Query psy6924
Match_columns 89
No_of_seqs 180 out of 1257
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 21:56:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03012 TlpA_like_DipZ_like Tl 99.7 1.8E-17 4E-22 104.1 5.8 63 21-84 1-63 (126)
2 PTZ00056 glutathione peroxidas 99.6 7.8E-16 1.7E-20 104.3 5.0 63 18-84 17-79 (199)
3 PLN02919 haloacid dehalogenase 99.6 2.4E-15 5.2E-20 121.3 7.0 67 17-84 394-460 (1057)
4 PF08534 Redoxin: Redoxin; In 99.6 3.2E-15 7E-20 95.4 5.7 65 18-84 4-69 (146)
5 cd03008 TryX_like_RdCVF Trypar 99.6 2.3E-15 5E-20 98.1 4.8 49 34-83 16-71 (146)
6 cd00340 GSH_Peroxidase Glutath 99.6 2.6E-15 5.6E-20 97.3 4.9 50 33-84 12-61 (152)
7 TIGR02540 gpx7 putative glutat 99.5 6.1E-15 1.3E-19 95.5 4.5 51 33-84 12-62 (153)
8 PLN02412 probable glutathione 99.5 9E-15 1.9E-19 96.5 4.9 62 19-84 8-69 (167)
9 PLN02399 phospholipid hydroper 99.5 1.2E-14 2.5E-19 101.2 5.3 65 16-84 75-139 (236)
10 cd02964 TryX_like_family Trypa 99.5 1.6E-14 3.4E-19 91.4 5.4 49 34-83 8-58 (132)
11 cd03009 TryX_like_TryX_NRX Try 99.5 5.4E-14 1.2E-18 88.5 5.5 50 33-83 8-59 (131)
12 cd02967 mauD Methylamine utili 99.5 1.2E-13 2.6E-18 84.6 6.0 49 33-83 10-59 (114)
13 PTZ00256 glutathione peroxidas 99.5 6.6E-14 1.4E-18 93.4 4.6 62 19-84 19-81 (183)
14 cd03010 TlpA_like_DsbE TlpA-li 99.4 2.9E-13 6.2E-18 84.7 5.9 46 34-83 16-61 (127)
15 PRK14018 trifunctional thiored 99.4 5.1E-13 1.1E-17 101.5 6.3 60 19-84 37-96 (521)
16 cd02999 PDI_a_ERp44_like PDIa 99.4 8.8E-13 1.9E-17 80.4 5.4 41 35-75 9-49 (100)
17 PF13905 Thioredoxin_8: Thiore 99.4 1.2E-12 2.6E-17 78.0 5.8 41 44-84 1-42 (95)
18 PF00578 AhpC-TSA: AhpC/TSA fa 99.4 1E-12 2.2E-17 81.2 5.4 62 19-84 4-66 (124)
19 PRK10606 btuE putative glutath 99.4 5.1E-13 1.1E-17 89.8 4.3 49 33-83 15-63 (183)
20 cd02985 TRX_CDSP32 TRX family, 99.4 1.2E-12 2.7E-17 79.9 5.2 34 41-74 12-45 (103)
21 PRK15412 thiol:disulfide inter 99.3 2E-12 4.4E-17 86.3 5.7 59 18-83 43-103 (185)
22 PRK03147 thiol-disulfide oxido 99.3 2.6E-12 5.7E-17 83.7 6.0 63 17-83 38-100 (173)
23 PRK00522 tpx lipid hydroperoxi 99.3 4.1E-12 8.8E-17 83.7 5.5 69 10-84 14-83 (167)
24 PRK13728 conjugal transfer pro 99.3 4.1E-12 8.8E-17 85.4 5.4 52 19-83 54-105 (181)
25 cd03018 PRX_AhpE_like Peroxire 99.3 3.8E-12 8.2E-17 81.2 4.9 63 18-84 5-69 (149)
26 cd02948 TRX_NDPK TRX domain, T 99.3 6.5E-12 1.4E-16 76.5 5.6 37 43-79 16-52 (102)
27 cd03014 PRX_Atyp2cys Peroxired 99.3 4.7E-12 1E-16 80.6 4.9 61 18-84 4-65 (143)
28 cd02954 DIM1 Dim1 family; Dim1 99.3 7.7E-12 1.7E-16 78.6 5.7 34 43-76 13-46 (114)
29 cd02968 SCO SCO (an acronym fo 99.3 5E-12 1.1E-16 79.9 4.8 61 20-84 2-66 (142)
30 cd02969 PRX_like1 Peroxiredoxi 99.3 7.1E-12 1.5E-16 82.2 5.3 62 19-84 3-65 (171)
31 KOG0907|consensus 99.3 8.2E-12 1.8E-16 77.5 4.8 35 41-75 18-52 (106)
32 TIGR03137 AhpC peroxiredoxin. 99.3 6.1E-12 1.3E-16 84.3 4.6 65 17-84 5-72 (187)
33 cd03015 PRX_Typ2cys Peroxiredo 99.3 7.5E-12 1.6E-16 82.5 4.8 64 19-84 4-70 (173)
34 cd03017 PRX_BCP Peroxiredoxin 99.3 9.2E-12 2E-16 78.5 4.8 60 20-83 3-63 (140)
35 TIGR02661 MauD methylamine deh 99.2 2.2E-11 4.8E-16 81.7 6.2 54 17-73 49-103 (189)
36 cd02963 TRX_DnaJ TRX domain, D 99.2 2.1E-11 4.5E-16 75.4 5.1 41 41-81 21-61 (111)
37 TIGR00385 dsbE periplasmic pro 99.2 2.5E-11 5.4E-16 80.2 5.7 59 17-83 37-98 (173)
38 TIGR02738 TrbB type-F conjugat 99.2 1.2E-11 2.6E-16 81.1 4.0 32 43-74 49-80 (153)
39 PHA02278 thioredoxin-like prot 99.2 2.1E-11 4.6E-16 75.1 4.8 34 42-75 12-45 (103)
40 PRK09437 bcp thioredoxin-depen 99.2 1.6E-11 3.5E-16 79.1 4.4 64 17-84 7-71 (154)
41 cd02971 PRX_family Peroxiredox 99.2 2E-11 4.4E-16 76.8 4.7 61 20-84 2-63 (140)
42 cd02950 TxlA TRX-like protein 99.2 3.6E-11 7.7E-16 77.6 5.3 36 41-76 17-52 (142)
43 cd02986 DLP Dim1 family, Dim1- 99.2 4.1E-11 8.9E-16 75.3 5.3 33 43-75 13-45 (114)
44 KOG0910|consensus 99.2 3E-11 6.6E-16 78.9 4.6 35 42-76 59-93 (150)
45 cd03006 PDI_a_EFP1_N PDIa fami 99.2 5.7E-11 1.2E-15 74.3 5.5 35 42-76 27-61 (113)
46 cd02956 ybbN ybbN protein fami 99.2 7.1E-11 1.5E-15 70.4 5.4 35 42-76 10-44 (96)
47 cd02970 PRX_like2 Peroxiredoxi 99.2 5.7E-11 1.2E-15 75.3 5.2 61 20-84 2-64 (149)
48 cd02993 PDI_a_APS_reductase PD 99.2 7.1E-11 1.5E-15 72.6 5.4 40 42-81 19-58 (109)
49 cd02966 TlpA_like_family TlpA- 99.2 9.8E-11 2.1E-15 69.9 5.5 50 33-83 9-58 (116)
50 PRK13190 putative peroxiredoxi 99.1 5.9E-11 1.3E-15 80.5 4.7 64 16-84 4-68 (202)
51 cd03000 PDI_a_TMX3 PDIa family 99.1 1.3E-10 2.9E-15 70.6 5.7 35 43-77 14-48 (104)
52 PRK10382 alkyl hydroperoxide r 99.1 6.6E-11 1.4E-15 79.7 4.6 66 18-84 6-72 (187)
53 PLN00410 U5 snRNP protein, DIM 99.1 1.1E-10 2.4E-15 75.9 5.3 34 43-76 22-55 (142)
54 cd03003 PDI_a_ERdj5_N PDIa fam 99.1 1.5E-10 3.3E-15 69.9 5.4 35 42-76 16-50 (101)
55 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 1.4E-10 3E-15 71.8 5.2 40 33-73 10-49 (123)
56 TIGR01626 ytfJ_HI0045 conserve 99.1 7.4E-11 1.6E-15 79.5 3.8 37 34-71 50-86 (184)
57 cd02962 TMX2 TMX2 family; comp 99.1 2E-10 4.3E-15 75.3 5.6 41 42-82 45-85 (152)
58 PTZ00137 2-Cys peroxiredoxin; 99.1 3.2E-10 7E-15 80.0 5.4 75 7-84 62-139 (261)
59 cd02994 PDI_a_TMX PDIa family, 99.1 4.4E-10 9.6E-15 67.6 5.3 39 42-81 15-53 (101)
60 PRK09381 trxA thioredoxin; Pro 99.0 4.7E-10 1E-14 68.4 5.5 34 43-76 20-53 (109)
61 cd03004 PDI_a_ERdj5_C PDIa fam 99.0 6.3E-10 1.4E-14 67.2 5.6 33 43-75 18-50 (104)
62 cd02959 ERp19 Endoplasmic reti 99.0 1.7E-10 3.7E-15 72.3 2.9 46 35-81 11-57 (117)
63 cd03002 PDI_a_MPD1_like PDI fa 99.0 8.9E-10 1.9E-14 66.8 5.5 34 43-76 17-50 (109)
64 cd02957 Phd_like Phosducin (Ph 99.0 6.4E-10 1.4E-14 68.8 4.7 34 43-76 23-56 (113)
65 TIGR02740 TraF-like TraF-like 99.0 3.3E-10 7.2E-15 80.1 3.6 39 35-74 158-196 (271)
66 cd02952 TRP14_like Human TRX-r 99.0 9.1E-10 2E-14 69.6 5.2 34 42-75 19-59 (119)
67 cd02953 DsbDgamma DsbD gamma f 99.0 7.7E-10 1.7E-14 67.0 4.7 39 42-81 9-50 (104)
68 cd02997 PDI_a_PDIR PDIa family 99.0 1.2E-09 2.5E-14 65.5 5.4 35 43-77 16-50 (104)
69 cd03005 PDI_a_ERp46 PDIa famil 99.0 1.2E-09 2.6E-14 65.4 5.1 31 45-75 17-47 (102)
70 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 1.5E-09 3.3E-14 64.9 5.4 34 43-76 17-50 (104)
71 COG3118 Thioredoxin domain-con 99.0 7.4E-10 1.6E-14 79.2 4.6 40 41-81 40-79 (304)
72 PRK13599 putative peroxiredoxi 98.9 9.8E-10 2.1E-14 75.4 4.5 63 18-84 6-69 (215)
73 cd02984 TRX_PICOT TRX domain, 98.9 2.5E-09 5.4E-14 63.6 5.5 30 44-73 14-43 (97)
74 TIGR01126 pdi_dom protein disu 98.9 2.8E-09 6.2E-14 63.4 5.7 35 43-77 12-46 (102)
75 cd03016 PRX_1cys Peroxiredoxin 98.9 1.2E-09 2.7E-14 74.0 4.3 61 19-84 4-66 (203)
76 PTZ00253 tryparedoxin peroxida 98.9 1.6E-09 3.4E-14 73.2 4.8 67 17-84 9-77 (199)
77 PRK15000 peroxidase; Provision 98.9 2E-09 4.4E-14 73.0 5.3 65 18-84 6-75 (200)
78 cd02996 PDI_a_ERp44 PDIa famil 98.9 2.5E-09 5.3E-14 65.3 5.2 33 43-75 17-49 (108)
79 cd02992 PDI_a_QSOX PDIa family 98.9 3.5E-09 7.5E-14 65.9 5.4 33 43-75 18-50 (114)
80 PF00085 Thioredoxin: Thioredo 98.9 4.1E-09 8.9E-14 62.7 5.5 38 43-81 16-53 (103)
81 PRK10996 thioredoxin 2; Provis 98.9 3.4E-09 7.4E-14 68.0 5.4 38 43-81 51-88 (139)
82 PTZ00051 thioredoxin; Provisio 98.9 3.5E-09 7.5E-14 63.2 5.1 33 43-75 17-49 (98)
83 cd02998 PDI_a_ERp38 PDIa famil 98.9 4.7E-09 1E-13 62.7 5.6 33 43-75 17-49 (105)
84 PRK13191 putative peroxiredoxi 98.9 2.3E-09 5E-14 73.6 4.4 64 17-84 10-74 (215)
85 cd02989 Phd_like_TxnDC9 Phosdu 98.9 3.2E-09 7E-14 66.0 4.5 33 43-75 21-53 (113)
86 TIGR00424 APS_reduc 5'-adenyly 98.9 3.4E-09 7.4E-14 79.9 5.4 39 43-81 370-408 (463)
87 cd02951 SoxW SoxW family; SoxW 98.9 2.9E-09 6.4E-14 66.5 4.1 39 42-81 11-53 (125)
88 cd02949 TRX_NTR TRX domain, no 98.9 8.4E-09 1.8E-13 61.9 5.8 33 43-75 12-44 (97)
89 KOG2501|consensus 98.9 2.3E-09 4.9E-14 70.6 3.5 45 33-77 22-66 (157)
90 cd02987 Phd_like_Phd Phosducin 98.8 4.9E-09 1.1E-13 69.9 4.7 33 43-75 82-114 (175)
91 KOG0908|consensus 98.8 3.4E-09 7.5E-14 74.4 4.0 37 40-76 17-53 (288)
92 PRK13189 peroxiredoxin; Provis 98.8 6.3E-09 1.4E-13 71.7 4.7 63 17-84 12-76 (222)
93 cd03001 PDI_a_P5 PDIa family, 98.8 1.3E-08 2.7E-13 60.9 5.5 34 43-76 17-50 (103)
94 PTZ00443 Thioredoxin domain-co 98.8 8.7E-09 1.9E-13 71.3 5.2 34 43-76 51-84 (224)
95 cd02988 Phd_like_VIAF Phosduci 98.8 9.9E-09 2.1E-13 69.5 4.8 36 43-78 101-136 (192)
96 PTZ00102 disulphide isomerase; 98.8 1.1E-08 2.4E-13 75.8 5.5 42 42-83 373-414 (477)
97 PLN02309 5'-adenylylsulfate re 98.8 1.3E-08 2.8E-13 76.7 5.5 39 43-81 364-402 (457)
98 TIGR01295 PedC_BrcD bacterioci 98.8 1.7E-08 3.7E-13 63.7 4.9 31 43-73 22-52 (122)
99 KOG0190|consensus 98.7 1.3E-08 2.7E-13 77.1 4.5 44 40-83 380-423 (493)
100 TIGR01068 thioredoxin thioredo 98.7 3.7E-08 8.1E-13 58.2 5.7 33 43-75 13-45 (101)
101 COG0526 TrxA Thiol-disulfide i 98.7 3.2E-08 7E-13 57.9 5.3 36 40-75 28-63 (127)
102 cd02961 PDI_a_family Protein D 98.7 5.3E-08 1.1E-12 57.0 5.3 32 43-74 14-45 (101)
103 cd02975 PfPDO_like_N Pyrococcu 98.6 4E-08 8.6E-13 61.0 3.9 31 43-73 21-51 (113)
104 TIGR01130 ER_PDI_fam protein d 98.5 1.4E-07 3E-12 69.2 5.4 33 43-75 363-395 (462)
105 cd02965 HyaE HyaE family; HyaE 98.5 1.5E-07 3.3E-12 58.9 4.6 35 42-76 25-61 (111)
106 PTZ00062 glutaredoxin; Provisi 98.5 1.2E-07 2.6E-12 64.9 4.0 32 45-76 18-49 (204)
107 TIGR00412 redox_disulf_2 small 98.5 2E-07 4.4E-12 54.1 4.0 33 48-81 2-34 (76)
108 TIGR01130 ER_PDI_fam protein d 98.5 2E-07 4.4E-12 68.3 5.0 35 43-77 17-51 (462)
109 cd02947 TRX_family TRX family; 98.5 4.1E-07 8.8E-12 52.1 4.9 30 44-73 10-39 (93)
110 TIGR00411 redox_disulf_1 small 98.5 3.8E-07 8.2E-12 52.5 4.5 30 47-76 2-31 (82)
111 PF00255 GSHPx: Glutathione pe 98.4 5.1E-07 1.1E-11 56.2 5.2 49 33-83 11-59 (108)
112 COG1225 Bcp Peroxiredoxin [Pos 98.4 3.9E-07 8.4E-12 60.2 4.4 68 14-85 4-72 (157)
113 cd02982 PDI_b'_family Protein 98.4 6.2E-07 1.3E-11 53.7 4.7 33 44-76 12-44 (103)
114 PRK00293 dipZ thiol:disulfide 98.4 4.5E-07 9.8E-12 69.9 4.5 35 41-75 471-508 (571)
115 cd03065 PDI_b_Calsequestrin_N 98.4 7.1E-07 1.5E-11 56.4 4.6 31 43-73 26-60 (120)
116 PTZ00102 disulphide isomerase; 98.4 7.4E-07 1.6E-11 66.1 5.1 34 43-76 48-81 (477)
117 PF13899 Thioredoxin_7: Thiore 98.3 9.5E-07 2.1E-11 51.6 3.9 42 40-82 13-57 (82)
118 COG0386 BtuE Glutathione perox 98.3 1.4E-06 3E-11 57.4 4.1 49 33-83 15-63 (162)
119 cd02955 SSP411 TRX domain, SSP 98.2 1.3E-06 2.7E-11 55.5 3.4 42 40-82 11-55 (124)
120 PF13098 Thioredoxin_2: Thiore 98.2 1.8E-06 3.8E-11 52.5 3.7 29 42-70 3-31 (112)
121 PHA02125 thioredoxin-like prot 98.2 1.1E-06 2.4E-11 50.7 2.5 23 48-70 2-24 (75)
122 cd02973 TRX_GRX_like Thioredox 98.2 2.1E-06 4.5E-11 48.0 3.5 29 47-75 2-30 (67)
123 cd03013 PRX5_like Peroxiredoxi 98.1 3.5E-06 7.5E-11 55.0 4.2 65 19-84 4-72 (155)
124 cd02960 AGR Anterior Gradient 98.1 1.8E-06 4E-11 55.4 2.3 31 34-65 14-44 (130)
125 TIGR02187 GlrX_arch Glutaredox 98.0 5.5E-06 1.2E-10 56.4 3.8 33 42-74 131-163 (215)
126 TIGR02187 GlrX_arch Glutaredox 98.0 6.9E-06 1.5E-10 56.0 4.2 35 41-75 16-53 (215)
127 KOG0190|consensus 98.0 7.3E-06 1.6E-10 62.4 4.5 35 42-76 40-74 (493)
128 KOG1651|consensus 98.0 1E-05 2.2E-10 53.8 4.3 50 33-83 24-73 (171)
129 cd03026 AhpF_NTD_C TRX-GRX-lik 97.9 1.6E-05 3.4E-10 47.6 4.2 43 40-82 8-50 (89)
130 KOG0191|consensus 97.8 3E-05 6.4E-10 56.9 4.6 34 42-75 45-78 (383)
131 cd01659 TRX_superfamily Thiore 97.8 3.7E-05 8E-10 40.0 3.8 33 48-82 1-33 (69)
132 cd03023 DsbA_Com1_like DsbA fa 97.8 7E-05 1.5E-09 47.1 5.3 34 42-75 3-36 (154)
133 PF14595 Thioredoxin_9: Thiore 97.7 6E-05 1.3E-09 48.1 3.7 42 40-81 37-78 (129)
134 PF13462 Thioredoxin_4: Thiore 97.5 0.00049 1.1E-08 43.8 6.3 38 35-73 4-41 (162)
135 KOG1731|consensus 97.4 3.2E-05 7E-10 59.7 0.0 38 45-82 58-96 (606)
136 TIGR02200 GlrX_actino Glutared 97.4 7.8E-05 1.7E-09 42.1 1.2 24 48-71 2-25 (77)
137 COG4232 Thiol:disulfide interc 97.3 0.00017 3.6E-09 55.8 2.5 41 41-81 471-512 (569)
138 KOG0912|consensus 97.3 0.0002 4.4E-09 52.1 2.6 39 44-83 13-55 (375)
139 cd03019 DsbA_DsbA DsbA family, 97.2 0.00058 1.3E-08 44.2 4.2 42 43-86 14-55 (178)
140 KOG0191|consensus 97.2 0.00073 1.6E-08 49.6 5.0 33 43-75 161-193 (383)
141 PF06110 DUF953: Eukaryotic pr 97.2 0.0012 2.5E-08 41.8 5.3 34 42-75 17-57 (119)
142 KOG4277|consensus 97.2 0.0002 4.3E-09 52.3 1.9 36 43-78 42-77 (468)
143 PF02630 SCO1-SenC: SCO1/SenC; 97.2 0.0013 2.8E-08 43.6 5.6 48 33-81 42-92 (174)
144 TIGR02180 GRX_euk Glutaredoxin 97.1 0.00032 7E-09 40.2 1.7 23 48-70 1-23 (84)
145 PRK11200 grxA glutaredoxin 1; 97.0 0.0012 2.5E-08 38.6 3.5 34 48-81 3-36 (85)
146 PF13728 TraF: F plasmid trans 97.0 0.0012 2.7E-08 45.4 4.0 39 40-81 116-154 (215)
147 cd02958 UAS UAS family; UAS is 96.9 0.00087 1.9E-08 41.1 2.3 25 40-64 13-37 (114)
148 TIGR02196 GlrX_YruB Glutaredox 96.8 0.00094 2E-08 36.8 2.2 21 48-68 2-22 (74)
149 KOG3425|consensus 96.8 0.0047 1E-07 39.3 5.2 39 43-82 24-70 (128)
150 cd03007 PDI_a_ERp29_N PDIa fam 96.8 0.0019 4.1E-08 40.7 3.4 27 43-73 17-45 (116)
151 PRK10954 periplasmic protein d 96.7 0.0038 8.1E-08 42.3 4.6 35 42-76 35-72 (207)
152 PRK13703 conjugal pilus assemb 96.6 0.0021 4.6E-08 45.3 3.3 41 40-83 139-179 (248)
153 TIGR02739 TraF type-F conjugat 96.5 0.0033 7.1E-08 44.5 3.7 40 40-82 146-185 (256)
154 COG0450 AhpC Peroxiredoxin [Po 96.4 0.0064 1.4E-07 41.5 4.2 65 17-84 6-74 (194)
155 smart00594 UAS UAS domain. 96.3 0.0031 6.7E-08 39.4 2.2 24 40-63 23-46 (122)
156 KOG0914|consensus 96.2 0.0053 1.2E-07 43.0 3.3 38 42-79 142-179 (265)
157 cd02972 DsbA_family DsbA famil 95.9 0.015 3.1E-07 33.3 3.6 29 48-76 1-29 (98)
158 COG1999 Uncharacterized protei 95.9 0.025 5.5E-07 38.6 5.2 41 33-74 57-98 (207)
159 cd03020 DsbA_DsbC_DsbG DsbA fa 95.9 0.021 4.6E-07 38.1 4.8 33 35-68 69-101 (197)
160 TIGR02183 GRXA Glutaredoxin, G 95.7 0.012 2.6E-07 34.6 2.8 26 48-73 2-27 (86)
161 KOG0911|consensus 95.7 0.0036 7.9E-08 43.5 0.6 33 43-75 16-48 (227)
162 PF04592 SelP_N: Selenoprotein 95.7 0.015 3.2E-07 40.9 3.6 54 33-87 16-69 (238)
163 cd03419 GRX_GRXh_1_2_like Glut 95.5 0.011 2.4E-07 33.6 2.1 26 48-73 2-27 (82)
164 PF00837 T4_deiodinase: Iodoth 95.5 0.018 3.8E-07 40.5 3.5 56 17-76 76-134 (237)
165 cd02976 NrdH NrdH-redoxin (Nrd 95.5 0.013 2.9E-07 32.0 2.4 21 48-68 2-22 (73)
