RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6923
(113 letters)
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI,
protein structure initiative; HET: MSE; 1.30A
{Plasmodium vivax} PDB: 2r77_A
Length = 200
Score = 62.7 bits (152), Expect = 1e-13
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKG-----HIIADYRGAMPPKGSG 49
M+DPD PSR+ +H+ V I ++ KG + Y G KG+G
Sbjct: 83 MIDPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTG 136
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase
inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A*
1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Length = 190
Score = 56.6 bits (136), Expect = 3e-11
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
+ DPDAPSRKD K H+LV N+ G+D++ G ++++Y G+ PPK +G
Sbjct: 71 LTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTG 119
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine
proteinase inhibitor, Pro inhibitor complex; HET: NAG
NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Length = 220
Score = 51.2 bits (122), Expect = 3e-09
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 18/67 (26%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG------------------HDVNKGHIIADYRGA 42
M DPDAPS+ D K S H + ++ + + + +Y G
Sbjct: 94 MTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGP 153
Query: 43 MPPKGSG 49
PPKGSG
Sbjct: 154 APPKGSG 160
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical
shift variations, titration, unknown function; NMR
{Drosophila melanogaster}
Length = 179
Score = 48.4 bits (115), Expect = 3e-08
Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG--HDVNKGHIIADYRGAMPPKGSG 49
MVDPDAP+R+D K ILH+ V NIPG + + GH +ADY G+ PPK +G
Sbjct: 60 MVDPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTG 110
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein;
1.80A {Arabidopsis thaliana} PDB: 1qou_A
Length = 180
Score = 44.9 bits (106), Expect = 5e-07
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGH-DVNKGHIIADYRGAMPPKGSGR 50
M+DPD P D L LH++V NIPG D G + Y P G R
Sbjct: 75 MIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHR 125
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein,
14-3-3 protein, BZ protein, floral induction; HET: SEP;
2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Length = 170
Score = 43.4 bits (102), Expect = 2e-06
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIP-GHDVNKGHIIADYRGAMPPKGSGRT 51
MVDPDAPS D L LH+LV +IP + G + Y P G R
Sbjct: 71 MVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRL 122
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic
homolog RAF kinase inhibitor protein (RKIP). csgid
structural genomics; 1.25A {Chlamydia trachomatis}
Length = 153
Score = 29.6 bits (67), Expect = 0.12
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 14/60 (23%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPG------HDVNKGHI-------IADYRGAMPPKG 47
+ DPD P ++ +H++V N+ + Y PP
Sbjct: 48 VEDPDVPPSV-REDGLWIHWIVYNLSPVVSNLAEGAQIFAVQGLNTAGEIGYCPPCPPDA 106
>3bl2_A V-BCL-2; protein-protein complex, viral BCL-2, apoptosis,
autophagy, antiviral defense, coiled coil, cytoplasm,
golgi apparatus, membrane; 2.30A {Murid herpesvirus 4}
SCOP: f.1.4.1 PDB: 3dvu_A 2abo_A
Length = 131
Score = 29.0 bits (64), Expect = 0.21
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 39 YRGAMPPKGSGRTSSQWITEVKQLGNS---GTINQSRAAGFFQPGVKVCH 85
YR P W ++ +L S IN R GFF G VC
Sbjct: 52 YRADYGP-----ALKNWKRDLSKLFTSLFVDVINSGRIVGFFDVGRYVCE 96
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta
protein, unknown function; 1.81A {Escherichia coli}
SCOP: b.17.1.2
Length = 166
Score = 27.4 bits (61), Expect = 0.89
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 26/70 (37%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNI--------------PGHDVNKGHI-------IADY 39
+ DPDAP+ S H+ V NI G + G + A +
Sbjct: 52 VYDPDAPTG-----SGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGF 106
Query: 40 RGAMPPKGSG 49
GA PPKG
Sbjct: 107 GGACPPKGDK 116
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer,
structural genomics, PSI, prote structure initiative;
HET: MSE; 2.59A {Helicobacter pylori}
Length = 207
Score = 25.7 bits (56), Expect = 3.8
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 21/98 (21%)
Query: 1 MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWITEVK 60
++D DA P +H++VGNI + + + + + + V
Sbjct: 78 LIDHDAQKVCG---MPFVHWVVGNIAHN--------------VLEENASMMDKRIVQGVN 120
Query: 61 QLGNSGTINQSRAAGFFQPGVKVCHIIADYRGAMPPKG 98
L + + + + Y G MPP G
Sbjct: 121 SLTQGFIRSPLNESEKQRSNLNNSV----YIGPMPPNG 154
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 25.1 bits (56), Expect = 6.4
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 17 ILHYLVGNIPG 27
L Y V N+P
Sbjct: 293 TLFYCVANMPA 303
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 25.1 bits (56), Expect = 6.5
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 17 ILHYLVGNIPG 27
++HY V N+PG
Sbjct: 292 VVHYGVPNMPG 302
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 25.1 bits (56), Expect = 6.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 17 ILHYLVGNIPG 27
++HY V N+PG
Sbjct: 291 VVHYGVANMPG 301
>2ope_A PILX; type IV pilin, minor pilin, bacterial pathogenesis, adhesion,
aggregation, filament, cell adhesion; 2.40A {Neisseria
meningitidis} PDB: 2opd_A
Length = 128
Score = 24.5 bits (52), Expect = 7.4
Identities = 16/66 (24%), Positives = 23/66 (34%)
Query: 24 NIPGHDVNKGHIIADYRGAMPPKGSGRTSSQWITEVKQLGNSGTINQSRAAGFFQPGVKV 83
N+ H VNK A +P G+G T S W+ V +RA
Sbjct: 60 NVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSSDVG 119
Query: 84 CHIIAD 89
C ++
Sbjct: 120 CEAFSN 125
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 24.7 bits (54), Expect = 7.5
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 17 ILHYLVGNIPG 27
I L +PG
Sbjct: 262 IKALLAPGLPG 272
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.137 0.419
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,824,285
Number of extensions: 98447
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 17
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.4 bits)