Query psy6923
Match_columns 113
No_of_seqs 151 out of 1115
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 21:54:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3346|consensus 100.0 1.6E-32 3.4E-37 203.1 8.7 95 1-99 70-165 (185)
2 cd00866 PEBP_euk PhosphatidylE 99.9 4.1E-27 8.8E-32 167.6 9.2 97 1-98 46-149 (154)
3 PLN00169 CETS family protein; 99.9 9E-27 1.9E-31 171.3 8.8 90 1-98 69-159 (175)
4 PF01161 PBP: Phosphatidyletha 99.8 2.6E-21 5.6E-26 136.5 4.7 85 1-93 40-136 (146)
5 cd00457 PEBP PhosphatidylEthan 99.8 1.3E-19 2.9E-24 130.9 6.8 82 1-92 45-149 (159)
6 cd00865 PEBP_bact_arch Phospha 99.6 1.2E-14 2.6E-19 103.9 7.8 75 1-92 46-138 (150)
7 COG1881 Phospholipid-binding p 99.5 1.8E-14 3.8E-19 106.1 7.5 58 1-65 67-141 (174)
8 PRK09818 putative kinase inhib 99.5 1.3E-14 2.9E-19 107.5 5.7 56 1-62 71-147 (183)
9 PRK10257 putative kinase inhib 99.5 2E-14 4.3E-19 104.4 6.3 56 1-63 50-125 (158)
10 TIGR00481 Raf kinase inhibitor 99.5 1.4E-13 3E-18 98.1 7.6 74 1-92 34-129 (141)
11 PLN03213 repressor of silencin 28.5 37 0.00081 29.6 1.7 24 40-64 130-153 (759)
12 PRK14751 tetracycline resistan 21.7 63 0.0014 16.7 1.2 12 10-21 10-21 (28)
No 1
>KOG3346|consensus
Probab=99.98 E-value=1.6e-32 Score=203.14 Aligned_cols=95 Identities=36% Similarity=0.605 Sum_probs=87.2
Q ss_pred CcCCCCCCCCCCCCCCeEEEEEeCcCCCC-CCCCceeecccCCCCCCCCCCCcEEEEEeeeecCCCCCcccccccCCCCC
Q psy6923 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHD-VNKGHIIADYRGAMPPKGSGRTSSQWITEVKQLGNSGTINQSRAAGFFQP 79 (113)
Q Consensus 1 mvDPDaP~~~~~~~~~~lHwlv~nI~~~~-~~~g~~~~~Y~gP~Pp~g~g~HRY~f~lyf~Q~~~~~~~~~~r~~~~~R~ 79 (113)
|+|||||+++++++++|||||++|||+.+ ++.|+++++|+||.|++|+|.|||+|+|| +|+.+.....+ ....|.
T Consensus 70 m~DPDaPsr~~p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~-rQ~~~~~~~~~---~~~~R~ 145 (185)
T KOG3346|consen 70 MTDPDAPSRSDPKFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLY-RQPGRLDSDEP---SPLSRG 145 (185)
T ss_pred EeCCCCCCCCCCcceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEE-EcCCccccccC---CCCccc
Confidence 89999999999999999999999999997 99999999999999999999999999995 99999744332 357899
Q ss_pred CcCHhHHHHHHcCCCCCCCC
Q psy6923 80 GVKVCHIIADYRGAMPPKGS 99 (113)
Q Consensus 80 ~F~vr~F~~k~~~~~~~~G~ 99 (113)
+|++++|+++|.+..|.||-
T Consensus 146 ~F~~~~F~~~~~lg~PvA~~ 165 (185)
T KOG3346|consen 146 NFNTRKFAKKYELGTPVAGN 165 (185)
T ss_pred ceeHHHHHHHhccCCchhhh
Confidence 99999999999999998874
No 2
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=99.94 E-value=4.1e-27 Score=167.63 Aligned_cols=97 Identities=38% Similarity=0.600 Sum_probs=82.8
Q ss_pred CcCCCCCCCCCCCCCCeEEEEEeCcCCCC-----CCCCceeecccCCCCCCCCCCCcEEEEEeeeecCCCCCccccc--c
Q psy6923 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHD-----VNKGHIIADYRGAMPPKGSGRTSSQWITEVKQLGNSGTINQSR--A 73 (113)
Q Consensus 1 mvDPDaP~~~~~~~~~~lHwlv~nI~~~~-----~~~g~~~~~Y~gP~Pp~g~g~HRY~f~lyf~Q~~~~~~~~~~r--~ 73 (113)
|+|||+|.+.++.++++||||++||+++. ...+..+++|+||+|++|+|+|||+|+|| +|+..+....... .