166 cd02066 GRX_family Glutaredoxi 95.5 0.014 3E-07 31.7 2.3 23 48-70 2-24 (72)
167 PRK10877 protein disulfide iso 95.4 0.019 4.2E-07 39.8 3.4 32 40-71 103-134 (232)
168 KOG0855|consensus 95.4 0.024 5.2E-07 38.3 3.5 66 16-85 65-132 (211)
169 PRK11657 dsbG disulfide isomer 95.2 0.03 6.6E-07 39.2 3.9 37 35-72 109-145 (251)
170 PF00462 Glutaredoxin: Glutare 95.0 0.028 6E-07 30.5 2.5 21 48-68 1-21 (60)
171 PHA03050 glutaredoxin; Provisi 94.9 0.022 4.9E-07 35.1 2.3 23 48-70 15-37 (108)
172 PF02114 Phosducin: Phosducin; 94.7 0.085 1.8E-06 37.5 5.0 42 42-83 144-185 (265)
173 COG1651 DsbG Protein-disulfide 94.7 0.1 2.2E-06 35.7 5.2 44 33-77 74-117 (244)
174 PF03190 Thioredox_DsbH: Prote 94.6 0.011 2.3E-07 39.4 0.3 36 27-63 20-56 (163)
175 TIGR02190 GlrX-dom Glutaredoxi 93.8 0.067 1.5E-06 30.7 2.5 25 45-69 7-31 (79)
176 TIGR02189 GlrX-like_plant Glut 93.8 0.056 1.2E-06 32.7 2.2 22 48-69 10-31 (99)
177 KOG2792|consensus 93.7 0.11 2.3E-06 37.2 3.8 42 33-75 129-171 (280)
178 TIGR02181 GRX_bact Glutaredoxi 93.7 0.052 1.1E-06 30.8 1.9 22 48-69 1-22 (79)
179 cd03418 GRX_GRXb_1_3_like Glut 93.1 0.096 2.1E-06 29.2 2.4 21 48-68 2-22 (75)
180 PF13192 Thioredoxin_3: Thiore 93.0 0.2 4.3E-06 28.6 3.6 32 50-82 4-35 (76)
181 KOG0852|consensus 92.9 0.21 4.5E-06 34.0 4.0 63 19-84 9-74 (196)
182 cd03027 GRX_DEP Glutaredoxin ( 92.5 0.13 2.7E-06 28.9 2.3 21 48-68 3-23 (73)
183 cd03029 GRX_hybridPRX5 Glutare 92.3 0.15 3.3E-06 28.5 2.5 22 48-69 3-24 (72)
184 KOG0913|consensus 91.1 0.041 8.9E-07 38.7 -0.9 31 46-76 41-71 (248)
185 PRK10329 glutaredoxin-like pro 91.1 0.23 5E-06 28.9 2.4 21 48-68 3-23 (81)
186 PF02966 DIM1: Mitosis protein 90.9 0.87 1.9E-05 29.4 5.1 39 43-83 19-57 (133)
187 TIGR02194 GlrX_NrdH Glutaredox 90.8 0.2 4.4E-06 28.0 1.9 20 49-68 2-21 (72)
188 PF06053 DUF929: Domain of unk 90.0 0.41 8.8E-06 33.9 3.2 35 42-76 56-90 (249)
189 TIGR00365 monothiol glutaredox 90.0 0.27 5.9E-06 29.5 2.1 27 43-69 10-40 (97)
190 PHA03075 glutaredoxin-like pro 89.7 0.47 1E-05 30.1 3.0 40 45-84 2-41 (123)
191 cd03028 GRX_PICOT_like Glutare 89.3 0.34 7.4E-06 28.5 2.1 28 42-69 5-36 (90)
192 PRK10638 glutaredoxin 3; Provi 88.8 0.46 1E-05 27.3 2.4 22 48-69 4-25 (83)
193 KOG3414|consensus 88.6 1.4 3.1E-05 28.5 4.7 40 42-83 21-60 (142)
194 TIGR03143 AhpF_homolog putativ 88.4 0.86 1.9E-05 35.2 4.3 41 42-82 474-514 (555)
195 COG0695 GrxC Glutaredoxin and 86.9 0.64 1.4E-05 27.0 2.3 22 48-69 3-24 (80)
196 PRK15317 alkyl hydroperoxide r 86.0 1.4 3.1E-05 33.6 4.3 41 41-81 113-153 (517)
197 cd03025 DsbA_FrnE_like DsbA fa 85.2 2.2 4.8E-05 27.7 4.4 27 48-74 3-29 (193)
198 PRK10824 glutaredoxin-4; Provi 85.0 0.78 1.7E-05 28.8 2.1 28 42-69 12-43 (115)
199 COG2077 Tpx Peroxiredoxin [Pos 84.6 3.3 7.2E-05 27.5 4.9 60 14-77 18-78 (158)
200 cd02991 UAS_ETEA UAS family, E 84.4 0.84 1.8E-05 28.4 2.0 31 40-70 13-49 (116)
201 PF01323 DSBA: DSBA-like thior 84.4 2.8 6E-05 27.1 4.6 29 47-75 1-29 (193)
202 PRK12759 bifunctional gluaredo 83.0 1.1 2.3E-05 33.7 2.4 22 48-69 4-25 (410)
203 KOG1752|consensus 82.8 1.2 2.5E-05 27.5 2.1 25 43-68 12-36 (104)
204 cd02977 ArsC_family Arsenate R 81.1 1.3 2.8E-05 26.6 1.9 21 49-69 2-22 (105)
205 KOG3170|consensus 80.3 3.6 7.7E-05 28.7 4.0 40 41-80 108-147 (240)
206 PF13743 Thioredoxin_5: Thiore 80.3 4.1 8.9E-05 26.9 4.3 27 50-76 2-28 (176)
207 cd03035 ArsC_Yffb Arsenate Red 79.0 1.7 3.6E-05 26.5 1.9 20 49-68 2-21 (105)
208 TIGR03140 AhpF alkyl hydropero 78.8 4 8.6E-05 31.2 4.3 40 41-80 114-153 (515)
209 cd03036 ArsC_like Arsenate Red 75.5 2.4 5.3E-05 25.9 2.0 20 49-68 2-21 (111)
210 PRK01655 spxA transcriptional 74.2 3.4 7.4E-05 26.1 2.4 21 48-68 2-22 (131)
211 PF10589 NADH_4Fe-4S: NADH-ubi 71.4 4.4 9.5E-05 21.2 2.1 21 55-75 18-38 (46)
212 TIGR01617 arsC_related transcr 70.9 3.5 7.7E-05 25.3 1.9 19 50-68 3-21 (117)
213 KOG1672|consensus 70.4 9.5 0.00021 26.4 4.0 40 43-82 83-122 (211)
214 PF11009 DUF2847: Protein of u 67.7 12 0.00025 23.2 3.7 42 41-82 16-58 (105)
215 PRK12559 transcriptional regul 67.3 6 0.00013 25.1 2.4 21 48-68 2-22 (131)
216 PTZ00062 glutaredoxin; Provisi 66.3 5.7 0.00012 27.2 2.3 27 43-69 111-141 (204)
217 cd03032 ArsC_Spx Arsenate Redu 65.6 6.9 0.00015 23.9 2.4 20 49-68 3-22 (115)
218 PF05988 DUF899: Bacterial pro 63.0 15 0.00033 25.5 3.9 48 33-81 55-110 (211)
219 COG4545 Glutaredoxin-related p 62.6 1.6 3.4E-05 25.8 -0.8 25 49-73 5-29 (85)
220 PF09695 YtfJ_HI0045: Bacteria 62.0 44 0.00096 22.2 6.1 49 35-84 29-78 (160)
221 KOG0541|consensus 60.6 22 0.00049 23.8 4.2 52 35-87 34-88 (171)
222 cd03060 GST_N_Omega_like GST_N 59.0 9.2 0.0002 20.8 2.0 19 50-68 3-21 (71)
223 PF14307 Glyco_tran_WbsX: Glyc 57.6 27 0.00058 25.5 4.6 44 42-85 156-199 (345)
224 KOG4498|consensus 56.3 16 0.00036 25.1 3.1 53 32-85 38-92 (197)
225 PRK13344 spxA transcriptional 55.0 13 0.00028 23.5 2.4 20 49-68 3-22 (132)
226 COG5270 PUA domain (predicted 54.6 4.7 0.0001 27.6 0.3 18 43-60 4-21 (202)
227 cd03031 GRX_GRX_like Glutaredo 53.2 5.2 0.00011 26.0 0.3 15 55-69 15-29 (147)
228 cd03040 GST_N_mPGES2 GST_N fam 50.3 20 0.00043 19.7 2.4 20 50-69 4-23 (77)
229 cd03024 DsbA_FrnE DsbA family, 48.6 39 0.00085 21.9 4.0 26 50-75 3-28 (201)
230 cd03051 GST_N_GTT2_like GST_N 48.2 14 0.00031 19.7 1.6 20 50-69 3-22 (74)
231 COG4279 Uncharacterized conser 47.5 21 0.00045 25.6 2.6 33 55-87 132-164 (266)
232 COG2143 Thioredoxin-related pr 46.4 24 0.00053 23.8 2.7 35 40-74 38-75 (182)
233 cd03033 ArsC_15kD Arsenate Red 46.1 24 0.00051 21.8 2.5 20 49-68 3-22 (113)
234 KOG0854|consensus 45.8 57 0.0012 22.5 4.4 63 16-83 8-72 (224)
235 PF05768 DUF836: Glutaredoxin- 44.0 19 0.0004 20.5 1.7 26 48-73 2-27 (81)
236 PF05176 ATP-synt_10: ATP10 pr 43.9 1E+02 0.0022 21.8 5.6 66 18-88 99-165 (252)
237 KOG2640|consensus 43.9 6.7 0.00015 28.8 -0.3 30 45-74 77-106 (319)
238 PF06764 DUF1223: Protein of u 43.7 62 0.0014 22.1 4.5 34 50-87 4-37 (202)
239 TIGR03143 AhpF_homolog putativ 43.3 31 0.00067 26.7 3.2 32 40-71 362-393 (555)
240 cd02981 PDI_b_family Protein D 43.1 49 0.0011 18.7 3.5 30 43-75 16-45 (97)
241 PRK12359 flavodoxin FldB; Prov 43.0 68 0.0015 21.2 4.5 45 41-86 76-121 (172)
242 COG1331 Highly conserved prote 42.3 15 0.00034 29.6 1.5 28 35-63 35-62 (667)
243 cd00570 GST_N_family Glutathio 42.2 18 0.00039 18.4 1.4 20 50-69 3-22 (71)
244 COG3495 Uncharacterized protei 41.0 12 0.00026 24.7 0.6 17 2-18 97-113 (166)
245 cd03037 GST_N_GRX2 GST_N famil 39.8 21 0.00046 19.2 1.4 19 51-69 4-22 (71)
246 cd03059 GST_N_SspA GST_N famil 39.3 27 0.00058 18.7 1.8 20 50-69 3-22 (73)
247 PRK11867 2-oxoglutarate ferred 39.1 22 0.00048 25.5 1.7 21 52-73 16-36 (286)
248 cd03041 GST_N_2GST_N GST_N fam 38.9 27 0.00058 19.3 1.8 20 50-69 4-23 (77)
249 TIGR02652 conserved hypothetic 38.9 13 0.00028 24.5 0.5 13 55-67 11-23 (163)
250 PF09654 DUF2396: Protein of u 38.9 13 0.00028 24.4 0.5 13 55-67 8-20 (161)
251 cd02974 AhpF_NTD_N Alkyl hydro 38.5 51 0.0011 19.6 3.1 33 40-73 15-47 (94)
252 PF04134 DUF393: Protein of un 37.0 23 0.00051 21.1 1.4 19 51-69 2-20 (114)
253 COG3581 Uncharacterized protei 36.6 35 0.00075 26.1 2.5 37 51-88 76-112 (420)
254 cd02008 TPP_IOR_alpha Thiamine 35.2 27 0.00059 22.7 1.6 27 54-81 5-31 (178)
255 cd03022 DsbA_HCCA_Iso DsbA fam 34.5 47 0.001 21.3 2.6 25 50-74 3-27 (192)
256 COG3019 Predicted metal-bindin 33.8 75 0.0016 20.9 3.4 33 46-85 26-58 (149)
257 cd03527 RuBisCO_small Ribulose 33.5 48 0.001 20.2 2.4 34 51-87 45-84 (99)
258 COG1393 ArsC Arsenate reductas 33.2 47 0.001 20.7 2.3 21 48-68 3-23 (117)
259 PF01106 NifU: NifU-like domai 32.4 15 0.00032 20.7 -0.0 32 33-66 16-47 (68)
260 PF12874 zf-met: Zinc-finger o 32.1 11 0.00024 16.3 -0.5 21 55-75 2-22 (25)
261 COG4312 Uncharacterized protei 30.3 81 0.0018 22.4 3.3 48 34-82 62-117 (247)
262 PF12641 Flavodoxin_3: Flavodo 30.0 84 0.0018 20.5 3.3 38 45-86 41-78 (160)
263 cd03034 ArsC_ArsC Arsenate Red 28.9 50 0.0011 20.0 1.9 20 49-68 2-21 (112)
264 PF06122 TraH: Conjugative rel 27.8 34 0.00074 25.2 1.2 23 53-75 94-116 (361)
265 PF13811 DUF4186: Domain of un 27.4 95 0.0021 19.5 3.0 25 31-59 54-80 (111)
266 cd04822 PA_M28_1_3 PA_M28_1_3: 26.5 1.2E+02 0.0027 19.7 3.6 13 41-53 45-57 (151)
267 PF07700 HNOB: Heme NO binding 26.2 1.1E+02 0.0025 19.8 3.4 36 41-76 124-159 (171)
268 PRK11866 2-oxoacid ferredoxin 25.5 69 0.0015 23.0 2.4 21 53-73 7-29 (279)
269 TIGR00014 arsC arsenate reduct 25.4 62 0.0014 19.7 1.9 19 50-68 3-21 (114)
270 PRK10853 putative reductase; P 25.3 72 0.0016 19.7 2.2 20 49-68 3-22 (118)
271 PRK05778 2-oxoglutarate ferred 25.3 66 0.0014 23.3 2.3 8 54-61 19-26 (301)
272 COG0678 AHP1 Peroxiredoxin [Po 25.2 1.2E+02 0.0026 20.3 3.3 45 42-87 35-82 (165)
273 PF03227 GILT: Gamma interfero 25.0 1.6E+02 0.0036 17.6 4.5 21 48-68 3-24 (108)
274 TIGR02000 NifU_proper Fe-S clu 24.9 91 0.002 22.5 3.0 51 33-85 239-289 (290)
275 cd03054 GST_N_Metaxin GST_N fa 24.8 47 0.001 17.9 1.2 15 54-68 14-28 (72)
276 PF11823 DUF3343: Protein of u 24.6 63 0.0014 18.0 1.7 34 53-86 38-72 (73)
277 COG4604 CeuD ABC-type enteroch 24.5 1E+02 0.0023 21.8 3.0 30 57-88 169-198 (252)
278 TIGR01616 nitro_assoc nitrogen 23.8 97 0.0021 19.4 2.6 21 48-68 3-23 (126)
279 PTZ00304 NADH dehydrogenase [u 23.8 50 0.0011 25.6 1.5 20 55-74 369-388 (461)
280 PRK10026 arsenate reductase; P 23.4 89 0.0019 20.1 2.4 21 48-68 4-24 (141)
281 PLN03132 NADH dehydrogenase (u 23.3 46 0.00099 25.8 1.2 24 51-74 371-398 (461)
282 cd03045 GST_N_Delta_Epsilon GS 23.2 54 0.0012 17.5 1.2 20 50-69 3-22 (74)
283 PF06858 NOG1: Nucleolar GTP-b 21.1 1.6E+02 0.0036 16.2 3.9 42 40-81 11-53 (58)
284 PF09949 DUF2183: Uncharacteri 21.0 1.2E+02 0.0027 18.3 2.6 23 63-85 52-74 (100)
285 PRK14811 formamidopyrimidine-D 20.9 25 0.00055 24.9 -0.5 12 53-64 255-266 (269)
286 TIGR02193 heptsyl_trn_I lipopo 20.6 1.6E+02 0.0036 20.5 3.5 35 46-82 2-36 (319)
No 1
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.71 E-value=1.8e-17 Score=104.13 Aligned_cols=63 Identities=38% Similarity=0.807 Sum_probs=57.1
Q ss_pred CCCccccccccCCCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 21 RDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 21 p~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
|++.+...|+++|+++++ ++++||++||+||++||++|++++|.|++++++|+++++.++++.
T Consensus 1 ~~~~~~~~w~~~~~~v~l-~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~ 63 (126)
T cd03012 1 PEFEGILQWLNTDKPLSL-AQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVH 63 (126)
T ss_pred CCCcchhhhhcCCCccCH-HHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEec
Confidence 566777789998889999 789999999999999999999999999999999999888888763
No 2
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.61 E-value=7.8e-16 Score=104.32 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=54.9
Q ss_pred ccCCCCccccccccCCCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 18 FHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 18 ~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
-.+|+|+... ++ |+.+++ ++++||+|||+|||+||++|++++|.|++++++|+++++.||++.
T Consensus 17 ~~~pdf~l~d--~~-G~~vsL-~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 17 KSIYDYTVKT--LE-GTTVPM-SSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred CCCCceEEEC--CC-CCEEeH-HHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEec
Confidence 3677876432 34 889999 899999999999999999999999999999999999999888764
No 3
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.59 E-value=2.4e-15 Score=121.30 Aligned_cols=67 Identities=37% Similarity=0.773 Sum_probs=60.1
Q ss_pred cccCCCCccccccccCCCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 17 IFHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 17 ~~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
+..+|+|.....|++ |+++++.++++||+|||+|||+||++|++++|.|++++++|+++++.++++.
T Consensus 394 g~~~p~f~~~~~~~~-g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~ 460 (1057)
T PLN02919 394 ATKVPEFPPKLDWLN-TAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVH 460 (1057)
T ss_pred CCcCCCCcccccccC-CccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEe
Confidence 567899987788888 7888874578999999999999999999999999999999999989988874
No 4
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.58 E-value=3.2e-15 Score=95.42 Aligned_cols=65 Identities=25% Similarity=0.386 Sum_probs=53.4
Q ss_pred ccCCCCccccccccCCCcccccccCCCCEEEEEEeCC-CChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 18 FHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTY-CCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 18 ~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
-.+|++.......+ |+++++ ++++||++||+||++ |||+|+.++|.+++++++|+++++.++.+.
T Consensus 4 ~~~P~~~~~~~~~~-g~~~~l-~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~ 69 (146)
T PF08534_consen 4 DKAPDFSLKDLDLD-GKPVSL-SDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVS 69 (146)
T ss_dssp SB--CCEEEEEETT-SEEEEG-GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCeEEEeecCC-CCEecH-HHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEec
Confidence 35677763222234 899999 789999999999999 999999999999999999999998888764
No 5
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.58 E-value=2.3e-15 Score=98.11 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=41.6
Q ss_pred CcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC-------CeEEEEE
Q psy6924 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK-------RTHIIKT 83 (89)
Q Consensus 34 ~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~-------~~~vi~~ 83 (89)
+.+++ ++++||+|+|+|||+||++|++++|.|++++++++++ ++.+|++
T Consensus 16 ~~~~l-s~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~V 71 (146)
T cd03008 16 EREIV-ARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYV 71 (146)
T ss_pred ccccH-HHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEE
Confidence 45677 7899999999999999999999999999999877653 5677655
No 6
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.58 E-value=2.6e-15 Score=97.27 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=46.8
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
|+.+++ ++++||+|||+|||+||+ |+.++|.|++++++|+++++.++++.
