BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6923
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G+D++ G +++DY G+ PPKG+G W+
Sbjct: 68 LTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLV 124
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G++++ G +++DY G+ PPKG+G W+
Sbjct: 67 LTDPDAPSRKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLV 123
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G++++ G +++DY G+ PPKG+G W+
Sbjct: 67 LTDPDAPSRKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLV 123
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT-EV 59
+ DPDAPSRKD K H+LV N+ G+D++ G ++++Y G+ PPK +G W+ E
Sbjct: 68 LTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQ 127
Query: 60 KQLGNSGTINQSRAAGFFQPGVKVCHIIADYRGAMPPKGS 99
+Q N S +G + KV Y P G+
Sbjct: 128 EQPLNCDEPILSNKSGDNRGKFKVEEFRKKYHLGAPVAGT 167
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNK--GHIIADYRGAMPPKGSG 49
MVDPDAP+R+D K ILH+ V NIPG + N GH +ADY G+ PPK +G
Sbjct: 60 MVDPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTG 110
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G+D++ G ++++Y G+ PPK +G W+
Sbjct: 71 LTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLV 127
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWI 56
+ DPDAPSRK H+LV N+ G+D++ G++++DY G+ PPKG+G W+
Sbjct: 64 LTDPDAPSRKKPVYREWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWL 119
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHD-VNKGHIIADYRGAMPPKGSGR 50
MVDPDAPS D L LH+LV +IPG + G + Y P G R
Sbjct: 71 MVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHR 121
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHD-VNKGHIIADYRGAMPPKGSGRTSSQWITEV 59
MVDPD PS + L LH+LV +IP G+ I Y P G R
Sbjct: 72 MVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVV---FILF 128
Query: 60 KQLG 63
+QLG
Sbjct: 129 RQLG 132
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG-HDVNKGHIIADYRGAMPPKGSGR 50
M+DPD P D L LH++V NIPG D G + Y P G R
Sbjct: 75 MIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHR 125
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 18/67 (26%)
Query: 1 MVDPDAPSRKDQKLSPILHYL-----VGNIPGHDVN------------KG-HIIADYRGA 42
M DPDAPS+ D K S H + + N H+ + KG + + +Y G
Sbjct: 94 MTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGP 153
Query: 43 MPPKGSG 49
PPKGSG
Sbjct: 154 APPKGSG 160
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG-HDVNKGHIIADYRGAMPPKGSGR 50
M DPD P D L LH++V +IPG D + G + Y P G R
Sbjct: 74 MTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHR 124
>pdb|3LQK|A Chain A, Crystal Structure Of Dipicolinate Synthase Subunit B From
Bacillus Halodurans C
Length = 201
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 52 SSQWITEVKQLGNSGTINQSRAAGFFQPGVKV-CHIIADYRGAMPPKGSGSILKGPVPNG 110
SS+WI ++KQ+ ++ A F P + C +IA G K + + PV G
Sbjct: 56 SSEWINKIKQITEEPIVDSXVKAEPFGPKTPLDCXVIAPXTGNSTSKFANAXTDSPVLXG 115
Query: 111 S 111
+
Sbjct: 116 A 116
>pdb|2X0S|A Chain A, 3.0 A Resolution Crystal Structure Of Glycosomal Pyruvate
Phosphate Dikinase From Trypanosoma Brucei
Length = 913
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 29 DVNKGHIIADYRGAMPP--KGSGRTSSQWITEVKQLG---NSGT-INQSRAAGFFQPGVK 82
D +KG I A P KGS +T QW E+K+LG N+ T + ++A F GV
Sbjct: 525 DGSKGLIYAGKLKLRSPDLKGSFQTILQWCQEMKRLGVRTNADTPADAAKARSFGAEGVG 584
Query: 83 VC 84
+C
Sbjct: 585 LC 586
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGH-----IIADYRGAMPPKGSGRTSSQW 55
MVDPD PSR +H++V I ++ KG I Y G KG+G +
Sbjct: 90 MVDPDYPSRLRPDGKEYIHWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISF 149
Query: 56 ITEV 59
I +
Sbjct: 150 IISL 153
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 2 VDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGH-----IIADYRGAMPPKGSGRTSSQWI 56
+DPD PSR+ +H+ V I ++ KG + Y G KG+G +I
Sbjct: 84 IDPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFI 143
Query: 57 TEVKQLGNSGTI 68
+ + N G +
Sbjct: 144 LSLVKEENKGNV 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,984,398
Number of Sequences: 62578
Number of extensions: 158846
Number of successful extensions: 211
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 24
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)