T Consensus 46 m~DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~~~~~~~~~Y~~P~Pp~g~g~HRY~fll~-~q~~~~~~~~~~~~~~ 124 (154)
T cd00866 46 MVDPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLVSKGEVLVPYLGPGPPKGTGPHRYVFLLF-KQPGGLDFPESKLPPT 124 (154)
T ss_pred EECCCCCCCCCCCCCCEEEEEEeCcCCccccccccCCCCCcceeeCCCCCCCCCCccEEEEEE-EeCCccCccccccccC
Confidence 89999999999999999999999999885 45678899999999999999999999995 9998873222111 3
Q ss_pred cCCCCCCcCHhHHHHHHcCCCCCCC
Q psy6923 74 AGFFQPGVKVCHIIADYRGAMPPKG 98 (113)
Q Consensus 74 ~~~~R~~F~vr~F~~k~~~~~~~~G 98 (113)
....|.+|++++|++++++..|.++
T Consensus 125 ~~~~r~~F~~~~F~~~~~L~~pva~ 149 (154)
T cd00866 125 SGLGRRGFDVREFAKKNGLGLPVAA 149 (154)
T ss_pred CccccCCcCHHHHHHHhCCCCcEEE
Confidence 4568999999999999999887554
No 3
>PLN00169 CETS family protein; Provisional
Probab=99.94 E-value=9e-27 Score=171.33 Aligned_cols=90 Identities=28% Similarity=0.435 Sum_probs=77.8
Q ss_pred CcCCCCCCCCCCCCCCeEEEEEeCcCCCC-CCCCceeecccCCCCCCCCCCCcEEEEEeeeecCCCCCcccccccCCCCC
Q psy6923 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHD-VNKGHIIADYRGAMPPKGSGRTSSQWITEVKQLGNSGTINQSRAAGFFQP 79 (113)
Q Consensus 1 mvDPDaP~~~~~~~~~~lHwlv~nI~~~~-~~~g~~~~~Y~gP~Pp~g~g~HRY~f~lyf~Q~~~~~~~~~~r~~~~~R~ 79 (113)
|+|||+|++.++++++|+||+++||+++. ...|+++++|+||+|+ +|+|||+|+|| +|++++. .. ...+|.
T Consensus 69 m~DpDaP~~~~~~~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp--~G~HRYvflly-~Q~~~~~-~~----~~~~R~ 140 (175)
T PLN00169 69 MVDPDAPSPSNPNLREYLHWLVTDIPATTGATFGQEVVCYESPRPT--AGIHRFVFVLF-RQLGRQT-VY----APGWRQ 140 (175)
T ss_pred EECCCCCCCCCCCcccEEEEEEeCCccccccccCccceeecCCCCC--CCceeEEEEEE-EcCCCcc-cC----CcccCC
Confidence 89999999999999999999999999884 4678899999999998 46899999995 9998762 11 134799
Q ss_pred CcCHhHHHHHHcCCCCCCC
Q psy6923 80 GVKVCHIIADYRGAMPPKG 98 (113)
Q Consensus 80 ~F~vr~F~~k~~~~~~~~G 98 (113)
+|++++|++||++..|.||
T Consensus 141 ~F~~~~Fa~~~~L~~PvA~ 159 (175)
T PLN00169 141 NFNTRDFAELYNLGSPVAA 159 (175)
T ss_pred CcCHHHHHHHhCCCCceEE
Confidence 9999999999999877765
No 4
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.83 E-value=2.6e-21 Score=136.49 Aligned_cols=85 Identities=36% Similarity=0.609 Sum_probs=64.3
Q ss_pred CcCCCCCCCCCCCCCCeEEEEEeCcC---------C--CCCC-CCceeecccCCCCCCCCCCCcEEEEEeeeecCCCCCc
Q psy6923 1 MVDPDAPSRKDQKLSPILHYLVGNIP---------G--HDVN-KGHIIADYRGAMPPKGSGRTSSQWITEVKQLGNSGTI 68 (113)
Q Consensus 1 mvDPDaP~~~~~~~~~~lHwlv~nI~---------~--~~~~-~g~~~~~Y~gP~Pp~g~g~HRY~f~lyf~Q~~~~~~~ 68 (113)
|+|||+|++.+++.++++|||++||+ . ...+ .|+.+++|.||+|++|+|.|||+|+|| +|+... .+
T Consensus 40 m~D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~~~~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly-~q~~~~-~l 117 (146)
T PF01161_consen 40 MVDPDAPSRENPSFGPFLHWLVTNIPSTELPEGSDGARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLY-AQPSPL-PL 117 (146)
T ss_dssp EEETTSSBTTSCTTTSEEEEEEEEEETSEE-TTSSTCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEE-EESSSS-TS
T ss_pred EECCCCCccccCCCCcEEEEEEcCCCCccCCCCCCccEecccccCccccEEcCCcCcCcCCCceEEEEEE-EcCCCC-CC
Confidence 89999999999999999999999999 1 0122 266789999999999999999999995 999964 22
Q ss_pred ccccccCCCCCCcCHhHHHHHHcCC
Q psy6923 69 NQSRAAGFFQPGVKVCHIIADYRGA 93 (113)
Q Consensus 69 ~~~r~~~~~R~~F~vr~F~~k~~~~ 93 (113)
.. ....++++++.++|.+.