T Consensus 12 G~~v~l-~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~ 61 (152)
T cd00340 12 GEPVSL-SKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFP 61 (152)
T ss_pred CCEEeH-HHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEec
Confidence 789999 899999999999999999 99999999999999999998888763
No 7
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.54 E-value=6.1e-15 Score=95.50 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=47.8
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
|+.+++ ++++||++||+|||+||++|+.++|.+++++++|+++++.++++-
T Consensus 12 G~~~~l-~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~ 62 (153)
T TIGR02540 12 GRTVSL-EKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFP 62 (153)
T ss_pred CCEecH-HHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEe
Confidence 789999 899999999999999999999999999999999999998888764
No 8
>PLN02412 probable glutathione peroxidase
Probab=99.54 E-value=9e-15 Score=96.47 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=53.7
Q ss_pred cCCCCccccccccCCCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 19 HGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 19 ~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
.+|+|+... .+ |+.+++ ++++||+|||+||++||++|++++|.|++++++|+++++.|+++.
T Consensus 8 ~~pdf~l~d--~~-G~~v~l-~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~ 69 (167)
T PLN02412 8 SIYDFTVKD--IG-GNDVSL-NQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFP 69 (167)
T ss_pred CCCceEEEC--CC-CCEEeH-HHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEec
Confidence 467776332 23 889999 899999999999999999999999999999999999999988764
No 9
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.53 E-value=1.2e-14 Score=101.17 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=56.0
Q ss_pred ccccCCCCccccccccCCCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 16 AIFHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 16 ~~~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
.+-.+|+|+... ++ |+.+++ ++++||+|||+||++||++|+.++|.|++++++|+++++.||++-
T Consensus 75 ~g~~aPdF~l~d--~~-G~~vsL-sd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 75 TEKSVHDFTVKD--ID-GKDVAL-SKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred cCCCCCceEEEC--CC-CCEEeH-HHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 445678887432 34 889999 899999999999999999999999999999999999998888764
No 10
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.53 E-value=1.6e-14 Score=91.45 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=43.2
Q ss_pred CcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC--CeEEEEE
Q psy6924 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK--RTHIIKT 83 (89)
Q Consensus 34 ~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~~~vi~~ 83 (89)
+++++ ++++||+|+|+||++||++|++++|.+++++++++++ ++.++.+
T Consensus 8 ~~v~l-~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~V 58 (132)
T cd02964 8 GVVPV-SALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFV 58 (132)
T ss_pred ccccH-HHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 48999 8999999999999999999999999999999999875 5555543
No 11
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.49 E-value=5.4e-14 Score=88.50 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=44.2
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC--CeEEEEE
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK--RTHIIKT 83 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~~~vi~~ 83 (89)
|+.+++ ++++||+|+|+||++||++|++++|.+++++++++++ ++.++.+
T Consensus 8 G~~v~l-~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~i 59 (131)
T cd03009 8 GGKVPV-SSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFI 59 (131)
T ss_pred CCCccH-HHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEE
Confidence 889999 8999999999999999999999999999999998764 5555543
No 12
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.47 E-value=1.2e-13 Score=84.65 Aligned_cols=49 Identities=14% Similarity=0.334 Sum_probs=42.4
Q ss_pred CCcccccccCC-CCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 33 TEPLSLNSHLK-NKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 33 g~~~~l~~~~~-gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
|+.+++ ++.+ ||++||+||++||++|+.++|.++++++++++ ++.++.+
T Consensus 10 G~~~~l-~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v 59 (114)
T cd02967 10 GAPVRI-GGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLA 59 (114)
T ss_pred CCEEEc-ccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEE
Confidence 788999 7876 99999999999999999999999999988865 3555544
No 13
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.46 E-value=6.6e-14 Score=93.45 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=50.6
Q ss_pred cCCCCccccccccCCCcccccccCCCCEE-EEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 19 HGRDFCTKQEWMNTTEPLSLNSHLKNKIV-IMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 19 ~ap~~~~~~~~~~~g~~~~l~~~~~gk~v-vv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
.+|+|+... .+ |+.+++ ++++||+| |+.+||+||++|++++|.|++++++|+++++.++++.
T Consensus 19 ~~p~f~l~d--~~-G~~vsL-s~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 19 SFFEFEAID--ID-GQLVQL-SKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred cccceEeEc--CC-CCEEeH-HHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEe
Confidence 456665322 23 889999 89999965 4556999999999999999999999999998888764
No 14
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.44 E-value=2.9e-13 Score=84.68 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=39.9
Q ss_pred CcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 34 ~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
.++++ ++++||+++|+||++||++|++++|.++++++++ ++.+|++
T Consensus 16 ~~~~~-~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v 61 (127)
T cd03010 16 KTLTS-ADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGI 61 (127)
T ss_pred ccccH-HHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEE
Confidence 67888 7889999999999999999999999999998876 2555544
No 15
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.40 E-value=5.1e-13 Score=101.50 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=48.1
Q ss_pred cCCCCccccccccCCCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 19 HGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 19 ~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
.+|+|.... ++ |+.+.+ + +||+|||+|||+||++|++++|.|++++++++++++.+|++.
T Consensus 37 ~lP~f~l~D--~d-G~~v~l-s--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs 96 (521)
T PRK14018 37 TLSTLKTAD--NR-PASVYL-K--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVA 96 (521)
T ss_pred CCCCeEeec--CC-Cceeec-c--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 466665322 22 677776 4 899999999999999999999999999999987777777653
No 16
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.38 E-value=8.8e-13 Score=80.45 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=36.0
Q ss_pred cccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 35 PLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 35 ~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.+.+.++++||+|+|+|||+||++|++++|.++++++++++
T Consensus 9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~ 49 (100)
T cd02999 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ 49 (100)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc
Confidence 34443568999999999999999999999999999999975
No 17
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.38 E-value=1.2e-12 Score=78.01 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=36.3
Q ss_pred CCEEEEEEeCCCChhhhhhccHHHHHHHHhC-cCCeEEEEEE
Q psy6924 44 NKIVIMDFFTYCCINCMHILPIPILIRHILE-YKRTHIIKTF 84 (89)
Q Consensus 44 gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~-~~~~~vi~~~ 84 (89)
||+++|+|||+||++|+++.|.|.+++++|+ ++++.+|.+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs 42 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVS 42 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 7999999999999999999999999999999 6678877654
No 18
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.37 E-value=1e-12 Score=81.19 Aligned_cols=62 Identities=26% Similarity=0.330 Sum_probs=53.8
Q ss_pred cCCCCccccccccCCCcccccccCCCCEEEEEEeCC-CChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 19 HGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTY-CCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 19 ~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
++|+|.... .+ |+.+++ ++++||++||.||++ ||+.|+..++.+++++++|+++++.++++.
T Consensus 4 ~~P~f~l~~--~~-g~~~~l-~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is 66 (124)
T PF00578_consen 4 KAPDFTLTD--SD-GKTVSL-SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIS 66 (124)
T ss_dssp BGGCEEEET--TT-SEEEEG-GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred CCCCcEeEC--CC-CCEEEH-HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecc
Confidence 577776432 23 789999 899999999999999 999999999999999999999888888764
No 19
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.37 E-value=5.1e-13 Score=89.81 Aligned_cols=49 Identities=8% Similarity=-0.023 Sum_probs=45.8
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
|+.+++ ++++||+|||.|||+||+.|+ +++.|++++++|+++++.|+++
T Consensus 15 G~~v~L-s~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~ 63 (183)
T PRK10606 15 GEVTTL-EKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGF 63 (183)
T ss_pred CCEEeH-HHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEe
Confidence 889999 899999999999999999996 6999999999999999999876
No 20
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.36 E-value=1.2e-12 Score=79.89 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=31.5
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhC
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIPILIRHILE 74 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~ 74 (89)
+.+|++|||+|||+||++|+.++|.+++++++++
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~ 45 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN 45 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC
Confidence 3479999999999999999999999999999993
No 21
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.34 E-value=2e-12 Score=86.35 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=42.1
Q ss_pred ccCCCCccccccccC-CCcccccccC-CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 18 FHGRDFCTKQEWMNT-TEPLSLNSHL-KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 18 ~~ap~~~~~~~~~~~-g~~~~l~~~~-~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
-.+|+|+... ++. |+.+++ +.. +||+++|+||++||++|++++|.++++++ +++.++++
T Consensus 43 ~~~p~f~l~~--~~g~g~~~~~-~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v 103 (185)
T PRK15412 43 KPVPKFRLES--LENPGQFYQA-DVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGM 103 (185)
T ss_pred CCCCCcCCcc--CCCCCccccH-HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEE
Confidence 3567776322 221 355555 444 89999999999999999999999999864 35666544
No 22
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.34 E-value=2.6e-12 Score=83.72 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=52.0
Q ss_pred cccCCCCccccccccCCCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 17 IFHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 17 ~~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
...+|+++. ..++ |+.+++ ++.+||+++|+||++||++|+...+.+.+++++++++++.++.+
T Consensus 38 g~~~p~~~~--~~~~-g~~~~l-~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i 100 (173)
T PRK03147 38 GKEAPNFVL--TDLE-GKKIEL-KDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAV 100 (173)
T ss_pred CCCCCCcEe--ecCC-CCEEeH-HHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 345667752 2234 788998 78899999999999999999999999999999999877777655
No 23
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.31 E-value=4.1e-12 Score=83.74 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=54.6
Q ss_pred CcccccccccCCCCccccccccCCCcccccccCCCCEEEEEEeCCC-ChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 10 VPVPLVAIFHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYC-CINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 10 ~~~p~~~~~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~w-C~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
+..++..+-.+|+|.... .+ |+.+++ ++++||++||+||++| |++|.+++|.++++++++. ++.++++.
T Consensus 14 ~~~~~~~G~~~P~f~l~~--~~-g~~v~l-~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs 83 (167)
T PRK00522 14 AGSLPQVGDKAPDFTLVA--ND-LSDVSL-ADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCIS 83 (167)
T ss_pred eCCCCCCCCCCCCeEEEc--CC-CcEEeh-HHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEe
Confidence 334444556788887433 23 788999 8899999999999999 9999999999999999984 67777653
No 24
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.30 E-value=4.1e-12 Score=85.44 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=41.3
Q ss_pred cCCCCccccccccCCCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 19 HGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 19 ~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
..++|+. ..|+.+++ ++++ +|+||++||++|++++|.|++++++|+ +.++++
T Consensus 54 ~~~~f~l-----~dG~~v~l-sd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g---~~Vi~V 105 (181)
T PRK13728 54 APRWFRL-----SNGRQVNL-ADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG---FSVFPY 105 (181)
T ss_pred CCCccCC-----CCCCEeeh-hHce----EEEEECCCCHhHHHHHHHHHHHHHHcC---CEEEEE
Confidence 4556653 23899999 7877 777999999999999999999999983 555543
No 25
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.30 E-value=3.8e-12 Score=81.18 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=52.3
Q ss_pred ccCCCCccccccccCCCcccccccCCC-CEEEEEEe-CCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 18 FHGRDFCTKQEWMNTTEPLSLNSHLKN-KIVIMDFF-TYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 18 ~~ap~~~~~~~~~~~g~~~~l~~~~~g-k~vvv~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
..+|+|.... .+ |+.+++ ++++| |+++|.|| ++||+.|.+.+|.+++++++++++++.++++.
T Consensus 5 ~~~p~~~l~~--~~-g~~v~l-~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs 69 (149)
T cd03018 5 DKAPDFELPD--QN-GQEVRL-SEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGIS 69 (149)
T ss_pred CcCCCcEecC--CC-CCEEeH-HHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 3566775332 23 889999 89999 99999998 99999999999999999999998888887653
No 26
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.30 E-value=6.5e-12 Score=76.49 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=33.2
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeE
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTH 79 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~ 79 (89)
.+++|+|+|||+||++|+.+.|.+++++++++++.+.
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~ 52 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLH 52 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEE
Confidence 6899999999999999999999999999999865433
No 27
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.29 E-value=4.7e-12 Score=80.57 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=49.1
Q ss_pred ccCCCCccccccccCCCcccccccCCCCEEEEEEeCCC-ChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 18 FHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYC-CINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 18 ~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~w-C~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
-.+|+|.... .+ |+.+++ ++++||++||+||++| |++|++++|.|++++++++ ++.+|++.
T Consensus 4 ~~aP~f~l~~--~~-g~~~~l-~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is 65 (143)
T cd03014 4 DKAPDFTLVT--SD-LSEVSL-ADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTIS 65 (143)
T ss_pred CCCCCcEEEC--CC-CcEEeH-HHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEE
Confidence 3577776432 23 788999 8899999999999999 6999999999999999985 56666553
No 28
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.29 E-value=7.7e-12 Score=78.59 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=31.9
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
.+++|||+|||+||++|+.+.|.++++++++++.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~ 46 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF 46 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc
Confidence 5789999999999999999999999999999865
No 29
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.28 E-value=5e-12 Score=79.94 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=49.5
Q ss_pred CCCCccccccccCCCcccccccCCCCEEEEEEeCCCChh-hhhhccHHHHHHHHhCcCC---eEEEEEE
Q psy6924 20 GRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCIN-CMHILPIPILIRHILEYKR---THIIKTF 84 (89)
Q Consensus 20 ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~wC~~-C~~~~p~l~~l~~~~~~~~---~~vi~~~ 84 (89)
+|+|.... . .|+++++ ++++||++||.||++||++ |.++++.++++++++++++ +.++++.
T Consensus 2 ~p~f~l~~--~-~g~~~~l-~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs 66 (142)
T cd02968 2 GPDFTLTD--Q-DGRPVTL-SDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFIS 66 (142)
T ss_pred CCceEEEc--C-CCCEEch-HHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEE
Confidence 45665322 2 2788999 7889999999999999998 9999999999999998864 7776553
No 30
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.28 E-value=7.1e-12 Score=82.22 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=51.8
Q ss_pred cCCCCccccccccCCCcccccccC-CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 19 HGRDFCTKQEWMNTTEPLSLNSHL-KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 19 ~ap~~~~~~~~~~~g~~~~l~~~~-~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
.+|+|+... .+ |+.+++ +++ +|+++||+||++||+.|.++++.|++++++|+++++.++++.
T Consensus 3 ~~p~f~l~~--~~-g~~v~l-~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is 65 (171)
T cd02969 3 PAPDFSLPD--TD-GKTYSL-ADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAIN 65 (171)
T ss_pred cCCCccccC--CC-CCEEeH-HHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEe
Confidence 456665332 23 778999 787 999999999999999999999999999999998888888764
No 31
>KOG0907|consensus
Probab=99.26 E-value=8.2e-12 Score=77.51 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=32.8
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
...+|++||+|+|+|||||+.+.|.+.+|+++|++
T Consensus 18 ~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~ 52 (106)
T KOG0907|consen 18 EAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD 52 (106)
T ss_pred hCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC
Confidence 44579999999999999999999999999999998
No 32
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.26 E-value=6.1e-12 Score=84.27 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=53.1
Q ss_pred cccCCCCccccccccCCC--cccccccCCCCEEEEEEe-CCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 17 IFHGRDFCTKQEWMNTTE--PLSLNSHLKNKIVIMDFF-TYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 17 ~~~ap~~~~~~~~~~~g~--~~~l~~~~~gk~vvv~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
+-.+|+|+... +.+ |+ .+++ ++++||++||.|| ++||+.|..+++.|++++++++++++.+|++.
T Consensus 5 G~~aP~f~l~~-~~~-g~~~~~sl-~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS 72 (187)
T TIGR03137 5 NTEIKPFKATA-YHN-GEFVEVTD-EDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVS 72 (187)
T ss_pred CCcCCCcEeee-ccC-CceeEecH-HHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34688887432 112 54 5777 7899999999999 99999999999999999999998888888764
No 33
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.26 E-value=7.5e-12 Score=82.51 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=51.7
Q ss_pred cCCCCcccccccc--CCCcccccccCCCCEEEEEEe-CCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 19 HGRDFCTKQEWMN--TTEPLSLNSHLKNKIVIMDFF-TYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 19 ~ap~~~~~~~~~~--~g~~~~l~~~~~gk~vvv~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
.+|+|..... .+ .++.+++ ++++||++||.|| ++||+.|..+++.|++++++|+++++.++.+.
T Consensus 4 ~aP~f~~~~~-~g~~~~~~~~l-~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is 70 (173)
T cd03015 4 KAPDFKATAV-VPNGEFKEISL-SDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVS 70 (173)
T ss_pred cCCCCEeecc-cCCCCceEEeh-HHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5677763221 11 1268899 8899999999999 89999999999999999999998888888764
No 34
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.25 E-value=9.2e-12 Score=78.54 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=50.2
Q ss_pred CCCCccccccccCCCcccccccCCCCEEEEEEe-CCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 20 GRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFF-TYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 20 ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
+|+|.... .+ |+.+++ ++++||+++|.|| ++||+.|..+++.+.+++++++++++.++++
T Consensus 3 ~p~f~l~~--~~-g~~~~l-~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~i 63 (140)
T cd03017 3 APDFTLPD--QD-GETVSL-SDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGV 63 (140)
T ss_pred CCCccccC--CC-CCEEeH-HHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 56665322 23 889999 8999999999999 5899999999999999999999888887765
No 35
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.24 E-value=2.2e-11 Score=81.71 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=42.9
Q ss_pred cccCCCCccccccccCCCcccccc-cCCCCEEEEEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 17 IFHGRDFCTKQEWMNTTEPLSLNS-HLKNKIVIMDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 17 ~~~ap~~~~~~~~~~~g~~~~l~~-~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
+-.+|+|...+ .+ |+.+++.. ..+||+++|+||++||++|++++|.++++++++
T Consensus 49 G~~aP~f~l~d--~~-G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~ 103 (189)
T TIGR02661 49 GDAAPIFNLPD--FD-GEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE 103 (189)
T ss_pred CCcCCCcEecC--CC-CCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc
Confidence 34678886433 33 78888721 369999999999999999999999999998765
No 36
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.22 E-value=2.1e-11 Score=75.42 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=35.6
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
..++++++|+|||+||++|+.+.|.++++++++++.++.+.
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~ 61 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIA 61 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEE
Confidence 34789999999999999999999999999999986554443
No 37
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.22 E-value=2.5e-11 Score=80.17 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=43.0
Q ss_pred cccCCCCccccccccCCC--cccccccC-CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 17 IFHGRDFCTKQEWMNTTE--PLSLNSHL-KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 17 ~~~ap~~~~~~~~~~~g~--~~~l~~~~-~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
+..+|+|+... .+ |+ .+++ ++. +||+++|+||++||++|++++|.+++++++ ++.+|++
T Consensus 37 G~~ap~f~l~~--~~-G~~~~~~~-~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V 98 (173)
T TIGR00385 37 GKPVPAFPLAA--LR-EPLQAYTP-EAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGV 98 (173)
T ss_pred CCCCCCccccc--cC-CCCcccCH-HHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEE
Confidence 34688887432 22 44 4554 454 799999999999999999999999988653 4555544
No 38
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.22 E-value=1.2e-11 Score=81.09 Aligned_cols=32 Identities=13% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILE 74 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~ 74 (89)
.++..+|+|||+||++|++++|.+++++++|+
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~ 80 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG 80 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC
Confidence 34566999999999999999999999999983
No 39
>PHA02278 thioredoxin-like protein
Probab=99.21 E-value=2.1e-11 Score=75.10 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=30.6
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.++++|||+|||+||++|+.+.|.++++++++..
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~ 45 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI 45 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC
Confidence 3689999999999999999999999999987544
No 40
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.21 E-value=1.6e-11 Score=79.14 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=52.9
Q ss_pred cccCCCCccccccccCCCcccccccCCCCEEEEEEeCC-CChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 17 IFHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTY-CCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 17 ~~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
+-.+|+|.... ++ |+.+++ ++++||++||.||++ ||+.|+.+.+.+++++++++++++.+|++.
T Consensus 7 g~~~p~f~l~~--~~-G~~~~l-~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is 71 (154)
T PRK09437 7 GDIAPKFSLPD--QD-GEQVSL-TDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGIS 71 (154)
T ss_pred CCcCCCcEeeC--CC-CCEEeH-HHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 44677876332 23 788999 889999999999986 688899999999999999999888888663
No 41
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.21 E-value=2e-11 Score=76.84 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=50.2
Q ss_pred CCCCccccccccCCCcccccccCCCCEEEEEEe-CCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 20 GRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFF-TYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 20 ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
+|+|.... ++ |+++++ ++++||+++|.|| ++||+.|..+++.+++++++++++++.++++.
T Consensus 2 ~p~f~l~~--~~-g~~~~l-~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is 63 (140)
T cd02971 2 APDFTLPA--TD-GGEVSL-SDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVS 63 (140)
T ss_pred CCCceecc--CC-CcEEeh-HHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45565322 23 789999 7889999999999 78999999999999999999987787777654
No 42
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.19 E-value=3.6e-11 Score=77.61 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=33.1
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
..+|+++||+|||+||++|+.+.|.+++++++|+++
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~ 52 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ 52 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC
Confidence 357999999999999999999999999999999764
No 43
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.19 E-value=4.1e-11 Score=75.27 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=31.8
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
++|+|||+|+|+||++|+.+.|.+++++++|++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~ 45 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK 45 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC
Confidence 799999999999999999999999999999975
No 44
>KOG0910|consensus
Probab=99.18 E-value=3e-11 Score=78.87 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=32.1
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
..++||+|+|||+||+||+.+.|.|+++.++|.++
T Consensus 59 ~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~ 93 (150)
T KOG0910|consen 59 NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK 93 (150)
T ss_pred ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe
Confidence 36899999999999999999999999999999664
No 45
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.18 E-value=5.7e-11 Score=74.31 Aligned_cols=35 Identities=3% Similarity=-0.037 Sum_probs=32.5
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
..+++++|+|||+||++|+.++|.++++++++++.
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~ 61 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ 61 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC
Confidence 47889999999999999999999999999999764
No 46
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.17 E-value=7.1e-11 Score=70.42 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=32.2
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
.++++++|+||++||++|+++.|.++++++++++.
