RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6922
         (197 letters)



>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 100

 Score = 24.5 bits (53), Expect = 4.3
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 1  MKEKMEEVIELNNFPSQDYQAYYGECGTGKKENIY 35
          + +K ++ + L +F   +   YY        +N Y
Sbjct: 38 LPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTY 72


>d1b66a_ d.96.1.2 (A:) 6-pyruvoyl tetrahydropterin synthase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 138

 Score = 24.5 bits (53), Expect = 7.3
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 57  IHGQYSYALAFVVVAGITDGLDGWIARTYKNQSTKLGSFLDPMADKVL 104
            HG ++Y +  V + G  D + G +      +     + + P+  K L
Sbjct: 41  GHG-HNYKV-VVTIHGEIDPVTGMVMNLTDLKEYMEEAIMKPLDHKNL 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 721,997
Number of extensions: 31676
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 3
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)