T Consensus 118 ~~------~~~~~~~~~~~~~~~L~ 136 (146)
T PF01161_consen 118 SD------GATKFDLREAFKGHGLG 136 (146)
T ss_dssp GB------SSTHHTHHHHHHHTTEE
T ss_pred CC------CCCHHHHHHHHHcCCCC
Confidence 22 33446788887776654
No 5
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.79 E-value=1.3e-19 Score=130.90 Aligned_cols=82 Identities=27% Similarity=0.291 Sum_probs=63.4
Q ss_pred CcCCCCCCCCCCCCCCeEEEEEeCcCCCC--CC-----------CCce----------eecccCCCCCCCCCCCcEEEEE
Q psy6923 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHD--VN-----------KGHI----------IADYRGAMPPKGSGRTSSQWIT 57 (113)
Q Consensus 1 mvDPDaP~~~~~~~~~~lHwlv~nI~~~~--~~-----------~g~~----------~~~Y~gP~Pp~g~g~HRY~f~l 57 (113)
|+|||+|.. ++|+||+++||+++. +. .+.. ..+|.||+||+|++.|||+|+|
T Consensus 45 ~~DpDap~~-----~~~~HWvv~nIp~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~l 119 (159)
T cd00457 45 MEDPDAPLG-----RPIVHGLVYGIPANKTSLSNDDFVVTDNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQV 119 (159)
T ss_pred EECCCCCCC-----CCceEEEEeccCcccccccccccccCCCCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEE
Confidence 789999943 489999999999873 11 1111 3499999999999999999999
Q ss_pred eeeecCCCCCcccccccCCCCCCcCHhHHHHHHcC
Q psy6923 58 EVKQLGNSGTINQSRAAGFFQPGVKVCHIIADYRG 92 (113)
Q Consensus 58 yf~Q~~~~~~~~~~r~~~~~R~~F~vr~F~~k~~~ 92 (113)
| +|+.... ..+ ....|..|++++|+++|.+
T Consensus 120 y-ald~~~~-~~~---~~~~~~~~~~~~~~~~~vL 149 (159)
T cd00457 120 Y-ALDEPLD-RSK---LGDGRTKFEVARFAEGNVL 149 (159)
T ss_pred E-EecCccc-ccc---ccCCCCHHHHHHHHHhCee
Confidence 6 9997752 111 1347888999999999876
No 6
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.56 E-value=1.2e-14 Score=103.92 Aligned_cols=75 Identities=27% Similarity=0.448 Sum_probs=57.4
Q ss_pred CcCCCCCCCCCCCCCCeEEEEEeCcCCC--CCCCCc----------------eeecccCCCCCCCCCCCcEEEEEeeeec
Q psy6923 1 MVDPDAPSRKDQKLSPILHYLVGNIPGH--DVNKGH----------------IIADYRGAMPPKGSGRTSSQWITEVKQL 62 (113)
Q Consensus 1 mvDPDaP~~~~~~~~~~lHwlv~nI~~~--~~~~g~----------------~~~~Y~gP~Pp~g~g~HRY~f~lyf~Q~ 62 (113)
|+|||+|.. .+|+||+++||+++ .+..|. ....|.|||||. ++.|||+|.|| .+.