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~ 44 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ 44 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc
Confidence 36889999999999999999999999999999763
No 47
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.16 E-value=5.7e-11 Score=75.28 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=46.0
Q ss_pred CCCCccccccccCCCcccccccC-CCCEEEEE-EeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 20 GRDFCTKQEWMNTTEPLSLNSHL-KNKIVIMD-FFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 20 ap~~~~~~~~~~~g~~~~l~~~~-~gk~vvv~-Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
+|+|+... .+ |+++++ +++ ++++++|. ||++||++|+.++|.|++++++++++++.+|++.
T Consensus 2 ~p~f~l~~--~~-g~~~~l-~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~ 64 (149)
T cd02970 2 APDFELPD--AG-GETVTL-SALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVG 64 (149)
T ss_pred CCCccccC--CC-CCEEch-HHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEe
Confidence 56665322 23 788888 665 34555444 5799999999999999999999998888888764
No 48
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.16 E-value=7.1e-11 Score=72.58 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=35.4
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
..|++++|.||++||++|+++.|.+++++++++++++.+.
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~ 58 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVA 58 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEE
Confidence 3689999999999999999999999999999987665554
No 49
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.15 E-value=9.8e-11 Score=69.87 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=43.9
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
|+.+++ ++++||+++|.||++||+.|+...+.+.++.+++++.++.++.+
T Consensus 9 g~~~~~-~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v 58 (116)
T cd02966 9 GKPVSL-SDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGV 58 (116)
T ss_pred CCEeeh-HHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEE
Confidence 678888 78889999999999999999999999999999997666666543
No 50
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.14 E-value=5.9e-11 Score=80.52 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=52.1
Q ss_pred ccccCCCCccccccccCCCcccccccCCCCEEEE-EEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 16 AIFHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIM-DFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 16 ~~~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv-~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
.+-.+|+|+... .+..+++ ++++||++|| .||++||+.|..+++.|++++++++++++.++++.
T Consensus 4 vG~~aP~F~~~~----~~g~v~l-~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS 68 (202)
T PRK13190 4 LGQKAPDFTVNT----TKGPIDL-SKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLS 68 (202)
T ss_pred CCCCCCCcEEec----CCCcEeH-HHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 345788887532 1337898 7899997766 68999999999999999999999999898888764
No 51
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.14 E-value=1.3e-10 Score=70.58 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=31.6
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKR 77 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~ 77 (89)
++++++|+||++||++|+++.|.++++++++++.+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~ 48 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSG 48 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcC
Confidence 56799999999999999999999999999997543
No 52
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.13 E-value=6.6e-11 Score=79.74 Aligned_cols=66 Identities=8% Similarity=-0.056 Sum_probs=53.3
Q ss_pred ccCCCCccccccccCCCcccccccCCCCEEEEEEe-CCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 18 FHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFF-TYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 18 ~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
-++|+|+...-.-.....+++ ++++||+|||.|| +.||+.|..+++.++++++++.++++.++++.
T Consensus 6 ~~~p~f~~~~~~~g~~~~v~L-~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS 72 (187)
T PRK10382 6 TKIKPFKNQAFKNGEFIEVTE-KDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVS 72 (187)
T ss_pred CcCCCcEEEEEeCCcceEEEH-HHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 468888743321111246777 7899999999999 99999999999999999999999998888775
No 53
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.13 E-value=1.1e-10 Score=75.87 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=32.1
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
.+++|||+|||+||++|+.+.|.|+++++++++.
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~ 55 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF 55 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc
Confidence 6889999999999999999999999999999764
No 54
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.12 E-value=1.5e-10 Score=69.86 Aligned_cols=35 Identities=14% Similarity=0.299 Sum_probs=32.0
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
..+++++|.||++||++|+++.|.++++++++++.
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~ 50 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV 50 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc
Confidence 35689999999999999999999999999999764
No 55
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.12 E-value=1.4e-10 Score=71.80 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=36.9
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
|+.+++ ++.+||+++|+||++||++|+.++|.++++++++
T Consensus 10 g~~~~~-~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~ 49 (123)
T cd03011 10 GEQFDL-ESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY 49 (123)
T ss_pred CCEeeH-HHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC
Confidence 788888 7889999999999999999999999999998773
No 56
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.10 E-value=7.4e-11 Score=79.51 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=33.6
Q ss_pred CcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHH
Q psy6924 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRH 71 (89)
Q Consensus 34 ~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~ 71 (89)
++.+. ++++||+.+|+|||+||++|+.++|.++++.+
T Consensus 50 ~~~~~-~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~ 86 (184)
T TIGR01626 50 QPWGS-AELAGKVRVVHHIAGRTSAKEXNASLIDAIKA 86 (184)
T ss_pred eeccH-HHcCCCEEEEEEEecCCChhhccchHHHHHHH
Confidence 36777 78999999999999999999999999999954
No 57
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.10 E-value=2e-10 Score=75.31 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEE
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIK 82 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~ 82 (89)
.++++++|+|||+||++|+++.|.++++++++++.++.+++
T Consensus 45 ~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~ 85 (152)
T cd02962 45 DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGK 85 (152)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEE
Confidence 35789999999999999999999999999999866555543
No 58
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.05 E-value=3.2e-10 Score=79.98 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=57.8
Q ss_pred CCCCcccccccccCCCCcccccccc-CCCcccccccC-CCCEEEEEEe-CCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 7 CSFVPVPLVAIFHGRDFCTKQEWMN-TTEPLSLNSHL-KNKIVIMDFF-TYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 7 ~~~~~~p~~~~~~ap~~~~~~~~~~-~g~~~~l~~~~-~gk~vvv~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
|.-++.++. +-.+|+|.... ..+ .+..+++ +++ +||++|+.|| ++||+.|..+++.+++++++|+++++.++++
T Consensus 62 ~~~~~~~~v-Gd~aPdF~l~~-~~~g~~~~vsL-sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigI 138 (261)
T PTZ00137 62 CNTVTSSLV-GKLMPSFKGTA-LLNDDLVQFNS-SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGV 138 (261)
T ss_pred ccccccccC-CCCCCCCEeec-ccCCCceEEeH-HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 665555554 45799997432 122 1235788 776 8998888888 8999999999999999999999999988876
Q ss_pred E
Q psy6924 84 F 84 (89)
Q Consensus 84 ~ 84 (89)
.
T Consensus 139 S 139 (261)
T PTZ00137 139 S 139 (261)
T ss_pred E
Confidence 5
No 59
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.05 E-value=4.4e-10 Score=67.61 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=31.9
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
.+|+ ++|+|||+||++|+++.|.++++++++++.++.+.
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~ 53 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVA 53 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEE
Confidence 3566 67999999999999999999999998765554433
No 60
>PRK09381 trxA thioredoxin; Provisional
Probab=99.05 E-value=4.7e-10 Score=68.43 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=31.8
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
.+++++|+||++||++|+++.|.+++++++++++
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~ 53 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK 53 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC
Confidence 5789999999999999999999999999999864
No 61
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.04 E-value=6.3e-10 Score=67.25 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.+++++|+|||+||++|+++.|.++++++++++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~ 50 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG 50 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC
Confidence 567999999999999999999999999999865
No 62
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.03 E-value=1.7e-10 Score=72.31 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=35.4
Q ss_pred cccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc-CCeEEE
Q psy6924 35 PLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEY-KRTHII 81 (89)
Q Consensus 35 ~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~~~vi 81 (89)
.++. +..++|+|+|+|||+||++|+.+.|.+.+..+.... .+++.+
T Consensus 11 al~~-A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v 57 (117)
T cd02959 11 GIKE-AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMV 57 (117)
T ss_pred HHHH-HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEE
Confidence 3444 456899999999999999999999999998765433 345444
No 63
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.01 E-value=8.9e-10 Score=66.83 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=31.5
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
.+++++|+|||+||++|+++.|.++++++++++.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~ 50 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL 50 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC
Confidence 5889999999999999999999999999998753
No 64
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.00 E-value=6.4e-10 Score=68.77 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=31.2
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
++++|+|+||++||++|+.+.|.++++++++++-
T Consensus 23 ~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v 56 (113)
T cd02957 23 KGTRVVVHFYEPGFPRCKILDSHLEELAAKYPET 56 (113)
T ss_pred CCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCc
Confidence 3689999999999999999999999999999753
No 65
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.99 E-value=3.3e-10 Score=80.13 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=35.9
Q ss_pred cccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhC
Q psy6924 35 PLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILE 74 (89)
Q Consensus 35 ~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~ 74 (89)
...+ ++++|+++||+||++||++|++++|.|++++++|+
T Consensus 158 ~~~l-~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg 196 (271)
T TIGR02740 158 DRVM-KDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG 196 (271)
T ss_pred HHHH-HHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC
Confidence 4666 78899999999999999999999999999999984
No 66
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.99 E-value=9.1e-10 Score=69.61 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCCCEEEEEEeC-------CCChhhhhhccHHHHHHHHhCc
Q psy6924 42 LKNKIVIMDFFT-------YCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 42 ~~gk~vvv~Fwa-------~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.+|++|+|+||| +||++|+.+.|.++++.+++++
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~ 59 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE 59 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC
Confidence 368999999999 9999999999999999999984
No 67
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.99 E-value=7.7e-10 Score=67.05 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHH---HHHHHHhCcCCeEEE
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIP---ILIRHILEYKRTHII 81 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~~~vi 81 (89)
..|++++|+||++||++|+++.+.+ .++++.+++ ++.++
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~ 50 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLL 50 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEE
Confidence 4689999999999999999999887 678888875 55544
No 68
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.99 E-value=1.2e-09 Score=65.51 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKR 77 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~ 77 (89)
++++++|+||++||++|+++.|.++++++++++++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~ 50 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG 50 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC
Confidence 56799999999999999999999999999987533
No 69
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.98 E-value=1.2e-09 Score=65.36 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=28.9
Q ss_pred CEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 45 KIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 45 k~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
++++|+|||+||++|+.++|.++++++++++
T Consensus 17 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~ 47 (102)
T cd03005 17 GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNN 47 (102)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhc
Confidence 3599999999999999999999999999976
No 70
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.97 E-value=1.5e-09 Score=64.90 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=31.4
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
.+++++|+||++||++|+++.|.++++++++++.
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~ 50 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD 50 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC
Confidence 4689999999999999999999999999999873
No 71
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.4e-10 Score=79.17 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=34.9
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
..+.+||||+||++||++|++..|.|+++.++|+++ +.+.
T Consensus 40 ~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~La 79 (304)
T COG3118 40 SSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLA 79 (304)
T ss_pred HccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEE
Confidence 457789999999999999999999999999999875 4433
No 72
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.95 E-value=9.8e-10 Score=75.43 Aligned_cols=63 Identities=6% Similarity=-0.161 Sum_probs=51.6
Q ss_pred ccCCCCccccccccCCCcccccccCCCCEE-EEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 18 FHGRDFCTKQEWMNTTEPLSLNSHLKNKIV-IMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 18 ~~ap~~~~~~~~~~~g~~~~l~~~~~gk~v-vv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
-.+|+|+.... .|+...+ ++++||++ |+.||++||+.|..+++.+++++++|+++++.+|++.
T Consensus 6 d~aPdF~l~t~---~G~~~~~-~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS 69 (215)
T PRK13599 6 EKFPSMEVVTT---QGVKRLP-EDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLS 69 (215)
T ss_pred CCCCCCEeECC---CCcEecH-HHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 47888874322 2666665 78899975 6899999999999999999999999999998888764
No 73
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.94 E-value=2.5e-09 Score=63.60 Aligned_cols=30 Identities=10% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCEEEEEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 44 NKIVIMDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 44 gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
+++|+|+||++||++|+++.|.++++++++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~ 43 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA 43 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh
Confidence 799999999999999999999999999986
No 74
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.94 E-value=2.8e-09 Score=63.39 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=32.8
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKR 77 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~ 77 (89)
++++++|+||++||++|+++.+.++++++++++.+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~ 46 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP 46 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC
Confidence 78999999999999999999999999999998764
No 75
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.93 E-value=1.2e-09 Score=74.01 Aligned_cols=61 Identities=8% Similarity=0.101 Sum_probs=49.0
Q ss_pred cCCCCccccccccCCCcccccccCCC-CE-EEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 19 HGRDFCTKQEWMNTTEPLSLNSHLKN-KI-VIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 19 ~ap~~~~~~~~~~~g~~~~l~~~~~g-k~-vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
.+|+|..... +..+++ ++++| |+ +|+.||++||+.|..+++.|++++++++++++.++++.
T Consensus 4 ~aP~F~~~~~----~g~~~l-~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS 66 (203)
T cd03016 4 TAPNFEADTT----HGPIKF-HDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLS 66 (203)
T ss_pred CCCCeEEecC----CCcEeH-HHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 5777764321 236888 78888 64 56699999999999999999999999999998888764
No 76
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.93 E-value=1.6e-09 Score=73.16 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=54.3
Q ss_pred cccCCCCcccccccc-CCCcccccccCCCCEEEEEEeC-CCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 17 IFHGRDFCTKQEWMN-TTEPLSLNSHLKNKIVIMDFFT-YCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 17 ~~~ap~~~~~~~~~~-~g~~~~l~~~~~gk~vvv~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
+-.+|+|.......+ +++.+++ ++++||+++|.||+ .||+.|..+++.+.+++++|+++++.+|++.
T Consensus 9 G~~aPdF~~~~~~~~~~~~~v~l-~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS 77 (199)
T PTZ00253 9 NHPAPSFEEVALMPNGSFKKISL-SSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACS 77 (199)
T ss_pred CCcCCCCEeeccccCCCCcEEeH-HHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 347888874322112 2578999 89999999999995 7899999999999999999999998888765
No 77
>PRK15000 peroxidase; Provisional
Probab=98.93 E-value=2e-09 Score=73.02 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=49.9
Q ss_pred ccCCCCccccccccCCCc---ccccccC-CCCEEEEEEeCC-CChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 18 FHGRDFCTKQEWMNTTEP---LSLNSHL-KNKIVIMDFFTY-CCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 18 ~~ap~~~~~~~~~~~g~~---~~l~~~~-~gk~vvv~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
-.+|+|+.... ...|+. .++ +++ +||+|||.||+. ||+.|..+++.+++++++|+++++.++++.
T Consensus 6 ~~aPdF~~~~~-~~~g~~~~~~~l-~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS 75 (200)
T PRK15000 6 RQAPDFTAAAV-LGSGEIVDKFNF-KQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVS 75 (200)
T ss_pred CcCCCCEeecc-cCCCceeeeeeH-HHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788864321 122343 344 343 899999999995 999999999999999999999999888765
No 78
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.93 E-value=2.5e-09 Score=65.29 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=29.8
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.+++++|+|||+||++|+++.|.++++++++++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~ 49 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKE 49 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhh
Confidence 568999999999999999999999999988643
No 79
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.90 E-value=3.5e-09 Score=65.88 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=30.4
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.+++++|+||++||++|+.+.|.++++++++++
T Consensus 18 ~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~ 50 (114)
T cd02992 18 SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRK 50 (114)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHh
Confidence 357999999999999999999999999998865
No 80
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.90 E-value=4.1e-09 Score=62.68 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=33.8
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
.++++||+||++||++|+.+.|.++++++++++ ++.++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~ 53 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFA 53 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEE
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccc
Confidence 479999999999999999999999999999987 44443
No 81
>PRK10996 thioredoxin 2; Provisional
Probab=98.90 E-value=3.4e-09 Score=68.03 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=33.3
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
.+++|+|+||++||++|+++.|.+++++++++++ +.++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~ 88 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFV 88 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEE
Confidence 5899999999999999999999999999988764 4443
No 82
>PTZ00051 thioredoxin; Provisional
Probab=98.90 E-value=3.5e-09 Score=63.17 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=30.7
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.+++++|+||++||++|+++.|.++++++++++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~ 49 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK 49 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC
Confidence 578999999999999999999999999998865
No 83
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.89 E-value=4.7e-09 Score=62.74 Aligned_cols=33 Identities=18% Similarity=0.435 Sum_probs=30.6
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.+++++|.||++||++|+++.|.+++++++++.
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~ 49 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN 49 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC
Confidence 467999999999999999999999999999874
No 84
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.88 E-value=2.3e-09 Score=73.58 Aligned_cols=64 Identities=8% Similarity=-0.068 Sum_probs=50.2
Q ss_pred cccCCCCccccccccCCCcccccccCCCCEEEE-EEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 17 IFHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIM-DFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 17 ~~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv-~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
+-.+|+|..... + |+ +.+.++++||++|| .||++||+.|..+++.|++++++|++++..++++.
T Consensus 10 G~~aPdF~l~~~--~-G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS 74 (215)
T PRK13191 10 GEKFPEMEVITT--H-GK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLS 74 (215)
T ss_pred CCcCCCCEeecC--C-CC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 347889874432 2 44 55524479997665 99999999999999999999999999998888764
No 85
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.88 E-value=3.2e-09 Score=66.02 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=30.8
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.+++|+|+||++||++|+.+.|.++++++++++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~ 53 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE 53 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999999875
No 86
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.87 E-value=3.4e-09 Score=79.88 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
++++|||+|||+||++|+.+.|.+++++++++++++.++
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~ 408 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVA 408 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEE
Confidence 788999999999999999999999999999987654443
No 87
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.87 E-value=2.9e-09 Score=66.48 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=30.3
Q ss_pred CCC-CEEEEEEeCCCChhhhhhccHHH---HHHHHhCcCCeEEE
Q psy6924 42 LKN-KIVIMDFFTYCCINCMHILPIPI---LIRHILEYKRTHII 81 (89)
Q Consensus 42 ~~g-k~vvv~Fwa~wC~~C~~~~p~l~---~l~~~~~~~~~~vi 81 (89)
-.+ |+|+|+||++||++|+++.|.+. ++.+.+++ ++.++
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~ 53 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVV 53 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEE
Confidence 467 99999999999999999998874 56666653 45444
No 88
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.86 E-value=8.4e-09 Score=61.94 Aligned_cols=33 Identities=12% Similarity=0.324 Sum_probs=31.2
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.+++|++.||++||+.|+.+.|.++++++++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~ 44 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG 44 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC
Confidence 788999999999999999999999999999875
No 89
>KOG2501|consensus
Probab=98.86 E-value=2.3e-09 Score=70.61 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=37.9
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCC
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKR 77 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~ 77 (89)
|..+.....++||+|.++|.|.||++||++.|.+.+++++.++.+
T Consensus 22 ~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~ 66 (157)
T KOG2501|consen 22 GTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNA 66 (157)
T ss_pred CccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcC
Confidence 444444246899999999999999999999999999999987753
No 90
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.84 E-value=4.9e-09 Score=69.92 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=30.4
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
++++|||+||++||++|+.+.|.|++++++|+.
T Consensus 82 ~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~ 114 (175)
T cd02987 82 KDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA 114 (175)
T ss_pred CCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC
Confidence 456999999999999999999999999999975
No 91
>KOG0908|consensus
Probab=98.84 E-value=3.4e-09 Score=74.43 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=33.6
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
+...+|.|+|+|+|+||+||++..|.+..++.+|++.
T Consensus 17 s~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~a 53 (288)
T KOG0908|consen 17 SAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGA 53 (288)
T ss_pred hccCceEEEEEEEecccchHHhhhhHHHHhhhhCccc
Confidence 4457899999999999999999999999999999754
No 92
>PRK13189 peroxiredoxin; Provisional
Probab=98.81 E-value=6.3e-09 Score=71.68 Aligned_cols=63 Identities=16% Similarity=0.040 Sum_probs=49.6
Q ss_pred cccCCCCccccccccCCCccccccc-CCCCE-EEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 17 IFHGRDFCTKQEWMNTTEPLSLNSH-LKNKI-VIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 17 ~~~ap~~~~~~~~~~~g~~~~l~~~-~~gk~-vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
+-.+|+|..... + | .+++ .+ ++||+ +|+.||++||+.|..+++.+++++++|+++++.+|++.
T Consensus 12 G~~aPdF~~~~~--~-g-~~~l-~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS 76 (222)
T PRK13189 12 GDKFPEFEVKTT--H-G-PIKL-PDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLS 76 (222)
T ss_pred CCcCCCcEeEcC--C-C-CEee-HHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 457888874432 2 3 4677 45 59995 55688999999999999999999999999998888764
No 93
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.81 E-value=1.3e-08 Score=60.95 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=30.7
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
.+++++|.||++||++|+++.|.+.+++++++++
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~ 50 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI 50 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC
Confidence 4677999999999999999999999999998753
No 94
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.80 E-value=8.7e-09 Score=71.31 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=31.2
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
.+++++|+|||+||++|+++.|.++++++++++.
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~ 84 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ 84 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC
Confidence 3689999999999999999999999999999863
No 95
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.78 E-value=9.9e-09 Score=69.47 Aligned_cols=36 Identities=8% Similarity=0.061 Sum_probs=31.9
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCe
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRT 78 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~ 78 (89)
++++|||+||++||++|+.+.|.|++++++|+.-.|
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkF 136 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKF 136 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEE
Confidence 457999999999999999999999999999975333
No 96
>PTZ00102 disulphide isomerase; Provisional
Probab=98.78 E-value=1.1e-08 Score=75.79 Aligned_cols=42 Identities=14% Similarity=0.323 Sum_probs=35.7
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
..|++|+|+|||+||++|+.+.|.++++++++++.+.+++..
T Consensus 373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~ 414 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAK 414 (477)
T ss_pred cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEE
Confidence 468999999999999999999999999999998755444443
No 97
>PLN02309 5'-adenylylsulfate reductase
Probab=98.77 E-value=1.3e-08 Score=76.67 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=35.3
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
.+++++|+|||+||++|+++.|.++++++++++.++.+.
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~ 402 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVA 402 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEE
Confidence 689999999999999999999999999999987765554
No 98
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.76 E-value=1.7e-08 Score=63.71 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=28.7
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
.|+.++|+|+++|||+|+++.|.|+++.++.
