RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6923
         (113 letters)



>d1a44a_ b.17.1.1 (A:) Phosphatidylethanolamine binding protein,
           PEBP {Cow (Bos taurus) [TaxId: 9913]}
          Length = 185

 Score = 62.7 bits (152), Expect = 5e-14
 Identities = 24/49 (48%), Positives = 36/49 (73%)

Query: 1   MVDPDAPSRKDQKLSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGSG 49
           + DPDAPSRKD K     H+LV N+ G++++ G +++DY G+ PPKG+G
Sbjct: 67  LTDPDAPSRKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTG 115


>d1qoua_ b.17.1.1 (A:) Centroradialis protein Cen {Garden snapdragon
           (Antirrhinum majus) [TaxId: 4151]}
          Length = 164

 Score = 53.1 bits (127), Expect = 1e-10
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 1   MVDPDAPSRKDQKLSPILHYLVGNIPG-HDVNKGHIIADYRGAMPPKGSGR 50
           M DPD P   D  L   LH++V +IPG  D + G  +  Y    P  G  R
Sbjct: 62  MTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHR 112


>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 219

 Score = 51.7 bits (123), Expect = 9e-10
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 18/68 (26%)

Query: 1   MVDPDAPSRKDQKLSPILHYLVGNIP------------------GHDVNKGHIIADYRGA 42
           M DPDAPS+ D K S   H +  ++                     +    + + +Y G 
Sbjct: 93  MTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGP 152

Query: 43  MPPKGSGR 50
            PPKGSG 
Sbjct: 153 APPKGSGP 160


>d1fuxa_ b.17.1.2 (A:) Hypothetical protein YbcL {Escherichia coli
           [TaxId: 562]}
          Length = 165

 Score = 27.7 bits (61), Expect = 0.22
 Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 26/70 (37%)

Query: 1   MVDPDAPSRKDQKLSPILHYLVGNIPGHDV---------------------NKGHIIADY 39
           + DPDAP+          H+ V NIP                               A +
Sbjct: 51  VYDPDAPTGSGWW-----HWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGF 105

Query: 40  RGAMPPKGSG 49
            GA PPKG  
Sbjct: 106 GGACPPKGDK 115


>d3bl2a1 f.1.4.1 (A:6-134) Bcl-2 homolog V-bcl-2 {Murid
          herpesvirus 4 [TaxId: 33708]}
          Length = 129

 Score = 24.2 bits (52), Expect = 3.8
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 49 GRTSSQWITEVKQLGNS---GTINQSRAAGFFQPGVKVC 84
          G     W  ++ +L  S     IN  R  GFF  G  VC
Sbjct: 56 GPALKNWKRDLSKLFTSLFVDVINSGRIVGFFDVGRYVC 94


>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus
          oryzae, Taka-amylase [TaxId: 5062]}
          Length = 381

 Score = 24.2 bits (51), Expect = 4.3
 Identities = 6/35 (17%), Positives = 11/35 (31%)

Query: 14 LSPILHYLVGNIPGHDVNKGHIIADYRGAMPPKGS 48
          ++P+   L       D   G+   D        G+
Sbjct: 62 ITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGT 96


>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange
          factor GrpE {Escherichia coli [TaxId: 562]}
          Length = 59

 Score = 23.0 bits (50), Expect = 4.5
 Identities = 6/31 (19%), Positives = 14/31 (45%)

Query: 10 KDQKLSPILHYLVGNIPGHDVNKGHIIADYR 40
           +  L P +H  +  +   DV  G+++   +
Sbjct: 7  TNVPLDPNVHQAIAMVESDDVAPGNVLGIMQ 37


>d2cb2a1 d.58.4.17 (A:2-308) Sulfur oxygenase reductase SOR
           {Acidianus ambivalens [TaxId: 2283]}
          Length = 307

 Score = 24.1 bits (52), Expect = 5.8
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 59  VKQLGNSGTINQSRAAGFFQPGVKVCHIIADYRGAMPPKGSGSILKGPVPNG 110
           +K++G S         G  Q G K  H + +  G++ P  +  +   P    
Sbjct: 198 LKEIGVS-------GIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKN 242


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 448,219
Number of extensions: 18349
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 10
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.3 bits)