BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6923
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48737|PEBP1_MACFA Phosphatidylethanolamine-binding protein 1 OS=Macaca fascicularis
GN=PEBP1 PE=2 SV=2
Length = 187
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G+D++ G +++DY G+ PPKG+G W+
Sbjct: 68 LTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLV 124
>sp|Q5R4R0|PEBP1_PONAB Phosphatidylethanolamine-binding protein 1 OS=Pongo abelii GN=PEBP1
PE=2 SV=3
Length = 187
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G+D++ G +++DY G+ PPKG+G W+
Sbjct: 68 LTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLV 124
>sp|Q3YIX4|PEBP1_CANFA Phosphatidylethanolamine-binding protein 1 OS=Canis familiaris
GN=PEBP1 PE=1 SV=1
Length = 187
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G+D++ G +++DY G+ PPKG+G W+
Sbjct: 68 LTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLV 124
>sp|P30086|PEBP1_HUMAN Phosphatidylethanolamine-binding protein 1 OS=Homo sapiens GN=PEBP1
PE=1 SV=3
Length = 187
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G+D++ G +++DY G+ PPKG+G W+
Sbjct: 68 LTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLV 124
>sp|P70296|PEBP1_MOUSE Phosphatidylethanolamine-binding protein 1 OS=Mus musculus GN=Pebp1
PE=1 SV=3
Length = 187
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G+D++ G +++DY G+ PP G+G W+
Sbjct: 68 LTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSDYVGSGPPSGTGLHRYVWLV 124
>sp|P13696|PEBP1_BOVIN Phosphatidylethanolamine-binding protein 1 OS=Bos taurus GN=PEBP1
PE=1 SV=2
Length = 187
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G++++ G +++DY G+ PPKG+G W+
Sbjct: 68 LTDPDAPSRKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLV 124
>sp|P31044|PEBP1_RAT Phosphatidylethanolamine-binding protein 1 OS=Rattus norvegicus
GN=Pebp1 PE=1 SV=3
Length = 187
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G+D++ G ++++Y G+ PPK +G W+
Sbjct: 68 LTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLV 124
>sp|Q8MK67|PEBP1_RABIT Phosphatidylethanolamine-binding protein 1 OS=Oryctolagus cuniculus
GN=PEBP1 PE=2 SV=1
Length = 187
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWIT 57
+ DPDAPSRKD K H+LV N+ G +++ G +++DY G+ PPKG+G W+
Sbjct: 68 LTDPDAPSRKDPKYREWHHFLVVNMKGGNISSGTVLSDYVGSGPPKGTGLHRYVWLV 124
>sp|Q8VIN1|PEBP2_MOUSE Phosphatidylethanolamine-binding protein 2 OS=Mus musculus GN=Pbp2
PE=1 SV=1
Length = 187
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWI 56
+ DPDAPSRK H+LV N+ G+D++ G++++DY G+ PPKG+G W+
Sbjct: 68 LTDPDAPSRKKPVYREWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWL 123
>sp|P54186|D1_ONCVO Protein D1 (Fragment) OS=Onchocerca volvulus GN=D1 PE=2 SV=1
Length = 152
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
M DPDAPSRK+ H+L+ NI G +V+ G +++DY G+ PPKG+G
Sbjct: 51 MTDPDAPSRKNPVFREWHHWLIINISGQNVSSGTVLSDYIGSGPPKGTG 99
>sp|P54185|OBA5_DROME Putative odorant-binding protein A5 OS=Drosophila melanogaster