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~ 52 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT 52 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc
Confidence 5778999999999999999999999999884
No 99
>KOG0190|consensus
Probab=98.73 E-value=1.3e-08 Score=77.15 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=38.5
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
....+|-|+|+|+|+||++|++..|.+++|+++|++..-++|+-
T Consensus 380 v~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAK 423 (493)
T KOG0190|consen 380 VLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAK 423 (493)
T ss_pred hhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEE
Confidence 34578999999999999999999999999999999986666653
No 100
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.73 E-value=3.7e-08 Score=58.19 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=30.3
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.+++++|.||++||++|+.+.+.++++++++++
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~ 45 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG 45 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC
Confidence 467999999999999999999999999988875
No 101
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.73 E-value=3.2e-08 Score=57.93 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=32.6
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
...++++++++||++||++|+..+|.+.++++++..
T Consensus 28 ~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~ 63 (127)
T COG0526 28 SELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG 63 (127)
T ss_pred hhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC
Confidence 344599999999999999999999999999999986
No 102
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.69 E-value=5.3e-08 Score=57.00 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=29.6
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILE 74 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~ 74 (89)
++++++|.||++||++|+.+.|.++++++.++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~ 45 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELK 45 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc
Confidence 55599999999999999999999999999985
No 103
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.64 E-value=4e-08 Score=61.04 Aligned_cols=31 Identities=6% Similarity=-0.022 Sum_probs=28.2
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
+++.++|.||++||++|+.+.|.++++++++
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~ 51 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS 51 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999887
No 104
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.55 E-value=1.4e-07 Score=69.19 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=31.6
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.++.|+|.||++||++|+.+.|.++++++++++
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~ 395 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKD 395 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhc
Confidence 689999999999999999999999999999987
No 105
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.54 E-value=1.5e-07 Score=58.87 Aligned_cols=35 Identities=0% Similarity=-0.120 Sum_probs=32.2
Q ss_pred CCCCEEEEEEeCCC--ChhhhhhccHHHHHHHHhCcC
Q psy6924 42 LKNKIVIMDFFTYC--CINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 42 ~~gk~vvv~Fwa~w--C~~C~~~~p~l~~l~~~~~~~ 76 (89)
..|.++||.||++| ||+|+.+.|.+++++++|+++
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~ 61 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR 61 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc
Confidence 46789999999997 999999999999999999875
No 106
>PTZ00062 glutaredoxin; Provisional
Probab=98.52 E-value=1.2e-07 Score=64.90 Aligned_cols=32 Identities=0% Similarity=-0.152 Sum_probs=29.3
Q ss_pred CEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 45 KIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 45 k~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
..+|++|||+||++|+++.|.+.+++++|++-
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~ 49 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSL 49 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCc
Confidence 56788999999999999999999999999763
No 107
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.49 E-value=2e-07 Score=54.10 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=28.0
Q ss_pred EEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 48 IMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
.|+||++||++|+.+.|.++++.++++.+ +.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~ 34 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFE 34 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEE
Confidence 37899999999999999999999998754 4444
No 108
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.49 E-value=2e-07 Score=68.30 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=31.6
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKR 77 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~ 77 (89)
++++++|.|||+||++|+++.|.+.++++.+.+.+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~ 51 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKG 51 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcC
Confidence 57899999999999999999999999999887654
No 109
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.47 E-value=4.1e-07 Score=52.08 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=27.9
Q ss_pred CCEEEEEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 44 NKIVIMDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 44 gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
+++++|.||++||+.|+.+.+.++++.++.
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~ 39 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEEY 39 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 389999999999999999999999999883
No 110
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.45 E-value=3.8e-07 Score=52.50 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=26.7
Q ss_pred EEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 47 VIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 47 vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
.|.-||++||++|+...|.+++++++++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~ 31 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA 31 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc
Confidence 567899999999999999999999988643
No 111
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.45 E-value=5.1e-07 Score=56.23 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=46.0
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
|+++++ ++++||+++|.-.|+.|+.-. ....|++|+++|+++++.|+++
T Consensus 11 G~~v~l-~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaF 59 (108)
T PF00255_consen 11 GKPVSL-SKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAF 59 (108)
T ss_dssp SSEEEG-GGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCEECH-HHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEee
Confidence 899999 899999999999999999998 7789999999999999998864
No 112
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.9e-07 Score=60.16 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=57.9
Q ss_pred ccccccCCCCccccccccCCCcccccccCCCCEEEEEEeC-CCChhhhhhccHHHHHHHHhCcCCeEEEEEEe
Q psy6924 14 LVAIFHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFT-YCCINCMHILPIPILIRHILEYKRTHIIKTFQ 85 (89)
Q Consensus 14 ~~~~~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~ 85 (89)
+..+-.||+|+...+ +|+.++| ++++||+|||+||= .+.|.|-.++-.+++..+++.+.+.+|+++.+
T Consensus 4 l~~G~~aPdF~Lp~~---~g~~v~L-sd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~ 72 (157)
T COG1225 4 LKVGDKAPDFELPDQ---DGETVSL-SDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISP 72 (157)
T ss_pred CCCCCcCCCeEeecC---CCCEEeh-HHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 344568999985543 3788999 89999999999994 59999999999999999999999999998864
No 113
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.40 E-value=6.2e-07 Score=53.68 Aligned_cols=33 Identities=9% Similarity=-0.025 Sum_probs=31.5
Q ss_pred CCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 44 NKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 44 gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
|+++++.|+++||++|..+.|.+++++++|+++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~ 44 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK 44 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe
Confidence 789999999999999999999999999999865
No 114
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.37 E-value=4.5e-07 Score=69.87 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=28.9
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHH---HHHHHHhCc
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIP---ILIRHILEY 75 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l---~~l~~~~~~ 75 (89)
..+||+|+|+|||+||++|+.+.+.. .++++++++
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~ 508 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD 508 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC
Confidence 34689999999999999999987765 677777753
No 115
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.37 E-value=7.1e-07 Score=56.43 Aligned_cols=31 Identities=0% Similarity=-0.083 Sum_probs=27.9
Q ss_pred CCCEEEEEEeCCCChh--hh--hhccHHHHHHHHh
Q psy6924 43 KNKIVIMDFFTYCCIN--CM--HILPIPILIRHIL 73 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~--C~--~~~p~l~~l~~~~ 73 (89)
.+.++|+.||++||++ |+ ++.|.+.++++++
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~ 60 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQV 60 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcchhhHHHHHHHH
Confidence 4569999999999988 99 8889999999887
No 116
>PTZ00102 disulphide isomerase; Provisional
Probab=98.35 E-value=7.4e-07 Score=66.12 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=30.8
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
+++.++|.|||+||++|+++.|.+.++++++.+.
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~ 81 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEK 81 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhc
Confidence 6789999999999999999999999999887653
No 117
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.31 E-value=9.5e-07 Score=51.63 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=29.5
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHH---HHHHHHhCcCCeEEEE
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIP---ILIRHILEYKRTHIIK 82 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~~~vi~ 82 (89)
+..++|+++|+|+++||++|+.+...+ .++.+.+. ++++.+.
T Consensus 13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~ 57 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVK 57 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEE
T ss_pred HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEE
Confidence 455899999999999999999876655 33433333 3455553
No 118
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.4e-06 Score=57.39 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=44.1
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
|+++++ ++++||+++|.-.||.|+.-. +-.-|+.|+++|+++|++|+++
T Consensus 15 G~~~~l-~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgF 63 (162)
T COG0386 15 GEPVSL-SDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGF 63 (162)
T ss_pred CCCccH-HHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEec
Confidence 899999 899999999999999999876 4447899999999999999975
No 119
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.23 E-value=1.3e-06 Score=55.54 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=29.4
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccH--H-HHHHHHhCcCCeEEEE
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPI--P-ILIRHILEYKRTHIIK 82 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~--l-~~l~~~~~~~~~~vi~ 82 (89)
+..++|+|+|+|+|+||++|+.+... - .++.+... +.++.|.
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~Vk 55 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-ENFVPIK 55 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEE
Confidence 45689999999999999999988652 1 24544442 2465554
No 120
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.21 E-value=1.8e-06 Score=52.47 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=23.7
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHH
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIR 70 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~ 70 (89)
-+||++++.||++||++|+.+.+.+.+..
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~ 31 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDN 31 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999988888643
No 121
>PHA02125 thioredoxin-like protein
Probab=98.20 E-value=1.1e-06 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEeCCCChhhhhhccHHHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPILIR 70 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~ 70 (89)
++.||++||++|+...|.++++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~ 24 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE 24 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh
Confidence 68999999999999999998763
No 122
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.20 E-value=2.1e-06 Score=47.99 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=25.2
Q ss_pred EEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 47 VIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 47 vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
-+..|+++||++|++..+.++++.+.+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~ 30 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPN 30 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCc
Confidence 46789999999999999999999877643
No 123
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=98.14 E-value=3.5e-06 Score=54.97 Aligned_cols=65 Identities=20% Similarity=0.149 Sum_probs=48.5
Q ss_pred cCCCCccccccccCCCccccccc-CCCC-EEEEEEeCCCChhhhhh-ccHHHHHHHHhCcCCe-EEEEEE
Q psy6924 19 HGRDFCTKQEWMNTTEPLSLNSH-LKNK-IVIMDFFTYCCINCMHI-LPIPILIRHILEYKRT-HIIKTF 84 (89)
Q Consensus 19 ~ap~~~~~~~~~~~g~~~~l~~~-~~gk-~vvv~Fwa~wC~~C~~~-~p~l~~l~~~~~~~~~-~vi~~~ 84 (89)
.+|+|+....--..|+.+++ ++ ++|| +||+-|.+.||+.|..+ ++.+++.++++.+.+. .|+++.
T Consensus 4 ~aPdF~l~~~~~~~g~~v~L-~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS 72 (155)
T cd03013 4 KLPNVTLFEYVPGPPNPVNL-SELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVS 72 (155)
T ss_pred cCCCeEeeeeccCCCceeeH-HHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEE
Confidence 57777643321112678999 77 5775 56666678899999999 9999999999998887 577765
No 124
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.11 E-value=1.8e-06 Score=55.37 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=24.7
Q ss_pred CcccccccCCCCEEEEEEeCCCChhhhhhccH
Q psy6924 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILPI 65 (89)
Q Consensus 34 ~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~ 65 (89)
+.+.. +.-++|+|+|+|++.||++|+.+...
T Consensus 14 eal~~-Ak~~~Kpvmv~f~sdwC~~Ck~l~k~ 44 (130)
T cd02960 14 EGLYK-AKKSNKPLMVIHHLEDCPHSQALKKA 44 (130)
T ss_pred HHHHH-HHHCCCeEEEEEeCCcCHhHHHHHHH
Confidence 34444 45689999999999999999977654
No 125
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.04 E-value=5.5e-06 Score=56.45 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=27.3
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhC
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILE 74 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~ 74 (89)
.++.++++.||++||++|+.+.+.+++++.+++
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~ 163 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND 163 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC
Confidence 345556666999999999999999999988754
No 126
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.04 E-value=6.9e-06 Score=55.95 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=29.4
Q ss_pred cCCCCEEEEEEeC---CCChhhhhhccHHHHHHHHhCc
Q psy6924 41 HLKNKIVIMDFFT---YCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 41 ~~~gk~vvv~Fwa---~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
..++...++.|.+ +||++|+.+.|.++++++++++
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~ 53 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK 53 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC
Confidence 3455666777888 9999999999999999999954
No 127
>KOG0190|consensus
Probab=98.02 E-value=7.3e-06 Score=62.39 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
.....++|.|||+||++|++.+|.+++.++..+..
T Consensus 40 ~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~ 74 (493)
T KOG0190|consen 40 NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEE 74 (493)
T ss_pred ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhcc
Confidence 35568899999999999999999999999998876
No 128
>KOG1651|consensus
Probab=97.99 E-value=1e-05 Score=53.81 Aligned_cols=50 Identities=16% Similarity=0.067 Sum_probs=46.7
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
|+.+++ +.++||+++|.--||-|+.-...-..|+.|+++|++++++|+++
T Consensus 24 G~~v~l-~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaF 73 (171)
T KOG1651|consen 24 GEYVSL-SQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAF 73 (171)
T ss_pred CCCccH-HHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEe
Confidence 899999 89999999999999999999877789999999999999998854
No 129
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.95 E-value=1.6e-05 Score=47.62 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=36.3
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEE
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIK 82 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~ 82 (89)
.++++.+.+.-|+++||++|+...+.++++.+++++-.+.++.
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd 50 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMID 50 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEE
Confidence 4678889999999999999999999999999988764555544
No 130
>KOG0191|consensus
Probab=97.82 E-value=3e-05 Score=56.94 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=31.7
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
..+++.+|+||++||++|+...|.++++++.+++
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~ 78 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG 78 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcC
Confidence 4678999999999999999999999999999987
No 131
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.81 E-value=3.7e-05 Score=40.04 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=25.6
Q ss_pred EEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEE
Q psy6924 48 IMDFFTYCCINCMHILPIPILIRHILEYKRTHIIK 82 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~ 82 (89)
++.||++||+.|++..+.++++ ++.+.++.++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~ 33 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEA 33 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEE
Confidence 4789999999999999999998 34444555443
No 132
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.78 E-value=7e-05 Score=47.11 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=30.4
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
..++++|+.|+.++||+|+++.|.+.++.+++++
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 3578999999999999999999999999887754
No 133
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.67 E-value=6e-05 Score=48.11 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=28.6
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
+....+..++.|..+|||.|++..|.+.++++..++-.+.++
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i 78 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRII 78 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEE
Confidence 455677899999999999999999999999998764444443
No 134
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.50 E-value=0.00049 Score=43.83 Aligned_cols=38 Identities=13% Similarity=0.313 Sum_probs=32.1
Q ss_pred cccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 35 PLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 35 ~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
...+ ++..++++|+.|+...||+|+++.+.+.++.+++
T Consensus 4 ~~~~-G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~ 41 (162)
T PF13462_consen 4 DPTI-GNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKY 41 (162)
T ss_dssp SEEE-S-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHH
T ss_pred CCee-cCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhc
Confidence 3445 6778899999999999999999999999999998
No 135
>KOG1731|consensus
Probab=97.43 E-value=3.2e-05 Score=59.68 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=31.3
Q ss_pred CEEEEEEeCCCChhhhhhccHHHHHHHHhCcCC-eEEEE
Q psy6924 45 KIVIMDFFTYCCINCMHILPIPILIRHILEYKR-THIIK 82 (89)
Q Consensus 45 k~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~-~~vi~ 82 (89)
+--+|+|+++|||.|+++.|.++++++...... ++.|.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~va 96 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVA 96 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEE
Confidence 467889999999999999999999999877653 44443
No 136
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.38 E-value=7.8e-05 Score=42.08 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.4
Q ss_pred EEEEeCCCChhhhhhccHHHHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPILIRH 71 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~~ 71 (89)
+.-||++||++|++..+.|.++..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~ 25 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA 25 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC
Confidence 567999999999999998877643
No 137
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.29 E-value=0.00017 Score=55.84 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=28.1
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHHH-HHHHHhCcCCeEEE
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIPI-LIRHILEYKRTHII 81 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l~-~l~~~~~~~~~~vi 81 (89)
+.++|+|+|||+|+||-.|+.+.+..- +...+.+-++.+.+
T Consensus 471 ~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlL 512 (569)
T COG4232 471 EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLL 512 (569)
T ss_pred hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEE
Confidence 345679999999999999998776433 44444444444443
No 138
>KOG0912|consensus
Probab=97.27 E-value=0.0002 Score=52.08 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=31.7
Q ss_pred CCEEEEEEeCCCChhhhhhccHHHHHHHH----hCcCCeEEEEE
Q psy6924 44 NKIVIMDFFTYCCINCMHILPIPILIRHI----LEYKRTHIIKT 83 (89)
Q Consensus 44 gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~----~~~~~~~vi~~ 83 (89)
..+|+|+|+|+||+.++..+|.+++.+++ |++ +.+|.+.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~-~kvvwg~ 55 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPE-GKVVWGK 55 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCC-cceEEEE
Confidence 67999999999999999999999988755 454 5555543
No 139
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.22 E-value=0.00058 Score=44.23 Aligned_cols=42 Identities=21% Similarity=0.436 Sum_probs=34.4
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEEee
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQI 86 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~~ 86 (89)
.+++.|++|+...||+|+++.+.+.++.++++++ + .+..+++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~-v-~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD-V-KFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC-c-eEEEcCC
Confidence 7899999999999999999999999999998553 3 3334444
No 140
>KOG0191|consensus
Probab=97.20 E-value=0.00073 Score=49.62 Aligned_cols=33 Identities=15% Similarity=0.362 Sum_probs=30.0
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.....+|.|+++||++|+.+.|.++++.+.+..
T Consensus 161 ~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~ 193 (383)
T KOG0191|consen 161 SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS 193 (383)
T ss_pred cCcceEEEEeccccHHhhhcChHHHHHHHHhcc
Confidence 467889999999999999999999999998875
No 141
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.20 E-value=0.0012 Score=41.82 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=27.7
Q ss_pred CCCCEEEEEEeCC-------CChhhhhhccHHHHHHHHhCc
Q psy6924 42 LKNKIVIMDFFTY-------CCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 42 ~~gk~vvv~Fwa~-------wC~~C~~~~p~l~~l~~~~~~ 75 (89)
..+++++|.|.++ |||.|++..|.+++..++.++
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~ 57 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE 57 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC
Confidence 4678999999976 999999999999999888554
No 142
>KOG4277|consensus
Probab=97.20 E-value=0.0002 Score=52.32 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=30.7
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCe
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRT 78 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~ 78 (89)
.+-..+|+|||+||++|++..|...++-.+.++-+.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~ 77 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGL 77 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCC
Confidence 345789999999999999999999999877777553
No 143
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=97.18 E-value=0.0013 Score=43.58 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=39.3
Q ss_pred CCcccccccCCCCEEEEEEeCCCCh-hhhhhccHHHHHHHHhCcC--CeEEE
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCI-NCMHILPIPILIRHILEYK--RTHII 81 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~-~C~~~~p~l~~l~~~~~~~--~~~vi 81 (89)
|+++++ ++++||+++|.|.-+.|+ .|...+..|.++.++.+++ .+.++
T Consensus 42 G~~~~~-~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v 92 (174)
T PF02630_consen 42 GKTVTL-DDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFV 92 (174)
T ss_dssp SSEEEG-GGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred CCEecH-HHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEE
Confidence 889999 899999999999999995 7999988999998887654 44444
No 144
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.08 E-value=0.00032 Score=40.20 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEeCCCChhhhhhccHHHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPILIR 70 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~ 70 (89)
|+.|+++||++|++..+.|+++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~ 23 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN 23 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC
Confidence 46899999999999999999875
No 145
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.97 E-value=0.0012 Score=38.62 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=27.2
Q ss_pred EEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 48 IMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
|..|+.+||+.|++....|+++.+++++-.+..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~i 36 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYV 36 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEE
Confidence 5679999999999999999999877654444443
No 146
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.96 E-value=0.0012 Score=45.37 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=34.1
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
.++.++.-++.|+.+.|+.|..+.|.++.++++| |+.|+
T Consensus 116 ~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~ 154 (215)
T PF13728_consen 116 KQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVI 154 (215)
T ss_pred HHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEE
Confidence 4567899999999999999999999999999999 45444
No 147
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.85 E-value=0.00087 Score=41.12 Aligned_cols=25 Identities=4% Similarity=-0.029 Sum_probs=21.4
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhcc
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILP 64 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p 64 (89)
+..++|+++|+|+++||++|+.+..
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~ 37 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNR 37 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHH
Confidence 4557999999999999999987653
No 148
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.83 E-value=0.00094 Score=36.81 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=17.7
Q ss_pred EEEEeCCCChhhhhhccHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~ 68 (89)
+..|+++||++|++..+.+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~ 22 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS 22 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH
Confidence 457999999999998877765
No 149
>KOG3425|consensus
Probab=96.78 E-value=0.0047 Score=39.34 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=31.4
Q ss_pred CCCEEEEEEeCC--------CChhhhhhccHHHHHHHHhCcCCeEEEE
Q psy6924 43 KNKIVIMDFFTY--------CCINCMHILPIPILIRHILEYKRTHIIK 82 (89)
Q Consensus 43 ~gk~vvv~Fwa~--------wC~~C~~~~p~l~~l~~~~~~~~~~vi~ 82 (89)
+|+.+.+.|.++ |||.|.+..|.+++..++.+.+ ..+|-
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~-~~~v~ 70 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED-VHFVH 70 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc-eEEEE
Confidence 677799999985 9999999999999998866653 44443
No 150
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.77 E-value=0.0019 Score=40.66 Aligned_cols=27 Identities=15% Similarity=-0.087 Sum_probs=18.7
Q ss_pred CCCEEEEEEeC--CCChhhhhhccHHHHHHHHh
Q psy6924 43 KNKIVIMDFFT--YCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 43 ~gk~vvv~Fwa--~wC~~C~~~~p~l~~l~~~~ 73 (89)
+.+.|||.|+| +||+ . .|..++|+.+|
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~ 45 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESS 45 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHH
Confidence 66889999999 7776 2 35555555554
No 151
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.67 E-value=0.0038 Score=42.29 Aligned_cols=35 Identities=14% Similarity=0.430 Sum_probs=30.1
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHH---HHHHHHhCcC
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIP---ILIRHILEYK 76 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l---~~l~~~~~~~ 76 (89)
..|++.|++|+...||+|.++.+.+ +.+.++++++
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~ 72 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG 72 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC
Confidence 4678999999999999999999876 7888888764
No 152
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.65 E-value=0.0021 Score=45.30 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=34.6
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
+++.++.-++.|+.+.|+.|.++.|.|+.++++| |+.++.+
T Consensus 139 ~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~V 179 (248)
T PRK13703 139 AKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPV 179 (248)
T ss_pred HHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEE
Confidence 4567789999999999999999999999999998 4555433
No 153
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.53 E-value=0.0033 Score=44.54 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=34.3
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEE
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIK 82 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~ 82 (89)
.++.++.-++.|+.+.|+.|.++.|.++.++++|+ +.++.