T Consensus 46 m~D~Dap~~-----~~~~HW~~~nIp~~~~~i~~g~~~~~~~~~~~~g~n~~~~~~Y~gP~Pp~-~~~HrY~f~vy-Ald 118 (150)
T cd00865 46 VEDPDAPTG-----GGFVHWVVWNIPADTTELPEGASRGALPAGAVQGRNDFGEAGYGGPCPPD-GGPHRYVFTVY-ALD 118 (150)
T ss_pred EEcCCCCCC-----CCEEEEEEeccCcccccccCCcccccCCCCCeEeecCCCCCeecCCCCcC-CCceEEEEEEE-EeC
Confidence 799999933 48999999999986 333221 367999999999 78999999996 888
Q ss_pred CCCCCcccccccCCCCCCcCHhHHHHHHcC
Q psy6923 63 GNSGTINQSRAAGFFQPGVKVCHIIADYRG 92 (113)
Q Consensus 63 ~~~~~~~~~r~~~~~R~~F~vr~F~~k~~~ 92 (113)
..+.. ..++...++.++-++
T Consensus 119 ~~l~~----------~~~~~~~~l~~ai~~ 138 (150)
T cd00865 119 VPLLL----------PPGATRAELLFAMKG 138 (150)
T ss_pred CccCC----------CCCCCHHHHHHHHhh
Confidence 76521 256777888777654
No 7
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.54 E-value=1.8e-14 Score=106.13 Aligned_cols=58 Identities=31% Similarity=0.518 Sum_probs=45.1
Q ss_pred CcCCCCCCCCCCCCCCeEEEEEeCcCCC--CCCC--------C-------ceeecccCCCCCCCCCCCcEEEEEeeeecC
Q psy6923 1 MVDPDAPSRKDQKLSPILHYLVGNIPGH--DVNK--------G-------HIIADYRGAMPPKGSGRTSSQWITEVKQLG 63 (113)
Q Consensus 1 mvDPDaP~~~~~~~~~~lHwlv~nI~~~--~~~~--------g-------~~~~~Y~gP~Pp~g~g~HRY~f~lyf~Q~~ 63 (113)
|.|||||... .|+||+++||++. .+.. | .....|.|||||+|++ |||+|.|| .++-
T Consensus 67 v~DpDAP~g~-----~~~HWvv~nIp~~~~~~~~~~~~~~~~~~~qg~Nd~g~~~Y~Gp~PP~g~~-HrY~f~vy-ALd~ 139 (174)
T COG1881 67 VDDPDAPTGG-----GWVHWVVANIPADVTELPEGSGPKSKIGIVQGINDFGSRGYGGPCPPKGHG-HRYYFTVY-ALDV 139 (174)
T ss_pred EECCCCCCCC-----cEEEEEEEccCCcccccccccccccccceEEeeccccccCcccCCCCCCCC-eEEEEEEE-Eccc
Confidence 6899999854 8999999999984 1111 1 1245699999999998 99999997 7766
Q ss_pred CC
Q psy6923 64 NS 65 (113)
Q Consensus 64 ~~ 65 (113)
..
T Consensus 140 ~~ 141 (174)
T COG1881 140 EL 141 (174)
T ss_pred cc
Confidence 43
No 8
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.53 E-value=1.3e-14 Score=107.49 Aligned_cols=56 Identities=34% Similarity=0.493 Sum_probs=44.5
Q ss_pred CcCCCCCCCCCCCCCCeEEEEEeCcCCC--CCC------------CCc-------eeecccCCCCCCCCCCCcEEEEEee
Q psy6923 1 MVDPDAPSRKDQKLSPILHYLVGNIPGH--DVN------------KGH-------IIADYRGAMPPKGSGRTSSQWITEV 59 (113)
Q Consensus 1 mvDPDaP~~~~~~~~~~lHwlv~nI~~~--~~~------------~g~-------~~~~Y~gP~Pp~g~g~HRY~f~lyf 59 (113)
|.|||+|... .|+||+++|||++ .+. .|. ....|.|||||.|++.|||+|.||
T Consensus 71 ~~DpDaP~g~-----~~~HWvv~nIP~~~~~l~eg~~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vy- 144 (183)
T PRK09818 71 VYDPDAPTGS-----GWWHWTVANIPATVTYLPADAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVW- 144 (183)
T ss_pred EECCCCCCCC-----cEEEEEEEcCCCCccccCCCCcccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEE-
Confidence 6899999764 6999999999986 111 121 145899999999999999999997
Q ss_pred eec
Q psy6923 60 KQL 62 (113)
Q Consensus 60 ~Q~ 62 (113)
.-.
T Consensus 145 ALd 147 (183)
T PRK09818 145 ALK 147 (183)
T ss_pred Eec
Confidence 655
No 9
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.52 E-value=2e-14 Score=104.36 Aligned_cols=56 Identities=32% Similarity=0.468 Sum_probs=44.3
Q ss_pred CcCCCCCCCCCCCCCCeEEEEEeCcCCC--CCCC-----------Cc-------eeecccCCCCCCCCCCCcEEEEEeee
Q psy6923 1 MVDPDAPSRKDQKLSPILHYLVGNIPGH--DVNK-----------GH-------IIADYRGAMPPKGSGRTSSQWITEVK 60 (113)
Q Consensus 1 mvDPDaP~~~~~~~~~~lHwlv~nI~~~--~~~~-----------g~-------~~~~Y~gP~Pp~g~g~HRY~f~lyf~ 60 (113)
|+|||+|... .|+||+++|||++ .+.+ |. ....|.|||||.|. .|||+|.|| .