GN=a5 PE=2 SV=2
Length = 210
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
M+ PDAP+R++ LH+LV N+PG D+ KG I++Y G +PPK SG
Sbjct: 89 MICPDAPNRENPMYRSWLHWLVVNVPGLDIMKGQPISEYFGPLPPKDSG 137
>sp|P54187|D2_ONCVO Protein D2 (Fragment) OS=Onchocerca volvulus GN=D2 PE=3 SV=1
Length = 114
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
M DPD PSRK+ H+L+ NI G +V+ G +++DY G+ PPKG+G
Sbjct: 13 MTDPDVPSRKNPVFREWHHWLIINISGQNVSSGTVLSDYIGSGPPKGTG 61
>sp|O16264|PEBPH_CAEEL Phosphatidylethanolamine-binding protein homolog F40A3.3
OS=Caenorhabditis elegans GN=F40A3.3 PE=3 SV=1
Length = 221
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 2 VDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
DPDAPSRK+ H+LV NIPG+D+ KG +++Y GA PP +G
Sbjct: 103 TDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTG 150
>sp|P54188|D3_ONCVO Protein D3 (Fragment) OS=Onchocerca volvulus GN=D3 PE=2 SV=1
Length = 134
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
M DPDAPSRK+ H+L+ NI G +V+ G +++DY G+ PKG+G
Sbjct: 33 MTDPDAPSRKNPVFREWHHWLIINISGQNVSSGTVLSDYIGSGQPKGTG 81
>sp|P31729|OV16_ONCVO OV-16 antigen OS=Onchocerca volvulus GN=OV16 PE=2 SV=2
Length = 197
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
M DPDAPSRK+ H+L+ NI G +V+ G +++DY G+ P KG+G
Sbjct: 96 MTDPDAPSRKNPVFREWHHWLIINISGQNVSSGTVLSDYIGSGPRKGTG 144
>sp|Q9D9G2|PEBP4_MOUSE Phosphatidylethanolamine-binding protein 4 OS=Mus musculus GN=Pebp4
PE=2 SV=1
Length = 242
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVN----KGHIIADYRGAMPPKGSGRTSSQWI 56
MVDPDAPSR + + H+LV NI G D+ +G++++DY PP +G Q+
Sbjct: 116 MVDPDAPSRSNPVMKYWRHWLVSNITGADMKSGSIRGNVLSDYSPPTPPPETGVHRYQFF 175
Query: 57 TEVK 60
++
Sbjct: 176 VYLQ 179
>sp|Q96S96|PEBP4_HUMAN Phosphatidylethanolamine-binding protein 4 OS=Homo sapiens GN=PEBP4
PE=1 SV=3
Length = 227
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHI----IADYRGAMPPKGSGRTSSQWI 56
MVDPDAPSR + + H+LV +I G D+ KG I ++ Y+ PP SG Q+
Sbjct: 94 MVDPDAPSRAEPRQRFWRHWLVTDIKGADLKKGKIQGQELSAYQAPSPPAHSGFHRYQFF 153
Query: 57 TEVKQ 61
+++
Sbjct: 154 VYLQE 158
>sp|Q06252|YL179_YEAST Uncharacterized protein YLR179C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YLR179C PE=1 SV=1
Length = 201
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNI-----PGHDV---NKGHIIADYRGAMPPKGSG 49
M DPDAPSR + K S + HY++ +I PG D+ KG + +Y G PPK SG
Sbjct: 77 MTDPDAPSRTEHKWSEVCHYIITDIPVEYGPGGDIAISGKGVVRNNYIGPGPPKNSG 133
>sp|P54190|TES26_TOXCA 26 kDa secreted antigen OS=Toxocara canis GN=TES-26 PE=2 SV=1
Length = 262
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
MVDPD PS + + LH+ V NIPG+++ G +A ++ + P +G
Sbjct: 157 MVDPDFPSAANGQQGQRLHWWVINIPGNNIAGGTTLAAFQPSTPAANTG 205
>sp|Q93WI9|HD3A_ORYSJ Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A
PE=1 SV=1
Length = 179
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHD-VNKGHIIADYRGAMPPKGSGR 50
MVDPDAPS D L LH+LV +IPG + G + Y P G R
Sbjct: 71 MVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMCYESPRPTMGIHR 121
>sp|Q5UR88|PEBPH_MIMIV Phosphatidylethanolamine-binding protein homolog R644
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R644 PE=1
SV=1
Length = 143
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
MVDPDAPSR++ LH L+ VN + ++ PPKGSG
Sbjct: 45 MVDPDAPSRENPIYKYFLHMLI-------VNNYQTLVSFQPPSPPKGSG 86
>sp|Q8VWH2|HD3B_ORYSJ Protein HEADING DATE 3B OS=Oryza sativa subsp. japonica GN=HD3B
PE=2 SV=1
Length = 178
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHD-VNKGHIIADYRGAMPPKGSGR 50
MVDPDAPS + L LH+LV +IPG G + Y P G R
Sbjct: 70 MVDPDAPSPSNPNLREYLHWLVTDIPGTTGATFGQEVMCYESPRPTMGIHR 120
>sp|Q9FIT4|BFT_ARATH Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=3
SV=1
Length = 177
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG-HDVNKGHIIADYRGAMPPKGSGR 50
M+DPDAPS + + LH++V +IPG D + G I Y P G R
Sbjct: 69 MMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIHR 119
>sp|Q9S7R5|TSF_ARATH Protein TWIN SISTER of FT OS=Arabidopsis thaliana GN=TSF PE=2 SV=1
Length = 175
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNK-GHIIADYRGAMPPKGSGRTSSQWITEV 59
MVDPD PS + LH+LV +IP N G+ + Y PP G R +
Sbjct: 69 MVDPDVPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRIV---LVLF 125
Query: 60 KQLG 63
+QLG
Sbjct: 126 RQLG 129
>sp|P93003|TFL1_ARATH Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1
Length = 177
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG-HDVNKGHIIADYRGAMPPKGSGR 50
M+DPD P D L LH++V NIPG D G + Y P G R
Sbjct: 72 MIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHR 122
>sp|Q9XFK7|MFT_ARATH Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1
SV=1
Length = 173
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIP-GHDVNKGHIIADYRGAMPPKGSGRTSSQWITE- 58
M DPDAPS + + +H++V +IP G + ++G I Y PP G R +
Sbjct: 67 MTDPDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHRYILVLFRQN 126
Query: 59 ------VKQLGNSGTINQSRAAGFFQPGVKVCHI 86
V+Q + + AG F G+ V +
Sbjct: 127 SPVGLMVQQPPSRANFSTRMFAGHFDLGLPVATV 160
>sp|P14306|CPYI_YEAST Carboxypeptidase Y inhibitor OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=TFS1 PE=1 SV=2
Length = 219
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 18/67 (26%)
Query: 1 MVDPDAPSRKDQKLSPILHYL-----VGNIPGHDVN------------KG-HIIADYRGA 42
M DPDAPS+ D K S H + + N H+ + KG + + +Y G
Sbjct: 93 MTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGP 152
Query: 43 MPPKGSG 49
PPKGSG
Sbjct: 153 APPKGSG 159
>sp|Q5RDL7|RM38_PONAB 39S ribosomal protein L38, mitochondrial OS=Pongo abelii GN=MRPL38
PE=2 SV=1
Length = 380
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 18 LHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
LH+L+ NIPG+ V +G + Y P +GSG
Sbjct: 233 LHWLLTNIPGNRVAEGQVTCPYLPPFPARGSG 264
>sp|Q96DV4|RM38_HUMAN 39S ribosomal protein L38, mitochondrial OS=Homo sapiens GN=MRPL38
PE=1 SV=2
Length = 380
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 18 LHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