T Consensus 146 ~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---i~v~~ 185 (256)
T TIGR02739 146 QQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---ISVIP 185 (256)
T ss_pred HHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEE
Confidence 45677899999999999999999999999999994 54443
No 154
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0064 Score=41.48 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=52.4
Q ss_pred cccCCCCccccccccCCC---cccccccCCCCEEEEEEe-CCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 17 IFHGRDFCTKQEWMNTTE---PLSLNSHLKNKIVIMDFF-TYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 17 ~~~ap~~~~~~~~~~~g~---~~~l~~~~~gk~vvv~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
.-++|+|+..... + |. ++++ ++..||.+|+-|| +.--+-|-.+...+.+.+++|+.++..+|++.
T Consensus 6 g~~aP~F~~~a~~-~-~~~~~~i~l-~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS 74 (194)
T COG0450 6 GKKAPDFTANAVL-G-GEIFEEITL-SDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVS 74 (194)
T ss_pred CCcCCCcEEEEEe-c-CceeeEEec-hhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEe
Confidence 3478999854433 3 53 8999 7877899999888 45667788999999999999999999999875
No 155
>smart00594 UAS UAS domain.
Probab=96.30 E-value=0.0031 Score=39.37 Aligned_cols=24 Identities=0% Similarity=-0.007 Sum_probs=20.6
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhc
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHIL 63 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~ 63 (89)
+..++|.++|+|+++||++|+.+.
T Consensus 23 Ak~~~K~~lv~~~~~~c~~c~~~~ 46 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPDSQVFN 46 (122)
T ss_pred HHhhcCCEEEEEeCCCCchHHHHH
Confidence 445789999999999999998754
No 156
>KOG0914|consensus
Probab=96.25 E-value=0.0053 Score=42.97 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=33.5
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeE
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTH 79 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~ 79 (89)
.+.+..+|.|+|.|.+.|++..|.+.++..+|...+..
T Consensus 142 nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lk 179 (265)
T KOG0914|consen 142 NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLK 179 (265)
T ss_pred CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCc
Confidence 35568999999999999999999999999999886643
No 157
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.87 E-value=0.015 Score=33.25 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.2
Q ss_pred EEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 48 IMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
|..|+.+.||.|....+.++++.+..+++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~ 29 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGG 29 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCc
Confidence 46899999999999999999997555543
No 158
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.87 E-value=0.025 Score=38.62 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=36.9
Q ss_pred CCcccccccCCCCEEEEEEeCCCCh-hhhhhccHHHHHHHHhC
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCI-NCMHILPIPILIRHILE 74 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~-~C~~~~p~l~~l~~~~~ 74 (89)
|+++++ .+++||+++|.|.=+.|| -|..+...+.++.++..
T Consensus 57 G~~~~~-~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~ 98 (207)
T COG1999 57 GKPFTL-KDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLG 98 (207)
T ss_pred CCEeec-cccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhc
Confidence 889998 899999999999988887 59999999999988877
No 159
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.87 E-value=0.021 Score=38.14 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=27.2
Q ss_pred cccccccCCCCEEEEEEeCCCChhhhhhccHHHH
Q psy6924 35 PLSLNSHLKNKIVIMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 35 ~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~ 68 (89)
.+.. ..-.++++++.|..+.||+|+++.+.+.+
T Consensus 69 ~i~~-g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 69 AIVY-GKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CeEE-cCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 4444 44467999999999999999999988877
No 160
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.74 E-value=0.012 Score=34.60 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=21.6
Q ss_pred EEEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 48 IMDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
|+.|..+|||.|++....|+++..++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~ 27 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER 27 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc
Confidence 56789999999999999998875443
No 161
>KOG0911|consensus
Probab=95.72 E-value=0.0036 Score=43.53 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=30.1
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
+++..+++||+.||.+|.++...+..+++..++
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~ 48 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN 48 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh
Confidence 889999999999999999999999999887743
No 162
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=95.71 E-value=0.015 Score=40.85 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=43.6
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEEeee
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQIN 87 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~~~ 87 (89)
|+...+ .+..|+++||-+-..+|..|...+..|+.|..++...++.=|..+=||
T Consensus 16 ~~~~pm-~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN 69 (238)
T PF04592_consen 16 GGQDPM-LNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVN 69 (238)
T ss_pred CCchHh-hhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEc
Confidence 444455 678999999999999999999999999999988887776555555444
No 163
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.55 E-value=0.011 Score=33.63 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=21.3
Q ss_pred EEEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 48 IMDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
|+.|.++|||.|+.....|+++...|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~ 27 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKP 27 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCc
Confidence 46788999999999999988875533
No 164
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.54 E-value=0.018 Score=40.47 Aligned_cols=56 Identities=9% Similarity=0.017 Sum_probs=43.7
Q ss_pred cccCCCCccccccccCCCc-ccccccC--CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 17 IFHGRDFCTKQEWMNTTEP-LSLNSHL--KNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 17 ~~~ap~~~~~~~~~~~g~~-~~l~~~~--~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
+..||+.+.. + ++ |+. .++ -++ .++|+||+|-+-.||+-+.-...++++.++|++.
T Consensus 76 G~~APns~vv-~-l~-g~~~~~i-ldf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~ 134 (237)
T PF00837_consen 76 GGPAPNSPVV-T-LD-GQRSCRI-LDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV 134 (237)
T ss_pred CCCCCCCceE-e-eC-CCcceeH-HHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh
Confidence 3467877632 2 34 554 666 465 4899999999999999999999999999999984
No 165
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.53 E-value=0.013 Score=32.02 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=17.4
Q ss_pred EEEEeCCCChhhhhhccHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~ 68 (89)
++.|+++||++|++....+++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~ 22 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE 22 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH
Confidence 467899999999998777665
No 166
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.45 E-value=0.014 Score=31.73 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=19.0
Q ss_pred EEEEeCCCChhhhhhccHHHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPILIR 70 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~ 70 (89)
|+.|.++||++|+.....|++..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~ 24 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 45789999999999888877653
No 167
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.43 E-value=0.019 Score=39.80 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=26.9
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHHHHHHH
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRH 71 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~ 71 (89)
..-.|+.+++.|..+.||+|++..+.+.++.+
T Consensus 103 g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~ 134 (232)
T PRK10877 103 KAPQEKHVITVFTDITCGYCHKLHEQMKDYNA 134 (232)
T ss_pred cCCCCCEEEEEEECCCChHHHHHHHHHHHHhc
Confidence 34468999999999999999999988887643
No 168
>KOG0855|consensus
Probab=95.36 E-value=0.024 Score=38.31 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=47.6
Q ss_pred ccccCCCCccccccccCCCcccccccCCCC-EEEEEEeC-CCChhhhhhccHHHHHHHHhCcCCeEEEEEEe
Q psy6924 16 AIFHGRDFCTKQEWMNTTEPLSLNSHLKNK-IVIMDFFT-YCCINCMHILPIPILIRHILEYKRTHIIKTFQ 85 (89)
Q Consensus 16 ~~~~ap~~~~~~~~~~~g~~~~l~~~~~gk-~vvv~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~ 85 (89)
.+-.+|||+...+ .|.+++| ....|+ +||+.||- ..-|.|-++.=-++.-+++++..+-.|++..+
T Consensus 65 ~Gd~iPD~tL~de---dg~sisL-kkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~ 132 (211)
T KOG0855|consen 65 KGDAIPDFTLKDE---DGKSISL-KKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSG 132 (211)
T ss_pred cCCcCCCcccccC---CCCeeee-eeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeecc
Confidence 3446788875443 3889999 787766 77777773 35677888777788888888877777777643
No 169
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.23 E-value=0.03 Score=39.24 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=29.4
Q ss_pred cccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHH
Q psy6924 35 PLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHI 72 (89)
Q Consensus 35 ~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~ 72 (89)
.+.. .+-.++.+|+.|..+.||+|++....+.++.+.
T Consensus 109 ~i~~-g~~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 109 WILD-GKADAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred Cccc-cCCCCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 3444 445788999999999999999999888877543
No 170
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.98 E-value=0.028 Score=30.47 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=17.6
Q ss_pred EEEEeCCCChhhhhhccHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~ 68 (89)
|+.|+.+||++|++....|++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~ 21 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE 21 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHHH
Confidence 467999999999998877754
No 171
>PHA03050 glutaredoxin; Provisional
Probab=94.91 E-value=0.022 Score=35.14 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEeCCCChhhhhhccHHHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPILIR 70 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~ 70 (89)
|+.|..+|||+|++....|++..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~ 37 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFS 37 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcC
Confidence 55799999999999888887753
No 172
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=94.68 E-value=0.085 Score=37.50 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=33.6
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
.++..|||+||-+.++.|..+...|..|+.+|+.-.|+-|..
T Consensus 144 ~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a 185 (265)
T PF02114_consen 144 SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRA 185 (265)
T ss_dssp STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEeh
Confidence 356789999999999999999999999999999877655543
No 173
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.1 Score=35.71 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=34.4
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCC
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKR 77 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~ 77 (89)
+..... .+..++++++.|....||+|++..|.+.+.+...++..
T Consensus 74 ~~~~~~-G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~ 117 (244)
T COG1651 74 GKDVVL-GNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVR 117 (244)
T ss_pred CCcccc-cCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCc
Confidence 334444 56666999999999999999999999999776666553
No 174
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.63 E-value=0.011 Score=39.40 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=21.8
Q ss_pred cccccCC-CcccccccCCCCEEEEEEeCCCChhhhhhc
Q psy6924 27 QEWMNTT-EPLSLNSHLKNKIVIMDFFTYCCINCMHIL 63 (89)
Q Consensus 27 ~~~~~~g-~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~ 63 (89)
..|..-+ +.+.. +..++|+++|.+..+||..|+.|.
T Consensus 20 V~W~~w~~ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~ 56 (163)
T PF03190_consen 20 VNWQPWGEEALEK-AKKENKPIFLSIGYSWCHWCHVME 56 (163)
T ss_dssp S--B-SSHHHHHH-HHHHT--EEEEEE-TT-HHHHHHH
T ss_pred CCcccCCHHHHHH-HHhcCCcEEEEEEecCCcchhhhc
Confidence 4555433 45555 567899999999999999998654
No 175
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.78 E-value=0.067 Score=30.71 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=19.3
Q ss_pred CEEEEEEeCCCChhhhhhccHHHHH
Q psy6924 45 KIVIMDFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 45 k~vvv~Fwa~wC~~C~~~~p~l~~l 69 (89)
+.-|+-|..+||+.|++....|++.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~ 31 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK 31 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc
Confidence 3345579999999999988777643
No 176
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.75 E-value=0.056 Score=32.68 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=17.7
Q ss_pred EEEEeCCCChhhhhhccHHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l 69 (89)
|+.|..+|||+|++....|++.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4468899999999888777665
No 177
>KOG2792|consensus
Probab=93.70 E-value=0.11 Score=37.19 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=35.1
Q ss_pred CCcccccccCCCCEEEEEEeCCCChh-hhhhccHHHHHHHHhCc
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCIN-CMHILPIPILIRHILEY 75 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~-C~~~~p~l~~l~~~~~~ 75 (89)
|+.++- .++.||.++++|-=+.||. |..++..|.++.++..+
T Consensus 129 Gk~~te-~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~ 171 (280)
T KOG2792|consen 129 GKRVTE-KDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEA 171 (280)
T ss_pred CCeecc-cccccceEEEEecccCCCCcChHHHHHHHHHHHHHhc
Confidence 778887 8999999999999999995 88888777777766544
No 178
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.67 E-value=0.052 Score=30.85 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=17.8
Q ss_pred EEEEeCCCChhhhhhccHHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l 69 (89)
|.-|+.+||+.|.+....|++.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~ 22 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK 22 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc
Confidence 3568899999999988877654
No 179
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.11 E-value=0.096 Score=29.20 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=17.3
Q ss_pred EEEEeCCCChhhhhhccHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~ 68 (89)
+..|+.++|+.|.+....|++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~ 22 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK 22 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 457899999999998877765
No 180
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=92.95 E-value=0.2 Score=28.58 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=24.4
Q ss_pred EEeCCCChhhhhhccHHHHHHHHhCcCCeEEEE
Q psy6924 50 DFFTYCCINCMHILPIPILIRHILEYKRTHIIK 82 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~ 82 (89)
.+++++|+.|......++++.++++ -...++.
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~ 35 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIID 35 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEE
Confidence 3468889999999999999998884 3444443
No 181
>KOG0852|consensus
Probab=92.89 E-value=0.21 Score=33.95 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=47.6
Q ss_pred cCCCCccccccccCC--CcccccccCCCCEEEEEEe-CCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 19 HGRDFCTKQEWMNTT--EPLSLNSHLKNKIVIMDFF-TYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 19 ~ap~~~~~~~~~~~g--~~~~l~~~~~gk~vvv~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
++|++.+ ...++ | +.++| ++++||.|++-|+ ..+---|..+.-.+.+.+++|++.+-.||++.
T Consensus 9 p~p~fk~-~aVVd-G~f~e~~L-~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S 74 (196)
T KOG0852|consen 9 PAPDFKG-TAVVD-GEFKEIKL-SDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGIS 74 (196)
T ss_pred CCCCcce-eEEEc-CcceEEee-hhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEe
Confidence 4577774 33344 4 46888 7999999999998 44555677888888888999999888888764
No 182
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.54 E-value=0.13 Score=28.91 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=17.0
Q ss_pred EEEEeCCCChhhhhhccHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~ 68 (89)
++-|..+||+.|++....|++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~ 23 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE 23 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH
Confidence 346888999999998877765
No 183
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.31 E-value=0.15 Score=28.46 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=18.0
Q ss_pred EEEEeCCCChhhhhhccHHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l 69 (89)
++.|..+||+.|.+....|++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~ 24 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4578999999999988777753
No 184
>KOG0913|consensus
Probab=91.11 E-value=0.041 Score=38.72 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=25.1
Q ss_pred EEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 46 IVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 46 ~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
--++.|+|+|||.|..-.|.++.++.--.|-
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL 71 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDL 71 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCC
Confidence 3567999999999999999999887654443
No 185
>PRK10329 glutaredoxin-like protein; Provisional
Probab=91.08 E-value=0.23 Score=28.89 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.0
Q ss_pred EEEEeCCCChhhhhhccHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~ 68 (89)
+..|..+||++|++....|.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~ 23 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES 23 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH
Confidence 457889999999987777754
No 186
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=90.94 E-value=0.87 Score=29.40 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=32.5
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
.+|+|+|-|--.|-+.|.++...|.+.+++.++ +.+|-+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~ 57 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYL 57 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEE
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEE
Confidence 689999999999999999999999999998765 444433
No 187
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=90.75 E-value=0.2 Score=28.04 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=16.8
Q ss_pred EEEeCCCChhhhhhccHHHH
Q psy6924 49 MDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 49 v~Fwa~wC~~C~~~~p~l~~ 68 (89)
..|..++|+.|++....|++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~ 21 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE 21 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46788999999998888775
No 188
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=90.00 E-value=0.41 Score=33.94 Aligned_cols=35 Identities=9% Similarity=-0.150 Sum_probs=29.3
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
..||+.++..-+.|||.|..++-.|-..-.+|..-
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 37999999999999999998887777666777653
No 189
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.00 E-value=0.27 Score=29.54 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=18.8
Q ss_pred CCCEEEEEEeC----CCChhhhhhccHHHHH
Q psy6924 43 KNKIVIMDFFT----YCCINCMHILPIPILI 69 (89)
Q Consensus 43 ~gk~vvv~Fwa----~wC~~C~~~~p~l~~l 69 (89)
..+.|+|.-.+ +|||+|.+....|++.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKAC 40 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHc
Confidence 44556655443 8999999887777664
No 190
>PHA03075 glutaredoxin-like protein; Provisional
Probab=89.69 E-value=0.47 Score=30.10 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=33.3
Q ss_pred CEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEE
Q psy6924 45 KIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTF 84 (89)
Q Consensus 45 k~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~ 84 (89)
|.++|-|--+-|+-|......+.++..+|.=.++.++..|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSfF 41 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSFF 41 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeeee
Confidence 5688999999999999999999999999876666655544
No 191
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.29 E-value=0.34 Score=28.52 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=18.6
Q ss_pred CCCCEEEEEEeC----CCChhhhhhccHHHHH
Q psy6924 42 LKNKIVIMDFFT----YCCINCMHILPIPILI 69 (89)
Q Consensus 42 ~~gk~vvv~Fwa----~wC~~C~~~~p~l~~l 69 (89)
.++++|+|.--+ +||++|++....|++.
T Consensus 5 i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 5 IKENPVVLFMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred hccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence 355566654332 6999999977776654
No 192
>PRK10638 glutaredoxin 3; Provisional
Probab=88.76 E-value=0.46 Score=27.30 Aligned_cols=22 Identities=9% Similarity=0.079 Sum_probs=17.4
Q ss_pred EEEEeCCCChhhhhhccHHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l 69 (89)
+.-|..+||++|++....|++.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~ 25 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK 25 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 4467789999999888777654
No 193
>KOG3414|consensus
Probab=88.56 E-value=1.4 Score=28.46 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=33.6
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
-..|+|||-|--.|-|.|.++...|.+++++..+ +++|-.
T Consensus 21 t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~Iyl 60 (142)
T KOG3414|consen 21 TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYL 60 (142)
T ss_pred ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEE
Confidence 3678999999999999999999999999998765 444433
No 194
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=88.40 E-value=0.86 Score=35.18 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=31.0
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEE
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIK 82 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~ 82 (89)
+.+...+-.|.+++|+.|.+....+++++.+.++-...++.
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~ 514 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMID 514 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEE
Confidence 34555566678999999999999999999988754455544
No 195
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=86.93 E-value=0.64 Score=26.95 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=17.5
Q ss_pred EEEEeCCCChhhhhhccHHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l 69 (89)
+..|.-++||+|.+....|.+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~ 24 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK 24 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc
Confidence 4568889999999988777743
No 196
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.95 E-value=1.4 Score=33.57 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=32.2
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
.+.+.+-+..|.++.||+|......+++++.+.+.-...+|
T Consensus 113 ~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i 153 (517)
T PRK15317 113 ALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMI 153 (517)
T ss_pred hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEE
Confidence 34566678999999999999999999999988774434443
No 197
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=85.21 E-value=2.2 Score=27.71 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=24.6
Q ss_pred EEEEeCCCChhhhhhccHHHHHHHHhC
Q psy6924 48 IMDFFTYCCINCMHILPIPILIRHILE 74 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~~~~~ 74 (89)
|..|+.+.||.|-...+.++++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 568899999999999999999999984
No 198
>PRK10824 glutaredoxin-4; Provisional
Probab=85.04 E-value=0.78 Score=28.75 Aligned_cols=28 Identities=4% Similarity=-0.001 Sum_probs=19.6
Q ss_pred CCCCEEEEEEeC----CCChhhhhhccHHHHH
Q psy6924 42 LKNKIVIMDFFT----YCCINCMHILPIPILI 69 (89)
Q Consensus 42 ~~gk~vvv~Fwa----~wC~~C~~~~p~l~~l 69 (89)
...+.|||.--+ +|||+|++....|.++
T Consensus 12 I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 12 IAENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred HhcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 345556654443 5999999988887775
No 199
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.61 E-value=3.3 Score=27.46 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=43.9
Q ss_pred ccccccCCCCccccccccCCCcccccccCCCCEEEEEEe-CCCChhhhhhccHHHHHHHHhCcCC
Q psy6924 14 LVAIFHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFF-TYCCINCMHILPIPILIRHILEYKR 77 (89)
Q Consensus 14 ~~~~~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~ 77 (89)
+..+-.+|+|..... .-+.+++ ++.+||..+|..+ +-.-+-|..+...+++.+.++.+..
