+++++.
T Consensus 142 dgnmmgvafq 151 (180)
T d1s2xa_ 142 DGNMMGVAFQ 151 (180)
T ss_dssp CHHHHHHHHH
T ss_pred CCccceeeee
Confidence 5544444443
No 6
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.69 E-value=1.6e+02 Score=15.77 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=9.3
Q ss_pred cchhhhhHHHHHHH
Q psy6922 94 SFLDPMADKVLIAT 107 (197)
Q Consensus 94 ~~LDplaDki~~~~ 107 (197)
+.+||+.|..=.+.
T Consensus 7 ~~f~PivdvlPiIP 20 (37)
T d2axtk1 7 AIFDPLVDVLPVIP 20 (37)
T ss_dssp GGCHHHHHHGGGHH
T ss_pred hhhchHHHHhccHH
Confidence 56788888754443
No 7
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.95 E-value=1.6e+02 Score=18.21 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=18.2
Q ss_pred hhhHHHHHhhCCCCChhhhhhcccC
Q psy6922 2 KEKMEEVIELNNFPSQDYQAYYGEC 26 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (197)
|++++|.......|...++..|++-
T Consensus 27 K~~i~~~~~~~~i~~~~qrLi~~Gk 51 (95)
T d1uela_ 27 KEKIESEKGKDAFPVAGQKLIYAGK 51 (95)
T ss_dssp HHHHHHHHCTTTCCTTTEEEEETTE
T ss_pred HHHHHhhhcccCCCccceEEEECCe
Confidence 6777777666678888888877763
No 8
>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum [TaxId: 1515]}
Probab=3.72 E-value=2.2e+02 Score=19.02 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=11.7
Q ss_pred hhhHHHHHhhCCCCCh
Q psy6922 2 KEKMEEVIELNNFPSQ 17 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (197)
+|-++|+++.|+..+.
T Consensus 23 ~eLl~~ii~~N~l~~e 38 (112)
T d1xhoa_ 23 QKLLKEMAEKNGLEED 38 (112)
T ss_dssp HHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHcCCCHH
Confidence 5678888888887543
No 9
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.51 E-value=1.4e+02 Score=17.70 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=17.8
Q ss_pred hhhHHHHHhhCCCCChhhhhhcccC
Q psy6922 2 KEKMEEVIELNNFPSQDYQAYYGEC 26 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (197)
|++++|.....+.|...++..|++-
T Consensus 29 K~~i~~~~g~~~i~~~~qrLi~~Gk 53 (77)
T d1oqya4 29 KEKIEAEKGRDAFPVAGQKLIYAGK 53 (77)
T ss_dssp HHHHHHHTCSSSCCSTEEEEESSSS
T ss_pred HHHHHHhcCCCCCChHHEEeEECCc
Confidence 6667666555678888888888763
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.39 E-value=3e+02 Score=17.45 Aligned_cols=27 Identities=15% Similarity=0.018 Sum_probs=20.7
Q ss_pred CcccccccchhhhhHHHHHHHHHHHHH
Q psy6922 87 NQSTKLGSFLDPMADKVLIATLFLSLT 113 (197)
Q Consensus 87 ~~~S~~G~~LDplaDki~~~~~~~~l~ 113 (197)
...|+.++.+|.+-|-++..+..+...
T Consensus 22 d~~Sp~ae~i~~lh~~v~~i~~~I~~~ 48 (107)
T d3ehbb2 22 PASSPLAHDQQWLDHFVLYIITAVTIF 48 (107)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888999998888888777766654
Done!