LH+L+ NIPG+ V +G + Y P +GSG
Sbjct: 233 LHWLLTNIPGNRVAEGQVTCPYLPPFPARGSG 264
>sp|Q9SXZ2|FT_ARATH Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2
Length = 175
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHD-VNKGHIIADYRGAMPPKGSGRTSSQWITEV 59
MVDPD PS + L LH+LV +IP G+ I Y P G R
Sbjct: 69 MVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVV---FILF 125
Query: 60 KQLG 63
+QLG
Sbjct: 126 RQLG 129
>sp|Q9XH42|CET4_TOBAC CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1
Length = 175
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG-HDVNKGHIIADYRGAMPPKGSGR 50
M+DPD P D L LH++V +IPG D + G I Y P G R
Sbjct: 70 MIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREIVGYEMPRPNIGIHR 120
>sp|Q9XH43|CET2_TOBAC CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1
Length = 175
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG-HDVNKGHIIADYRGAMPPKGSGR 50
M+DPD P D L LH++V +IPG D + G I Y P G R
Sbjct: 70 MIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGKEIVGYEMPRPNIGIHR 120
>sp|O82088|SELFP_SOLLC Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1
Length = 175
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG-HDVNKGHIIADYRGAMPPKGSGR 50
M+DPD P D L LH++V +IPG D + G + Y P G R
Sbjct: 70 MIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREVVGYEMPRPNIGIHR 120
>sp|Q9ZNV5|CEN_ARATH Protein CENTRORADIALIS-like OS=Arabidopsis thaliana GN=CEN PE=2
SV=1
Length = 175
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG-HDVNKGHIIADYRGAMPPKGSGR 50
M DPD P D L LH++V +IPG DV+ G I Y P G R
Sbjct: 70 MTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHR 120
>sp|Q9XH44|CET1_TOBAC CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1
Length = 174
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGH-DVNKGHIIADYRGAMPPKGSGR 50
M DPD P D L LH++V +IPG D + G I Y P G R
Sbjct: 70 MTDPDVPGPSDPYLREHLHWIVTDIPGSTDSSFGREIVSYESPKPVIGIHR 120
>sp|Q3ZBF3|RM38_BOVIN 39S ribosomal protein L38, mitochondrial OS=Bos taurus GN=MRPL38
PE=1 SV=2
Length = 380
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 18 LHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG--RTSSQWITEVKQLGNSGTINQSRAAG 75
+H+LV NIPG V +G Y P +GSG R + + K + SG S
Sbjct: 233 VHWLVTNIPGSRVAEGEETCPYLPPFPARGSGFHRFAFLLFKQDKPVDFSGDTRPSPCYQ 292
Query: 76 FFQPGVKVCHIIADYRGAMPPKG 98
Q ++ AM P G
Sbjct: 293 LAQRTFHTFDFYKKHQDAMTPAG 315
>sp|Q41261|CEN_ANTMA Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN PE=1 SV=1
Length = 181
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG-HDVNKGHIIADYRGAMPPKGSGR 50
M DPD P D L LH++V +IPG D + G + Y P G R
Sbjct: 74 MTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHR 124
>sp|B3RAC1|Y6345_CUPTR UPF0317 protein RALTA_B1245 OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=RALTA_B1245 PE=3 SV=1
Length = 267
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 21 LVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWITEVKQLGNSGTI 68
L N+P +N G +A YR A+ + +GR S + + ++ L + I