T Consensus 18 ~~vGd~ap~ftl~~~---dL~~v~l-~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~ 78 (158)
T COG2077 18 PQVGDKAPDFTLVGK---DLNDVSL-ADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTV 78 (158)
T ss_pred CccCCcCCceEEEcC---cccceec-cccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcE
Confidence 444568898874432 2357888 7889997666655 5588899999999999988887743
No 200
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=84.43 E-value=0.84 Score=28.38 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=23.8
Q ss_pred ccCCCCEEEEEEeCC----CChhhhhhc--cHHHHHH
Q psy6924 40 SHLKNKIVIMDFFTY----CCINCMHIL--PIPILIR 70 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~----wC~~C~~~~--p~l~~l~ 70 (89)
+.-++|.++|+++++ ||..|+... |.+.++-
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l 49 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI 49 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH
Confidence 456899999999999 999998765 4444443
No 201
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=84.39 E-value=2.8 Score=27.12 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=26.0
Q ss_pred EEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 47 VIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 47 vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.|..|+..-||.|-...+.++++.+++++
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~ 29 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD 29 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999954
No 202
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=83.03 E-value=1.1 Score=33.68 Aligned_cols=22 Identities=9% Similarity=-0.108 Sum_probs=17.9
Q ss_pred EEEEeCCCChhhhhhccHHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l 69 (89)
|+.|..+|||+|++....|++.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~ 25 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN 25 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5679999999999877766653
No 203
>KOG1752|consensus
Probab=82.77 E-value=1.2 Score=27.51 Aligned_cols=25 Identities=16% Similarity=0.188 Sum_probs=18.0
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHH
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~ 68 (89)
..++|| .|.-+||+.|.+....+.+
T Consensus 12 ~~~~VV-ifSKs~C~~c~~~k~ll~~ 36 (104)
T KOG1752|consen 12 SENPVV-IFSKSSCPYCHRAKELLSD 36 (104)
T ss_pred hcCCEE-EEECCcCchHHHHHHHHHh
Confidence 444554 6899999999986655555
No 204
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=81.09 E-value=1.3 Score=26.55 Aligned_cols=21 Identities=10% Similarity=-0.124 Sum_probs=16.9
Q ss_pred EEEeCCCChhhhhhccHHHHH
Q psy6924 49 MDFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 49 v~Fwa~wC~~C~~~~p~l~~l 69 (89)
.-|..++|+.|++....|++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH 22 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 458889999999988777663
No 205
>KOG3170|consensus
Probab=80.34 E-value=3.6 Score=28.74 Aligned_cols=40 Identities=5% Similarity=-0.043 Sum_probs=35.5
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEE
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHI 80 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~v 80 (89)
..+|-.|||+.|...-+.|+-....|++++-+|++-.|+-
T Consensus 108 As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVk 147 (240)
T KOG3170|consen 108 ASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVK 147 (240)
T ss_pred ccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEe
Confidence 3478999999999999999999999999999999866543
No 206
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=80.32 E-value=4.1 Score=26.89 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=22.4
Q ss_pred EEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 50 DFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
.|..|.|+.|-...|.+.++.++|+.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 589999999999999999999999875
No 207
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=79.03 E-value=1.7 Score=26.51 Aligned_cols=20 Identities=5% Similarity=-0.220 Sum_probs=16.6
Q ss_pred EEEeCCCChhhhhhccHHHH
Q psy6924 49 MDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 49 v~Fwa~wC~~C~~~~p~l~~ 68 (89)
.-|+.++|+.|++....|++
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46889999999998877765
No 208
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=78.76 E-value=4 Score=31.23 Aligned_cols=40 Identities=10% Similarity=0.242 Sum_probs=31.7
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEE
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHI 80 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~v 80 (89)
.+.+.+-+-.|.++.||+|......+++++.++++-...+
T Consensus 114 ~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~ 153 (515)
T TIGR03140 114 RLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTM 153 (515)
T ss_pred hcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEE
Confidence 4456777999999999999999899999988877433333
No 209
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=75.51 E-value=2.4 Score=25.87 Aligned_cols=20 Identities=10% Similarity=-0.099 Sum_probs=16.4
Q ss_pred EEEeCCCChhhhhhccHHHH
Q psy6924 49 MDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 49 v~Fwa~wC~~C~~~~p~l~~ 68 (89)
.-|..++|+.|++....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 35788999999998877766
No 210
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=74.15 E-value=3.4 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=16.6
Q ss_pred EEEEeCCCChhhhhhccHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~ 68 (89)
+.-|..++|+.|++....|++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 346788999999998766665
No 211
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=71.38 E-value=4.4 Score=21.17 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=16.2
Q ss_pred CChhhhhhccHHHHHHHHhCc
Q psy6924 55 CCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 55 wC~~C~~~~p~l~~l~~~~~~ 75 (89)
+|.||+.-.+.+.++.++...
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~~ 38 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIVR 38 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHTB
T ss_pred CCCCcHhHHHHHHHHHHHHHc
Confidence 799999999999999877643
No 212
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=70.86 E-value=3.5 Score=25.27 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=16.1
Q ss_pred EEeCCCChhhhhhccHHHH
Q psy6924 50 DFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~ 68 (89)
-|+.++|+.|++....|++
T Consensus 3 iY~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA 21 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 5788999999998877766
No 213
>KOG1672|consensus
Probab=70.35 E-value=9.5 Score=26.40 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=34.9
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEE
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIK 82 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~ 82 (89)
+..-||++||-+.-..|+-+...|+.|++++-+.+|+-|.
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvn 122 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVN 122 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEe
Confidence 5677999999999999999999999999999887776543
No 214
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=67.70 E-value=12 Score=23.19 Aligned_cols=42 Identities=12% Similarity=-0.112 Sum_probs=28.3
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc-CCeEEEE
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIPILIRHILEY-KRTHIIK 82 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~~~vi~ 82 (89)
+...++++|-=.++.|+-+++....+++..+..++ -.+.++.
T Consensus 16 ~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~ 58 (105)
T PF11009_consen 16 ESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLD 58 (105)
T ss_dssp H---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEE
T ss_pred hcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEE
Confidence 45688999999999999999999999999888776 3344443
No 215
>PRK12559 transcriptional regulator Spx; Provisional
Probab=67.35 E-value=6 Score=25.06 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=16.8
Q ss_pred EEEEeCCCChhhhhhccHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~ 68 (89)
+.-|..++|+.|+.....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456888999999998766665
No 216
>PTZ00062 glutaredoxin; Provisional
Probab=66.29 E-value=5.7 Score=27.20 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=18.6
Q ss_pred CCCEEEEEEe----CCCChhhhhhccHHHHH
Q psy6924 43 KNKIVIMDFF----TYCCINCMHILPIPILI 69 (89)
Q Consensus 43 ~gk~vvv~Fw----a~wC~~C~~~~p~l~~l 69 (89)
..++|+|.-- .++|+.|++....|++.
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~ 141 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS 141 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHc
Confidence 4556665444 37999999887777764
No 217
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=65.63 E-value=6.9 Score=23.90 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=16.1
Q ss_pred EEEeCCCChhhhhhccHHHH
Q psy6924 49 MDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 49 v~Fwa~wC~~C~~~~p~l~~ 68 (89)
.-|+.++|+.|++....|++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~ 22 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE 22 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 35778999999998777766
No 218
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=63.03 E-value=15 Score=25.52 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=31.6
Q ss_pred CCccccccc-CCCC--EEEEEEe-----CCCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 33 TEPLSLNSH-LKNK--IVIMDFF-----TYCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 33 g~~~~l~~~-~~gk--~vvv~Fw-----a~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
..+++| .+ +.|+ .+|-+|. ..-|+.|-.....++....+...++..++
T Consensus 55 ~G~v~L-~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa 110 (211)
T PF05988_consen 55 DGPVSL-ADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFA 110 (211)
T ss_pred CCcccH-HHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEE
Confidence 456888 55 4554 5666665 67899999888888555555555544333
No 219
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.57 E-value=1.6 Score=25.80 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=19.8
Q ss_pred EEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 49 MDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 49 v~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
+.|++.-||.|.....+++++.-.|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y 29 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY 29 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc
Confidence 4699999999998888887775444
No 220
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=62.00 E-value=44 Score=22.24 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=36.7
Q ss_pred cccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHH-hCcCCeEEEEEE
Q psy6924 35 PLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHI-LEYKRTHIIKTF 84 (89)
Q Consensus 35 ~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~-~~~~~~~vi~~~ 84 (89)
+.+. +++.||+-+|..-|-.-..=....|.++.+.++ ++........++
T Consensus 29 ~W~s-~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIi 78 (160)
T PF09695_consen 29 PWNS-AQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTII 78 (160)
T ss_pred ccCc-cccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEE
Confidence 5565 678999999888887776666777888888766 777666655544
No 221
>KOG0541|consensus
Probab=60.60 E-value=22 Score=23.81 Aligned_cols=52 Identities=23% Similarity=0.156 Sum_probs=34.4
Q ss_pred cccccccCCCCEEEEEEeCC--CChh-hhhhccHHHHHHHHhCcCCeEEEEEEeee
Q psy6924 35 PLSLNSHLKNKIVIMDFFTY--CCIN-CMHILPIPILIRHILEYKRTHIIKTFQIN 87 (89)
Q Consensus 35 ~~~l~~~~~gk~vvv~Fwa~--wC~~-C~~~~p~l~~l~~~~~~~~~~vi~~~~~~ 87 (89)
.+++++-.+||-++| |-.+ .-|. |+...|-+.+-+++++.+++..|-.+-+|
T Consensus 34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn 88 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN 88 (171)
T ss_pred eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC
Confidence 666634468855543 4332 3444 56788888888899999888777666554
No 222
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=58.98 E-value=9.2 Score=20.82 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=14.3
Q ss_pred EEeCCCChhhhhhccHHHH
Q psy6924 50 DFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~ 68 (89)
-|+..+|+.|++..-.+++
T Consensus 3 ly~~~~~p~~~rv~~~L~~ 21 (71)
T cd03060 3 LYSFRRCPYAMRARMALLL 21 (71)
T ss_pred EEecCCCcHHHHHHHHHHH
Confidence 4678899999887666554
No 223
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=57.55 E-value=27 Score=25.50 Aligned_cols=44 Identities=9% Similarity=-0.131 Sum_probs=35.9
Q ss_pred CCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEEe
Q psy6924 42 LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQ 85 (89)
Q Consensus 42 ~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~ 85 (89)
..||||++-|=..-=+..++++..+++.+++..-.++.+++...
T Consensus 156 VdGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 156 VDGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred ECCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 37999998887777777888889999999888878888887653
No 224
>KOG4498|consensus
Probab=56.32 E-value=16 Score=25.06 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=38.3
Q ss_pred CCCcccccccC-C-CCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEEe
Q psy6924 32 TTEPLSLNSHL-K-NKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQ 85 (89)
Q Consensus 32 ~g~~~~l~~~~-~-gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~ 85 (89)
.|+.+.. .++ + .+.||.-.-=+.|--|+++...|.++..-.+..++..|.+-|
T Consensus 38 rg~~vp~-~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~ 92 (197)
T KOG4498|consen 38 RGESVPV-TSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGP 92 (197)
T ss_pred cCceeeh-HHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 3677777 443 4 445555556679999999999999997667777777776653
No 225
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=54.98 E-value=13 Score=23.51 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=15.4
Q ss_pred EEEeCCCChhhhhhccHHHH
Q psy6924 49 MDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 49 v~Fwa~wC~~C~~~~p~l~~ 68 (89)
.-|..++|+.|+.....|++
T Consensus 3 ~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 35678999999997766654
No 226
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=54.59 E-value=4.7 Score=27.64 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=15.0
Q ss_pred CCCEEEEEEeCCCChhhh
Q psy6924 43 KNKIVIMDFFTYCCINCM 60 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~ 60 (89)
+++.++=.||..||..|.
T Consensus 4 k~~~~~gk~~iyWCe~cN 21 (202)
T COG5270 4 KMPVVLGKFPIYWCEKCN 21 (202)
T ss_pred ccceeecccceeehhhCC
Confidence 366778899999999994
No 227
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=53.21 E-value=5.2 Score=26.03 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=12.4
Q ss_pred CChhhhhhccHHHHH
Q psy6924 55 CCINCMHILPIPILI 69 (89)
Q Consensus 55 wC~~C~~~~p~l~~l 69 (89)
+|++|.+....|+.+
T Consensus 15 t~~~C~~ak~iL~~~ 29 (147)
T cd03031 15 TFEDCNNVRAILESF 29 (147)
T ss_pred cChhHHHHHHHHHHC
Confidence 899999888777665
No 228
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=50.35 E-value=20 Score=19.66 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=14.8
Q ss_pred EEeCCCChhhhhhccHHHHH
Q psy6924 50 DFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~l 69 (89)
-|..+.|+.|++.+-.+.+.
T Consensus 4 Ly~~~~~p~c~kv~~~L~~~ 23 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLDYH 23 (77)
T ss_pred EEEcCCCHHHHHHHHHHHHC
Confidence 46668899999887666554
No 229
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=48.62 E-value=39 Score=21.91 Aligned_cols=26 Identities=12% Similarity=-0.161 Sum_probs=22.4
Q ss_pred EEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 50 DFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.|+..-||.|--..+.|+++.++++.
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~~ 28 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELGD 28 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCCC
Confidence 46677899999999999999999964
No 230
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=48.19 E-value=14 Score=19.69 Aligned_cols=20 Identities=5% Similarity=-0.275 Sum_probs=15.1
Q ss_pred EEeCCCChhhhhhccHHHHH
Q psy6924 50 DFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~l 69 (89)
-|+.++|+.|++..-.+.+.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc
Confidence 46667899999887776654
No 231
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=47.46 E-value=21 Score=25.64 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=29.1
Q ss_pred CChhhhhhccHHHHHHHHhCcCCeEEEEEEeee
Q psy6924 55 CCINCMHILPIPILIRHILEYKRTHIIKTFQIN 87 (89)
Q Consensus 55 wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~~~ 87 (89)
|--||+.....+-.+++++..+.+.+++.-|++
T Consensus 132 ~anPCKHi~AvyY~lae~f~~dPflif~lRG~~ 164 (266)
T COG4279 132 YANPCKHIAAVYYLLAEKFDEDPFLIFKLRGRN 164 (266)
T ss_pred cccchHHHHHHHHHHHHHhccCCeeeeeecCCC
Confidence 445899999999999999999999999887765
No 232
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.43 E-value=24 Score=23.76 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=25.4
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHH---HHHHHHhC
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIP---ILIRHILE 74 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l---~~l~~~~~ 74 (89)
....+|..++.|-+..|+.|.++...+ .++++-+.
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk 75 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK 75 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh
Confidence 345899999999999999998765443 34444443
No 233
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=46.07 E-value=24 Score=21.75 Aligned_cols=20 Identities=10% Similarity=-0.003 Sum_probs=15.9
Q ss_pred EEEeCCCChhhhhhccHHHH
Q psy6924 49 MDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 49 v~Fwa~wC~~C~~~~p~l~~ 68 (89)
.-|..+.|..|+.....|++
T Consensus 3 ~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 3 IFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 45788999999988766665
No 234
>KOG0854|consensus
Probab=45.77 E-value=57 Score=22.49 Aligned_cols=63 Identities=10% Similarity=-0.034 Sum_probs=46.4
Q ss_pred ccccCCCCccccccccCCCcccccccCCCCEEEEEEe--CCCChhhhhhccHHHHHHHHhCcCCeEEEEE
Q psy6924 16 AIFHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFF--TYCCINCMHILPIPILIRHILEYKRTHIIKT 83 (89)
Q Consensus 16 ~~~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fw--a~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~ 83 (89)
.+-.+|.|+... +-..+.+ -+..|.-..|.|. |..-|-|-.+...+.+++-+|..+++..|+.
T Consensus 8 lgd~~PNfea~T----t~g~i~f-hd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlial 72 (224)
T KOG0854|consen 8 LGDTVPNFEADT----TVGKIKF-HDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIAL 72 (224)
T ss_pred ccCcCCCccccc----cccceeh-hhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEe
Confidence 345688887432 2457888 5766665555665 4577899999999999999999999888764
No 235
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=44.02 E-value=19 Score=20.51 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=19.9
Q ss_pred EEEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 48 IMDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
|+.|..+.|.-|......|+++..+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~ 27 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF 27 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc
Confidence 56788999999999988888765433
No 236
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=43.94 E-value=1e+02 Score=21.80 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=33.5
Q ss_pred ccCCCCccccccccCCCcccccccCCCCEEEEEEeCC-CChhhhhhccHHHHHHHHhCcCCeEEEEEEeeec
Q psy6924 18 FHGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTY-CCINCMHILPIPILIRHILEYKRTHIIKTFQINF 88 (89)
Q Consensus 18 ~~ap~~~~~~~~~~~g~~~~l~~~~~gk~vvv~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~~~~ 88 (89)
.-.|++.+.. ++ |+.+++...++||+.||..+.+ |-..|.. -+.....++|....-..+..+.||+
T Consensus 99 lyFP~l~g~t--L~-g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~--sw~~p~~~~~~~~~~~~~q~v~In~ 165 (252)
T PF05176_consen 99 LYFPNLQGKT--LA-GNKVDTTDLLRGKVSLVCLFSSAWGEEMVD--SWTSPFLEDFLQEPYGRVQIVEINL 165 (252)
T ss_pred CcCCCCcccc--CC-CCCcccccccCCceEEEEEeehHHHHHHHH--HHhhHHHHHHhhCCCCceEEEEEec
Confidence 3456666322 33 6677764567999866665554 4444332 1222333444433322445556665
No 237
>KOG2640|consensus
Probab=43.86 E-value=6.7 Score=28.83 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=25.0
Q ss_pred CEEEEEEeCCCChhhhhhccHHHHHHHHhC
Q psy6924 45 KIVIMDFFTYCCINCMHILPIPILIRHILE 74 (89)
Q Consensus 45 k~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~ 74 (89)
-.|-+.|+++|||..+...|.++-....|+
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~ 106 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRSSLFS 106 (319)
T ss_pred CcccccchhcccCcccccCcccchhhhhcc
Confidence 467889999999999999888877766665
No 238
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=43.74 E-value=62 Score=22.14 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=22.2
Q ss_pred EEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEEeee
Q psy6924 50 DFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQIN 87 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~~~ 87 (89)
.|.+-.|..|.-....|.++.++ .+++.+ .+.||
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~---~~Vi~L-afHVD 37 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR---PDVIAL-AFHVD 37 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH---TSSEEE-EEE-S
T ss_pred EecCCCCCCCcHHHHHHHHhhcC---CCEEEE-EecCC
Confidence 47777999999999999999888 245444 44444
No 239
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=43.28 E-value=31 Score=26.74 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=27.3
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHHHHHHH
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRH 71 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~ 71 (89)
+++++.++++.|+.+.|..|......++++++
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~ 393 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS 393 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh
Confidence 35677888999999999999999999999875
No 240
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=43.10 E-value=49 Score=18.74 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=23.5
Q ss_pred CCCEEEEEEeCCCChhhhhhccHHHHHHHHhCc
Q psy6924 43 KNKIVIMDFFTYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 43 ~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
..+++||-|+.+++. .....+.++++.+++
T Consensus 16 ~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~ 45 (97)
T cd02981 16 KDDVVVVGFFKDEES---EEYKTFEKVAESLRD 45 (97)
T ss_pred cCCeEEEEEECCCCc---HHHHHHHHHHHhccc
Confidence 577889999999987 456677888887765
No 241
>PRK12359 flavodoxin FldB; Provisional
Probab=43.04 E-value=68 Score=21.24 Aligned_cols=45 Identities=16% Similarity=0.023 Sum_probs=28.6
Q ss_pred cCCCCEEEEEEe-CCCChhhhhhccHHHHHHHHhCcCCeEEEEEEee
Q psy6924 41 HLKNKIVIMDFF-TYCCINCMHILPIPILIRHILEYKRTHIIKTFQI 86 (89)
Q Consensus 41 ~~~gk~vvv~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~~ 86 (89)
+++||.+. -|- ..+-+....+.-.+..++++...++-.+++..+.
T Consensus 76 dl~gK~vA-lFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~ 121 (172)
T PRK12359 76 NLEGKIVA-LYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPT 121 (172)
T ss_pred CCCCCEEE-EEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeC
Confidence 57888877 343 2332333445556677788777778888887765
No 242
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.35 E-value=15 Score=29.60 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=22.4
Q ss_pred cccccccCCCCEEEEEEeCCCChhhhhhc
Q psy6924 35 PLSLNSHLKNKIVIMDFFTYCCINCMHIL 63 (89)
Q Consensus 35 ~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~ 63 (89)
.+.. +.-++||++|..-.+||-.|..|.
T Consensus 35 Af~~-A~~edkPIflSIGys~CHWChVM~ 62 (667)
T COG1331 35 AFAK-AKEEDKPILLSIGYSTCHWCHVMA 62 (667)
T ss_pred HHHH-HHHhCCCEEEEeccccccchHHHh
Confidence 3444 456899999999999999998653
No 243
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=42.16 E-value=18 Score=18.42 Aligned_cols=20 Identities=0% Similarity=-0.195 Sum_probs=14.6
Q ss_pred EEeCCCChhhhhhccHHHHH
Q psy6924 50 DFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~l 69 (89)
-|..++|+.|++....++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~ 22 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK 22 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc
Confidence 35667899999877766654
No 244
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.03 E-value=12 Score=24.67 Aligned_cols=17 Identities=41% Similarity=0.712 Sum_probs=13.0
Q ss_pred CccccCCCCcccccccc
Q psy6924 2 NYTGHCSFVPVPLVAIF 18 (89)
Q Consensus 2 ~~~~~~~~~~~p~~~~~ 18 (89)
-|.|+|+++|-|....+
T Consensus 97 Py~GACiHvPpPPpNQI 113 (166)
T COG3495 97 PYTGACIHVPPPPPNQI 113 (166)
T ss_pred cccCceeecCCcCCCeE
Confidence 49999999987765443
No 245
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=39.76 E-value=21 Score=19.21 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=13.5
Q ss_pred EeCCCChhhhhhccHHHHH
Q psy6924 51 FFTYCCINCMHILPIPILI 69 (89)
Q Consensus 51 Fwa~wC~~C~~~~p~l~~l 69 (89)
++.++|+.|++..-.+...
T Consensus 4 y~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 4 YIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred EecCCCcHhHHHHHHHHHc
Confidence 5578899998766555543
No 246
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=39.32 E-value=27 Score=18.69 Aligned_cols=20 Identities=0% Similarity=-0.293 Sum_probs=14.7
Q ss_pred EEeCCCChhhhhhccHHHHH
Q psy6924 50 DFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~l 69 (89)
-|..+.|+.|++..-.+++.
T Consensus 3 ly~~~~~~~~~~v~~~l~~~ 22 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAEK 22 (73)
T ss_pred EEECCCChhHHHHHHHHHHc
Confidence 46678899999877666543
No 247
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=39.09 E-value=22 Score=25.51 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=14.2
Q ss_pred eCCCChhhhhhccHHHHHHHHh
Q psy6924 52 FTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 52 wa~wC~~C~~~~p~l~~l~~~~ 73 (89)
.-.||+.|-... .++.+.+..
T Consensus 16 ~~~~CpGCg~~~-il~~l~~al 36 (286)
T PRK11867 16 EPRWCPGCGDGS-ILAALQRAL 36 (286)
T ss_pred CCCcCCCCCCHH-HHHHHHHHH
Confidence 335999996555 666666665
No 248
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=38.90 E-value=27 Score=19.35 Aligned_cols=20 Identities=5% Similarity=-0.110 Sum_probs=14.2
Q ss_pred EEeCCCChhhhhhccHHHHH
Q psy6924 50 DFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~l 69 (89)
-+..++|+.|++..-.+.+.