T Consensus 50 ~~DpDap~~~-----~~~HWvv~nIP~~~~~l~eg~~~~~~~~p~g~~~g~n~~g~~gY~GP~PP~g~-~HrY~f~vy-A 122 (158)
T PRK10257 50 CYDPDAPTGS-----GWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYGGAAPPKGE-THRYIFTVH-A 122 (158)
T ss_pred EECCCCCCCC-----cEEEEEEEcCCCCcccccCCCCcccccCCCCceeccccCCCccCcCCCCccCC-CceEEEEEE-E
Confidence 7899999754 7999999999986 1211 21 15689999999997 699999997 8
Q ss_pred ecC
Q psy6923 61 QLG 63 (113)
Q Consensus 61 Q~~ 63 (113)
+.-
T Consensus 123 Ld~ 125 (158)
T PRK10257 123 LDV 125 (158)
T ss_pred ecC
Confidence 873
No 10
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.48 E-value=1.4e-13 Score=98.10 Aligned_cols=74 Identities=27% Similarity=0.435 Sum_probs=53.1
Q ss_pred CcCCCCCCCCCCCCCCeEEEEEeCcCCC--CC----C-------CCc--------eeecccCCCCCCCCCCCcEEEEEee
Q psy6923 1 MVDPDAPSRKDQKLSPILHYLVGNIPGH--DV----N-------KGH--------IIADYRGAMPPKGSGRTSSQWITEV 59 (113)
Q Consensus 1 mvDPDaP~~~~~~~~~~lHwlv~nI~~~--~~----~-------~g~--------~~~~Y~gP~Pp~g~g~HRY~f~lyf 59 (113)
|+|||+|... .|+||+++|||++ .+ . .|. ....|.|||||.|+ |||+|.||
T Consensus 34 ~~D~Dap~~~-----~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~~Y~GP~PP~g~--HrY~f~vy- 105 (141)
T TIGR00481 34 CIDPDAPTGC-----GWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKSGYIGPCPPKGD--HRYLFTVY- 105 (141)
T ss_pred EECCCCCCCC-----CeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCccEeCCCCcCCC--EEEEEEEE-
Confidence 7899999765 4999999999985 22 1 120 15689999999986 99999997
Q ss_pred eecCC-CCCcccccccCCCCCCcCHhHHHHHHcC
Q psy6923 60 KQLGN-SGTINQSRAAGFFQPGVKVCHIIADYRG 92 (113)
Q Consensus 60 ~Q~~~-~~~~~~~r~~~~~R~~F~vr~F~~k~~~ 92 (113)
..+.. + .+ . .++...++.+.-++
T Consensus 106 ALd~~~l-~l--------~-~~~~~~~l~~ai~g 129 (141)
T TIGR00481 106 ALDTEKL-DL--------D-PGFSLADLGDAMEG 129 (141)
T ss_pred EecCCCC-CC--------C-CCCCHHHHHHHHhh
Confidence 77654 3 11 1 35677777766553
No 11
>PLN03213 repressor of silencing 3; Provisional
Probab=28.48 E-value=37 Score=29.65 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=18.7
Q ss_pred cCCCCCCCCCCCcEEEEEeeeecCC
Q psy6923 40 RGAMPPKGSGRTSSQWITEVKQLGN 64 (113)
Q Consensus 40 ~gP~Pp~g~g~HRY~f~lyf~Q~~~ 64 (113)
+-+.|-.|+|.|+|.|.=. +-+..
T Consensus 130 vKslPfsGTGKHkYSFr~i-eVp~s 153 (759)
T PLN03213 130 VKAMPLSGTGKHKYSFQRV-PLSSS 153 (759)
T ss_pred ccccccCCCccceeeeeec-cCCCC
Confidence 4477999999999999884 65533
No 12
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=21.75 E-value=63 Score=16.73 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=8.9
Q ss_pred CCCCCCCeEEEE
Q psy6923 10 KDQKLSPILHYL 21 (113)
Q Consensus 10 ~~~~~~~~lHwl 21 (113)
.+|+.+..+||=
T Consensus 10 ~~psdksi~hwd 21 (28)
T PRK14751 10 KNPSDKSIYHWD 21 (28)
T ss_pred cCCCcCceeeee
Confidence 456677899994
Done!