Sbjct: 134 LAANVPLKHINLGRNVAMYRTAIETRPAGRLSGKLVVSMRPLKAADAI 181
>sp|Q2T7H3|TRUA_BURTA tRNA pseudouridine synthase A OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=truA
PE=3 SV=1
Length = 270
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 8 SRKDQKLSPILH-YLVGNIPGHDVNK---------GHIIADYRGAMPPKGSGRTSSQWIT 57
S + Q SP+ H Y +G P D H++ + G + G GR + W+
Sbjct: 157 SSECQAKSPVKHLYQIGIRPDGDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLA 216
Query: 58 EVKQLGNSGTINQSRAAGFFQPGVKVCHIIADYRGAMPPKGSGSI 102
EV + + G A F G+ + H+ A+PP GS+
Sbjct: 217 EVLESRDRGCA----APTFMPEGLYLAHVGYPAEFAVPPAQLGSV 257
>sp|Q63JL6|TRUA_BURPS tRNA pseudouridine synthase A OS=Burkholderia pseudomallei (strain
K96243) GN=truA PE=3 SV=1
Length = 271
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 8 SRKDQKLSPILH-YLVGNIPGHDVNK---------GHIIADYRGAMPPKGSGRTSSQWIT 57
S + Q SP+ H Y +G P D H++ + G + G GR S W+
Sbjct: 158 SSECQAKSPVKHLYQIGIRPDGDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLA 217
Query: 58 EVKQLGNSGTINQSRAAGFFQP-GVKVCHIIADYRGAMPPKGSGSI 102
EV + + ++ AA F P G+ + H+ A+PP GS+
Sbjct: 218 EVLE-----SRDRDCAAPTFMPEGLYLAHVGYPAEFAVPPAQLGSV 258
>sp|A2S134|TRUA_BURM9 tRNA pseudouridine synthase A OS=Burkholderia mallei (strain NCTC
10229) GN=truA PE=3 SV=1
Length = 271
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 8 SRKDQKLSPILH-YLVGNIPGHDVNK---------GHIIADYRGAMPPKGSGRTSSQWIT 57
S + Q SP+ H Y +G P D H++ + G + G GR S W+
Sbjct: 158 SSECQAKSPVKHLYQIGIRPDGDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLA 217
Query: 58 EVKQLGNSGTINQSRAAGFFQP-GVKVCHIIADYRGAMPPKGSGSI 102
EV + + ++ AA F P G+ + H+ A+PP GS+
Sbjct: 218 EVLE-----SRDRDCAAPTFMPEGLYLAHVGYPAEFAVPPAQLGSV 258
>sp|A3MBU2|TRUA_BURM7 tRNA pseudouridine synthase A OS=Burkholderia mallei (strain NCTC
10247) GN=truA PE=3 SV=1
Length = 271
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 8 SRKDQKLSPILH-YLVGNIPGHDVNK---------GHIIADYRGAMPPKGSGRTSSQWIT 57
S + Q SP+ H Y +G P D H++ + G + G GR S W+
Sbjct: 158 SSECQAKSPVKHLYQIGIRPDGDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLA 217
Query: 58 EVKQLGNSGTINQSRAAGFFQP-GVKVCHIIADYRGAMPPKGSGSI 102
EV + + ++ AA F P G+ + H+ A+PP GS+
Sbjct: 218 EVLE-----SRDRDCAAPTFMPEGLYLAHVGYPAEFAVPPAQLGSV 258
>sp|A3NM70|TRUA_BURP6 tRNA pseudouridine synthase A OS=Burkholderia pseudomallei (strain
668) GN=truA PE=3 SV=1
Length = 270
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 8 SRKDQKLSPILH-YLVGNIPGHDVNK---------GHIIADYRGAMPPKGSGRTSSQWIT 57
S + Q SP+ H Y +G P D H++ + G + G GR S W+
Sbjct: 157 SSECQAKSPVKHLYQIGIRPDGDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLA 216
Query: 58 EVKQLGNSGTINQSRAAGFFQP-GVKVCHIIADYRGAMPPKGSGSI 102
EV + + ++ AA F P G+ + H+ A+PP GS+
Sbjct: 217 EVLE-----SRDRDCAAPTFMPEGLYLAHVGYPAEFAVPPAQLGSV 257
>sp|Q3JKH3|TRUA_BURP1 tRNA pseudouridine synthase A OS=Burkholderia pseudomallei (strain
1710b) GN=truA PE=3 SV=1
Length = 270
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 8 SRKDQKLSPILH-YLVGNIPGHDVNK---------GHIIADYRGAMPPKGSGRTSSQWIT 57