T Consensus 4 Ly~~~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTEL 23 (77)
T ss_pred EecCCCCchHHHHHHHHHHc
Confidence 45567999999877666554
No 249
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=38.88 E-value=13 Score=24.47 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=11.3
Q ss_pred CChhhhhhccHHH
Q psy6924 55 CCINCMHILPIPI 67 (89)
Q Consensus 55 wC~~C~~~~p~l~ 67 (89)
.||.|++.+|.|.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 6999999999864
No 250
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=38.85 E-value=13 Score=24.44 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=11.3
Q ss_pred CChhhhhhccHHH
Q psy6924 55 CCINCMHILPIPI 67 (89)
Q Consensus 55 wC~~C~~~~p~l~ 67 (89)
.||.|++..|.|.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 6999999999874
No 251
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=38.53 E-value=51 Score=19.63 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=24.8
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHh
Q psy6924 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRHIL 73 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~ 73 (89)
+.+++.+.++.|.... ..|......++++++--
T Consensus 15 ~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS 47 (94)
T cd02974 15 ERLENPVELVASLDDS-EKSAELLELLEEIASLS 47 (94)
T ss_pred HhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC
Confidence 3567777777777766 89988888888887643
No 252
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=37.02 E-value=23 Score=21.08 Aligned_cols=19 Identities=16% Similarity=0.196 Sum_probs=16.0
Q ss_pred EeCCCChhhhhhccHHHHH
Q psy6924 51 FFTYCCINCMHILPIPILI 69 (89)
Q Consensus 51 Fwa~wC~~C~~~~p~l~~l 69 (89)
||..+|+-|....-.+.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~ 20 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR 20 (114)
T ss_pred EECCCCHhHHHHHHHHHhc
Confidence 6888999999988777765
No 253
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.58 E-value=35 Score=26.09 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=20.7
Q ss_pred EeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEEeeec
Q psy6924 51 FFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQINF 88 (89)
Q Consensus 51 Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~~~~ 88 (89)
|....|++||... +..-+.+..++.|+.=|.++.+|+
T Consensus 76 lmt~TgGpCRfgn-Yi~~~rkaLk~aG~~~V~visLn~ 112 (420)
T COG3581 76 LMTQTGGPCRFGN-YIELLRKALKDAGFRDVPVISLNS 112 (420)
T ss_pred EEecCCCCcchhh-HHHHHHHHHHHcCCCCCcEEEeec
Confidence 3444999998554 333333444555555555556654
No 254
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=35.20 E-value=27 Score=22.72 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=19.7
Q ss_pred CCChhhhhhccHHHHHHHHhCcCCeEEE
Q psy6924 54 YCCINCMHILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 54 ~wC~~C~~~~p~l~~l~~~~~~~~~~vi 81 (89)
++|+.|- ..+.++.+.+..+++.+++.
T Consensus 5 ~~c~gc~-~~~~~~~l~~~l~~~~iv~~ 31 (178)
T cd02008 5 GLCPGCP-HRPSFYALRKAFKKDSIVSG 31 (178)
T ss_pred CcCCCCC-ChHHHHHHHHHhcCCeEEec
Confidence 5788884 56788999888887654443
No 255
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=34.47 E-value=47 Score=21.27 Aligned_cols=25 Identities=4% Similarity=-0.111 Sum_probs=21.5
Q ss_pred EEeCCCChhhhhhccHHHHHHHHhC
Q psy6924 50 DFFTYCCINCMHILPIPILIRHILE 74 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~l~~~~~ 74 (89)
.|+..-||.|--..+.|+++.++++
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 4667799999999999999988884
No 256
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=33.78 E-value=75 Score=20.89 Aligned_cols=33 Identities=6% Similarity=0.033 Sum_probs=21.4
Q ss_pred EEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEEe
Q psy6924 46 IVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQ 85 (89)
Q Consensus 46 ~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~ 85 (89)
.-++.+.++.|+=|.. |.+..+.+++.|=.+..
T Consensus 26 ~~~~vyksPnCGCC~~-------w~~~mk~~Gf~Vk~~~~ 58 (149)
T COG3019 26 TEMVVYKSPNCGCCDE-------WAQHMKANGFEVKVVET 58 (149)
T ss_pred eeEEEEeCCCCccHHH-------HHHHHHhCCcEEEEeec
Confidence 4567899999999954 44444555665544433
No 257
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=33.45 E-value=48 Score=20.25 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=18.3
Q ss_pred EeCCC-Chh--hhhhccHHHHH---HHHhCcCCeEEEEEEeee
Q psy6924 51 FFTYC-CIN--CMHILPIPILI---RHILEYKRTHIIKTFQIN 87 (89)
Q Consensus 51 Fwa~w-C~~--C~~~~p~l~~l---~~~~~~~~~~vi~~~~~~ 87 (89)
.|.+| +|. |......|.++ .++|++.= |..+++|
T Consensus 45 yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~Y---VRliG~D 84 (99)
T cd03527 45 YWTMWKLPMFGCTDPAQVLREIEACRKAYPDHY---VRVVGFD 84 (99)
T ss_pred EEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCe---EEEEEEe
Confidence 67765 444 55555555554 56666644 4444554
No 258
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=33.20 E-value=47 Score=20.67 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=16.8
Q ss_pred EEEEeCCCChhhhhhccHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~ 68 (89)
+--|+.+.|..|+....+|++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 445788999999998877765
No 259
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=32.42 E-value=15 Score=20.65 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=22.8
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHH
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIP 66 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l 66 (89)
|..+.+ .+.++..|.|.|.+. |..|....-.+
T Consensus 16 GGdv~l-v~v~~~~V~V~l~Ga-C~gC~~s~~Tl 47 (68)
T PF01106_consen 16 GGDVEL-VDVDDGVVYVRLTGA-CSGCPSSDMTL 47 (68)
T ss_dssp TEEEEE-EEEETTEEEEEEESS-CCSSCCHHHHH
T ss_pred CCcEEE-EEecCCEEEEEEEeC-CCCCCCHHHHH
Confidence 777787 678888888888665 55776555555
No 260
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=32.13 E-value=11 Score=16.30 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=16.0
Q ss_pred CChhhhhhccHHHHHHHHhCc
Q psy6924 55 CCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 55 wC~~C~~~~p~l~~l~~~~~~ 75 (89)
+|..|.........+...+++
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHCc
Confidence 588888888887887777664
No 261
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.27 E-value=81 Score=22.39 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=29.4
Q ss_pred Cccccccc-CCCCEEEE--EE-----eCCCChhhhhhccHHHHHHHHhCcCCeEEEE
Q psy6924 34 EPLSLNSH-LKNKIVIM--DF-----FTYCCINCMHILPIPILIRHILEYKRTHIIK 82 (89)
Q Consensus 34 ~~~~l~~~-~~gk~vvv--~F-----wa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~ 82 (89)
.+.+| ++ +.||--|| .| |..-|+.|...+..+.-...+....++.++.
T Consensus 62 G~~sL-adLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~ 117 (247)
T COG4312 62 GKKSL-ADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVA 117 (247)
T ss_pred cchhH-HHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEE
Confidence 46777 45 46664333 33 5668999998888776555555544444443
No 262
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=29.98 E-value=84 Score=20.53 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=24.8
Q ss_pred CEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEEee
Q psy6924 45 KIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQI 86 (89)
Q Consensus 45 k~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~~ 86 (89)
-.++|-||..+-. ..+.++++.++.+++.+.++++++.
T Consensus 41 D~i~lG~w~d~G~----~d~~~~~fl~~l~~KkV~lF~T~G~ 78 (160)
T PF12641_consen 41 DLIFLGFWIDKGT----PDKDMKEFLKKLKGKKVALFGTAGA 78 (160)
T ss_pred CEEEEEcCccCCC----CCHHHHHHHHHccCCeEEEEEecCC
Confidence 3677788877742 2344555556677778888877764
No 263
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=28.87 E-value=50 Score=20.02 Aligned_cols=20 Identities=10% Similarity=0.075 Sum_probs=15.6
Q ss_pred EEEeCCCChhhhhhccHHHH
Q psy6924 49 MDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 49 v~Fwa~wC~~C~~~~p~l~~ 68 (89)
.-|..+.|..|++...+|++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE 21 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 35778899999998766665
No 264
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=27.75 E-value=34 Score=25.24 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=19.8
Q ss_pred CCCChhhhhhccHHHHHHHHhCc
Q psy6924 53 TYCCINCMHILPIPILIRHILEY 75 (89)
Q Consensus 53 a~wC~~C~~~~p~l~~l~~~~~~ 75 (89)
.++||.|...+..|+++.+++.+
T Consensus 94 ~t~~p~~~~~~~~lq~~~~~lN~ 116 (361)
T PF06122_consen 94 QTLCPQCGNIMDKLQKIAQALNQ 116 (361)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHh
Confidence 46999999999999999888654
No 265
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=27.35 E-value=95 Score=19.45 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=17.5
Q ss_pred cCCCcccccccCCCCEEEEEE--eCCCChhh
Q psy6924 31 NTTEPLSLNSHLKNKIVIMDF--FTYCCINC 59 (89)
Q Consensus 31 ~~g~~~~l~~~~~gk~vvv~F--wa~wC~~C 59 (89)
|+|++... +|.||.+-= .|++|..|
T Consensus 54 nDGkQTPm----rGHPVFiAQHATatCCRgC 80 (111)
T PF13811_consen 54 NDGKQTPM----RGHPVFIAQHATATCCRGC 80 (111)
T ss_pred CCCCCCCC----CCCCeeeecCCCccchHHH
Confidence 44666554 789988865 45688888
No 266
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=26.54 E-value=1.2e+02 Score=19.73 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=10.2
Q ss_pred cCCCCEEEEEEeC
Q psy6924 41 HLKNKIVIMDFFT 53 (89)
Q Consensus 41 ~~~gk~vvv~Fwa 53 (89)
+.+||+||+.-..
T Consensus 45 DVkGKIVlv~~g~ 57 (151)
T cd04822 45 DVKGKIVLVLRHE 57 (151)
T ss_pred CCCCeEEEEEcCC
Confidence 6799999986553
No 267
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=26.24 E-value=1.1e+02 Score=19.76 Aligned_cols=36 Identities=3% Similarity=-0.134 Sum_probs=30.9
Q ss_pred cCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcC
Q psy6924 41 HLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76 (89)
Q Consensus 41 ~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~ 76 (89)
...++-+.+.+.+++.+-|.-....++.+++.|.+.
T Consensus 124 ~~~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~ 159 (171)
T PF07700_consen 124 EEDDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFEL 159 (171)
T ss_dssp EEETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEE
T ss_pred ECCCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCC
Confidence 345667788999999999999999999999999873
No 268
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=25.54 E-value=69 Score=22.99 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=12.2
Q ss_pred CCCChhhhhh--ccHHHHHHHHh
Q psy6924 53 TYCCINCMHI--LPIPILIRHIL 73 (89)
Q Consensus 53 a~wC~~C~~~--~p~l~~l~~~~ 73 (89)
..||+.|-.. .-.+++..++.
T Consensus 7 ~~~CpGCg~~~il~al~~al~~l 29 (279)
T PRK11866 7 PIWCPGCGNYGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCChHHHHHHHHHHHHh
Confidence 4799999644 33444444443
No 269
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=25.37 E-value=62 Score=19.67 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=15.8
Q ss_pred EEeCCCChhhhhhccHHHH
Q psy6924 50 DFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~ 68 (89)
-|..+.|..|++...+|++
T Consensus 3 iy~~~~C~t~rkA~~~L~~ 21 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLED 21 (114)
T ss_pred EEECCCCHHHHHHHHHHHH
Confidence 5778899999998877766
No 270
>PRK10853 putative reductase; Provisional
Probab=25.35 E-value=72 Score=19.69 Aligned_cols=20 Identities=5% Similarity=-0.243 Sum_probs=16.1
Q ss_pred EEEeCCCChhhhhhccHHHH
Q psy6924 49 MDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 49 v~Fwa~wC~~C~~~~p~l~~ 68 (89)
.-|..+.|..|+.....|++
T Consensus 3 ~iy~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 3 TLYGIKNCDTIKKARRWLEA 22 (118)
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 45778899999998877765
No 271
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=25.34 E-value=66 Score=23.31 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=6.1
Q ss_pred CCChhhhh
Q psy6924 54 YCCINCMH 61 (89)
Q Consensus 54 ~wC~~C~~ 61 (89)
.||+.|-.
T Consensus 19 ~~CpGCg~ 26 (301)
T PRK05778 19 TWCPGCGN 26 (301)
T ss_pred CCCCCCCC
Confidence 59999953
No 272
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.16 E-value=1.2e+02 Score=20.28 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=32.3
Q ss_pred CCCCEEEEEEeCC--CChhhh-hhccHHHHHHHHhCcCCeEEEEEEeee
Q psy6924 42 LKNKIVIMDFFTY--CCINCM-HILPIPILIRHILEYKRTHIIKTFQIN 87 (89)
Q Consensus 42 ~~gk~vvv~Fwa~--wC~~C~-~~~p~l~~l~~~~~~~~~~vi~~~~~~ 87 (89)
++||.|+ .|-.+ --|.|. ...|-+.+++++++.+++--|-..-+|
T Consensus 35 f~gKkVv-lf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 35 FKGKKVV-LFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cCCCEEE-EEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 4777655 35444 456665 488999999999999988777666655
No 273
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=24.97 E-value=1.6e+02 Score=17.61 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=14.9
Q ss_pred EEEEeCCCChhhhhhc-cHHHH
Q psy6924 48 IMDFFTYCCINCMHIL-PIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~-p~l~~ 68 (89)
|-.||-+-||.|+++. -.|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 4468889999999764 34444
No 274
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=24.92 E-value=91 Score=22.49 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=31.3
Q ss_pred CCcccccccCCCCEEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEEEEe
Q psy6924 33 TEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQ 85 (89)
Q Consensus 33 g~~~~l~~~~~gk~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~~~~ 85 (89)
|..+.+ -+.++..|.|.|-+. |..|....-.|+.+.+..++.--.++.+.+
T Consensus 239 GGdv~l-v~v~~~~v~v~l~Ga-C~gC~~s~~Tl~~Ie~~l~~~~p~~~~V~~ 289 (290)
T TIGR02000 239 GGDVEL-YDVDGKIVYVVLTGA-CSGCSMSTMTLKGIQQRLRERLGEFVVVEA 289 (290)
T ss_pred CCcEEE-EEEeCCEEEEEEeeC-CCCCcchHHHHHHHHHHHHHhCCCceEEEe
Confidence 667777 577777777777765 566776666666655555543333444443
No 275
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=24.79 E-value=47 Score=17.88 Aligned_cols=15 Identities=7% Similarity=0.173 Sum_probs=12.0
Q ss_pred CCChhhhhhccHHHH
Q psy6924 54 YCCINCMHILPIPIL 68 (89)
Q Consensus 54 ~wC~~C~~~~p~l~~ 68 (89)
++|+.|++....++.
T Consensus 14 s~sp~~~~v~~~L~~ 28 (72)
T cd03054 14 SLSPECLKVETYLRM 28 (72)
T ss_pred CCCHHHHHHHHHHHh
Confidence 699999988777665
No 276
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.56 E-value=63 Score=17.98 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=24.7
Q ss_pred CCCChhhhhhcc-HHHHHHHHhCcCCeEEEEEEee
Q psy6924 53 TYCCINCMHILP-IPILIRHILEYKRTHIIKTFQI 86 (89)
Q Consensus 53 a~wC~~C~~~~p-~l~~l~~~~~~~~~~vi~~~~~ 86 (89)
++.|+-|....+ ..+++.+..++.++.+-+++.+
T Consensus 38 ~~~CG~al~~~~~d~~~i~~~l~~~~i~~~~iy~~ 72 (73)
T PF11823_consen 38 SAGCGLALRFEPEDLEKIKEILEENGIEYEGIYEI 72 (73)
T ss_pred cCCCCEEEEEChhhHHHHHHHHHHCCCCeeEEEEe
Confidence 567998887765 6677777777777777776654
No 277
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.49 E-value=1e+02 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=23.1
Q ss_pred hhhhhhccHHHHHHHHhCcCCeEEEEEEeeec
Q psy6924 57 INCMHILPIPILIRHILEYKRTHIIKTFQINF 88 (89)
Q Consensus 57 ~~C~~~~p~l~~l~~~~~~~~~~vi~~~~~~~ 88 (89)
.+|.+++..+++++++++.. +++=.+-|||
T Consensus 169 kHsv~iMk~Lrrla~el~Kt--iviVlHDINf 198 (252)
T COG4604 169 KHSVQIMKILRRLADELGKT--IVVVLHDINF 198 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCe--EEEEEecccH
Confidence 47889999999999999643 4444677777
No 278
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=23.83 E-value=97 Score=19.42 Aligned_cols=21 Identities=14% Similarity=0.013 Sum_probs=16.5
Q ss_pred EEEEeCCCChhhhhhccHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~ 68 (89)
+.-+.-+.|..|+.....|++
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 345777899999998877765
No 279
>PTZ00304 NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Probab=23.76 E-value=50 Score=25.56 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=17.0
Q ss_pred CChhhhhhccHHHHHHHHhC
Q psy6924 55 CCINCMHILPIPILIRHILE 74 (89)
Q Consensus 55 wC~~C~~~~p~l~~l~~~~~ 74 (89)
+|.||+...+.+.++-++..
T Consensus 369 QCtPCReGt~~L~~iL~~i~ 388 (461)
T PTZ00304 369 QCTPCREGTPWLVKMMERFV 388 (461)
T ss_pred CCCChHhHHHHHHHHHHHHH
Confidence 89999999999988877644
No 280
>PRK10026 arsenate reductase; Provisional
Probab=23.39 E-value=89 Score=20.14 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=16.8
Q ss_pred EEEEeCCCChhhhhhccHHHH
Q psy6924 48 IMDFFTYCCINCMHILPIPIL 68 (89)
Q Consensus 48 vv~Fwa~wC~~C~~~~p~l~~ 68 (89)
+.-++.+.|..|+....+|++
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN 24 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 446788999999998877765
No 281
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=23.28 E-value=46 Score=25.79 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=19.3
Q ss_pred EeCC----CChhhhhhccHHHHHHHHhC
Q psy6924 51 FFTY----CCINCMHILPIPILIRHILE 74 (89)
Q Consensus 51 Fwa~----wC~~C~~~~p~l~~l~~~~~ 74 (89)
|++. +|.||+.-.+.+.++.++..
T Consensus 371 F~a~ESCGqCtPCReGt~~l~~iL~ri~ 398 (461)
T PLN03132 371 FYKHESCGQCTPCREGTGWLWDIMERMK 398 (461)
T ss_pred HHhccCCCCCCChhhHHHHHHHHHHHHH
Confidence 6655 89999999999988877654
No 282
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=23.23 E-value=54 Score=17.51 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=14.3
Q ss_pred EEeCCCChhhhhhccHHHHH
Q psy6924 50 DFFTYCCINCMHILPIPILI 69 (89)
Q Consensus 50 ~Fwa~wC~~C~~~~p~l~~l 69 (89)
-|+.+.|+.|++..-.+++.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~ 22 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL 22 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc
Confidence 46778899998766666554
No 283
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=21.10 E-value=1.6e+02 Score=16.19 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=23.9
Q ss_pred ccCCCCEEEEEEeCCCChhhh-hhccHHHHHHHHhCcCCeEEE
Q psy6924 40 SHLKNKIVIMDFFTYCCINCM-HILPIPILIRHILEYKRTHII 81 (89)
Q Consensus 40 ~~~~gk~vvv~Fwa~wC~~C~-~~~p~l~~l~~~~~~~~~~vi 81 (89)
+.+++-++.+.=-+..|+... ++...++++...|+++.+.++
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V 53 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVV 53 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEE
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 344544433333455788875 566788889999987765444
No 284
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=20.96 E-value=1.2e+02 Score=18.27 Aligned_cols=23 Identities=9% Similarity=-0.184 Sum_probs=18.9
Q ss_pred ccHHHHHHHHhCcCCeEEEEEEe
Q psy6924 63 LPIPILIRHILEYKRTHIIKTFQ 85 (89)
Q Consensus 63 ~p~l~~l~~~~~~~~~~vi~~~~ 85 (89)
...++++.+.|++..++.||..+
T Consensus 52 ~~~i~~i~~~fP~~kfiLIGDsg 74 (100)
T PF09949_consen 52 RDNIERILRDFPERKFILIGDSG 74 (100)
T ss_pred HHHHHHHHHHCCCCcEEEEeeCC
Confidence 35688999999999999998643
No 285
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.92 E-value=25 Score=24.89 Aligned_cols=12 Identities=33% Similarity=0.741 Sum_probs=9.3
Q ss_pred CCCChhhhhhcc
Q psy6924 53 TYCCINCMHILP 64 (89)
Q Consensus 53 a~wC~~C~~~~p 64 (89)
+.|||.|+...|
T Consensus 255 ty~Cp~CQ~~~~ 266 (269)
T PRK14811 255 THFCPQCQPLRP 266 (269)
T ss_pred cEECCCCcCCCC
Confidence 469999987665
No 286
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.56 E-value=1.6e+02 Score=20.53 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=26.2
Q ss_pred EEEEEEeCCCChhhhhhccHHHHHHHHhCcCCeEEEE
Q psy6924 46 IVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIK 82 (89)
Q Consensus 46 ~vvv~Fwa~wC~~C~~~~p~l~~l~~~~~~~~~~vi~ 82 (89)
++||.+ ++=+......|.++.+.++|++..+.++.
T Consensus 2 ILiir~--~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~ 36 (319)
T TIGR02193 2 ILIVKT--SSLGDVIHTLPALTDIKRALPDVEIDWVV 36 (319)
T ss_pred EEEEec--ccHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 445554 35677788899999999999987776663
Done!