RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6922
         (197 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 50.6 bits (120), Expect = 1e-07
 Identities = 33/236 (13%), Positives = 68/236 (28%), Gaps = 79/236 (33%)

Query: 2   KEKMEEVIE--LNNFPSQDYQAYYGECG-------------------------------- 27
            +K+  +IE  LN     +Y+  +                                    
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 28  -------TGKKENIYTVPNLLCISRICLSPLLGYFIIH----GQYSYALAFVVVAGITDG 76
                     KE+  ++P++    ++    L   + +H      Y+    F     I   
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKV---KLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 77  LDGWIARTYKNQSTKLGSFLDP--MADKV-LIATLFLSLTYVELIPSKFKNQGNICGKVE 133
           LD +   ++      +G  L      +++ L   +FL   ++E    K ++         
Sbjct: 469 LDQYFY-SH------IGHHLKNIEHPERMTLFRMVFLDFRFLE---QKIRHDSTAWNASG 518

Query: 134 PFT-TLVDIRTLSRYF------DVTLVTAQLAPTFISKCNTS---------VQLCL 173
               TL  ++    Y          LV A L   F+ K   +         +++ L
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENLICSKYTDLLRIAL 572


>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET:
           1PE; 1.83A {Saccharomyces cerevisiae EC1118}
          Length = 204

 Score = 26.5 bits (59), Expect = 5.6
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 16/90 (17%)

Query: 83  RTYKNQSTKLGSFLDPMADKVLIA----------TLFLSLTYVELIPSKFKNQGNICGKV 132
            ++ + ++    F +P    +L            TL ++L    L+ S++  +       
Sbjct: 2   MSHASFNSMFTYFQEPPFPDLLPPPPPPPYQRPLTLVITLEDF-LVHSEWSQKHGWRTAK 60

Query: 133 EPFTTLVD--IRTLSRYFDVTLVTAQLAPT 160
            P     D  +  LS+Y+++ L ++     
Sbjct: 61  RPG---ADYFLGYLSQYYEIVLFSSNYMMY 87


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 6.2
 Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 7/44 (15%)

Query: 68   VVVAGITDGLD--GWIARTYKNQSTKL----GSF-LDPMADKVL 104
             V AG    LD    +    K Q   +     S  L+ +   + 
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,986,602
Number of extensions: 170109
Number of successful extensions: 318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 4
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)