S + Q SP+ H Y +G P D H++ + G + G GR S W+
Sbjct: 157 SSECQAKSPVKHLYQIGIRPDGDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLA 216
Query: 58 EVKQLGNSGTINQSRAAGFFQP-GVKVCHIIADYRGAMPPKGSGSI 102
EV + + ++ AA F P G+ + H+ A+PP GS+
Sbjct: 217 EVLE-----SRDRDCAAPTFMPEGLYLAHVGYPAEFAVPPAQLGSV 257
>sp|A3P7N2|TRUA_BURP0 tRNA pseudouridine synthase A OS=Burkholderia pseudomallei (strain
1106a) GN=truA PE=3 SV=1
Length = 270
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 8 SRKDQKLSPILH-YLVGNIPGHDVNK---------GHIIADYRGAMPPKGSGRTSSQWIT 57
S + Q SP+ H Y +G P D H++ + G + G GR S W+
Sbjct: 157 SSECQAKSPVKHLYQIGIRPDGDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLA 216
Query: 58 EVKQLGNSGTINQSRAAGFFQP-GVKVCHIIADYRGAMPPKGSGSI 102
EV + + ++ AA F P G+ + H+ A+PP GS+
Sbjct: 217 EVLE-----SRDRDCAAPTFMPEGLYLAHVGYPAEFAVPPAQLGSV 257
>sp|A1UZ38|TRUA_BURMS tRNA pseudouridine synthase A OS=Burkholderia mallei (strain SAVP1)
GN=truA PE=3 SV=1
Length = 270
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 8 SRKDQKLSPILH-YLVGNIPGHDVNK---------GHIIADYRGAMPPKGSGRTSSQWIT 57
S + Q SP+ H Y +G P D H++ + G + G GR S W+
Sbjct: 157 SSECQAKSPVKHLYQIGIRPDGDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLA 216
Query: 58 EVKQLGNSGTINQSRAAGFFQP-GVKVCHIIADYRGAMPPKGSGSI 102
EV + + ++ AA F P G+ + H+ A+PP GS+
Sbjct: 217 EVLE-----SRDRDCAAPTFMPEGLYLAHVGYPAEFAVPPAQLGSV 257
>sp|Q62AJ2|TRUA_BURMA tRNA pseudouridine synthase A OS=Burkholderia mallei (strain ATCC
23344) GN=truA PE=3 SV=1
Length = 270
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 8 SRKDQKLSPILH-YLVGNIPGHDVNK---------GHIIADYRGAMPPKGSGRTSSQWIT 57
S + Q SP+ H Y +G P D H++ + G + G GR S W+
Sbjct: 157 SSECQAKSPVKHLYQIGIRPDGDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLA 216
Query: 58 EVKQLGNSGTINQSRAAGFFQP-GVKVCHIIADYRGAMPPKGSGSI 102
EV + + ++ AA F P G+ + H+ A+PP GS+
Sbjct: 217 EVLE-----SRDRDCAAPTFMPEGLYLAHVGYPAEFAVPPAQLGSV 257
>sp|Q27549|ACSA_CRYPV Acetyl-coenzyme A synthetase OS=Cryptosporidium parvum GN=ACS PE=3
SV=1
Length = 694
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 49 GRTSSQWITEVKQLGNSGTINQSRAAGFFQPGVKVCHIIADYRGAMPPKGSGSILKGPVP 108
R +W+ + ++ +SGT Q R A F + VC D + P + I +G P
Sbjct: 81 ARKELRWLRDFTKVRSSGTCLQDRLAWFLNGKLNVCDNCVDRWAEIQPNTTALIWEGDDP 140
Query: 109 N 109
+
Sbjct: 141 S 141
>sp|Q5PQN9|RM38_RAT 39S ribosomal protein L38, mitochondrial OS=Rattus norvegicus
GN=Mrpl38 PE=2 SV=2
Length = 380
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 18 LHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
LH+LV NIP + V +G Y P +GSG
Sbjct: 233 LHWLVTNIPSNRVAEGQESCPYLPPFPARGSG 264
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,470,295
Number of Sequences: 539616
Number of extensions: 1985624
Number of successful extensions: 2786
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2728
Number of HSP's gapped (non-prelim): 78
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)