BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6924
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BZW8|NHLC2_MOUSE NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2
SV=1
Length = 725
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 22 DFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
+F EW+NT EPLS+ L K+V++DFFTYCCINC+H+LP
Sbjct: 56 EFPEGLEWLNTEEPLSIYKDLCGKVVVLDFFTYCCINCIHVLP 98
>sp|Q8NBF2|NHLC2_HUMAN NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1
SV=1
Length = 726
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 22 DFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
+F EW+NT EP+S+ L KIV++DFFTYCCINC+H+LP
Sbjct: 56 EFPEGLEWLNTEEPISVYKDLCGKIVVLDFFTYCCINCIHLLP 98
>sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2 OS=Bos taurus GN=NHLRC2 PE=2 SV=1
Length = 726
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 22 DFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
+F EW+NT EP+S+ L K+VI+DFFTYCCINC+H+LP
Sbjct: 56 EFPEGLEWLNTEEPISVYKDLCGKVVILDFFTYCCINCIHLLP 98
>sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2 OS=Gallus gallus GN=NHLRC2 PE=2
SV=1
Length = 727
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 28 EWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
+W+NT P+SL+ L K+V++DFFTYCCINC+H+LP
Sbjct: 57 QWLNTEGPISLHKDLCGKVVVLDFFTYCCINCLHLLP 93
>sp|Q10801|DIPZ_MYCTU Protein DipZ OS=Mycobacterium tuberculosis GN=dipZ PE=1 SV=1
Length = 695
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 29 WMNT--TEPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
W+NT +P+ L S L+ K+V++DF+ Y CINC +P
Sbjct: 409 WLNTPGNKPIDLKS-LRGKVVLIDFWAYSCINCQRAIP 445
>sp|P59960|DIPZ_MYCBO Protein DipZ OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=dipZ PE=4 SV=1
Length = 695
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 29 WMNT--TEPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
W+NT +P+ L S L+ K+V++DF+ Y CINC +P
Sbjct: 409 WLNTPGNKPIDLKS-LRGKVVLIDFWAYSCINCQRAIP 445
>sp|Q7W2Q0|DSBA_BORPA Thiol:disulfide interchange protein DsbA OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC
13253) GN=dsbA PE=1 SV=1
Length = 209
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 27 QEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPI 65
Q+++N P+ S KI +++FF Y C +C I P+
Sbjct: 31 QQYVNINPPMP--SDTPGKIEVLEFFAYTCPHCAAIEPM 67
>sp|Q7WDP8|DSBA_BORBR Thiol:disulfide interchange protein DsbA OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 /
RB50) GN=dsbA PE=3 SV=1
Length = 209
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 27 QEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPI 65
Q+++N P+ S KI +++FF Y C +C I P+
Sbjct: 31 QQYVNINPPMP--SDTPGKIEVLEFFAYTCPHCAAIEPM 67
>sp|Q7W0K2|DSBA_BORPE Thiol:disulfide interchange protein DsbA OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=dsbA
PE=1 SV=1
Length = 209
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 27 QEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPI 65
Q+++N P+ S KI +++FF Y C +C I P+
Sbjct: 31 QQYVNINPPMP--SDTPGKIEVLEFFAYTCPHCAAIEPM 67
>sp|Q9HUW5|DSBD1_PSEAE Thiol:disulfide interchange protein DsbD 1 OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=dsbD1 PE=3 SV=1
Length = 591
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 25 TKQEWMNTTEPLSLNSHLKN-----KIVIMDFFTYCCINC 59
T EW N T P L++ L K V++D++ CI+C
Sbjct: 468 TPGEWQNLTTPAQLDAALAEARQAGKPVLLDWYADWCISC 507
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.144 0.489
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,714,096
Number of Sequences: 539616
Number of extensions: 1210108
Number of successful extensions: 3170
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3164
Number of HSP's gapped (non-prelim): 11
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)