RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6924
(89 letters)
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 60.0 bits (145), Expect = 2e-12
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 22 DFCTKQEWMNTT--EPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
D W+NT +P+ L L+ K+V++DF+ Y CINC +P
Sbjct: 59 DLKGITGWLNTPGNKPIDL-KSLRGKVVLIDFWAYSCINCQRAIP 102
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural
genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 54.4 bits (131), Expect = 5e-11
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 22 DFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINC-MHILP 64
+ Q+W N+ L+L + L+ K+++++ F C C MH +P
Sbjct: 8 EL-QIQQWFNSATDLTL-ADLRGKVIVIEAFQMLCPGCVMHGIP 49
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR
{Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 51.9 bits (125), Expect = 3e-10
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 22 DFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
+ ++ W+N E + K ++ F++ C C +P
Sbjct: 9 ELTGEKAWLNG-EVTRE-QLIGEKPTLIHFWSISCHLCKEAMP 49
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 48.7 bits (116), Expect = 8e-09
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 25 TKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCM-HILP 64
QEW+N E LS L+ K+V+++ F C C+ H +P
Sbjct: 13 DVQEWVNH-EGLSN-EDLRGKVVVVEVFQMLCPGCVNHGVP 51
>2l5o_A Putative thioredoxin; structural genomics, unknown function,
PSI-2, protein struct initiative; NMR {Neisseria
meningitidis serogroup B}
Length = 153
Score = 31.5 bits (72), Expect = 0.018
Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
+ +S + L+ K+ +++F+ C C+ +P
Sbjct: 19 KTVSN-ADLQGKVTLINFWFPSCPGCVSEMP 48
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase;
1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A
2fy6_A
Length = 164
Score = 29.7 bits (67), Expect = 0.062
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
P S+ K+K ++ F+ C C+ L
Sbjct: 29 RPASVYL-KKDKPTLIKFWASWCPLCLSELG 58
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A
{Salmonella enterica subsp}
Length = 189
Score = 28.8 bits (63), Expect = 0.19
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 38 LNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILE 74
+ + + +++FF++ C C + + I
Sbjct: 8 ITPPVVDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRH 44
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 28.2 bits (62), Expect = 0.28
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 38 LNSHLKNKIVIMDFFTYCCINCMHILPI 65
L + +++FF++ C +C +
Sbjct: 107 LEKPVAGAPQVLEFFSFFCPHCYQFEEV 134
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 27.7 bits (62), Expect = 0.39
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 34 EPLSLNSH-LKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQI 86
E ++ +S K K ++++F+ + L YK+ K +
Sbjct: 22 EKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREI---YKKYKKNKYIGM 72
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 27.3 bits (59), Expect = 0.62
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 44 NKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76
+ + F C +C ++ +I
Sbjct: 22 GMAPVTEVFALSCGHCRNMENFLPVISQEAGTD 54
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 27.1 bits (59), Expect = 0.67
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 19 HGRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPI 65
+ D+ +E++ + P+ ++ KI +++ F Y C +C P
Sbjct: 2 NADDYTAGKEYVELSSPVPVSQ--PGKIEVVELFWYGCPHCYAFEPT 46
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria
meningitidis serogroup B} PDB: 3dvx_A
Length = 195
Score = 27.1 bits (59), Expect = 0.73
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 44 NKIVIMDFFTYCCINCMHILPI 65
KI +++FF Y C++C H P+
Sbjct: 22 GKIEVLEFFGYFCVHCHHFDPL 43
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 27.2 bits (59), Expect = 0.75
Identities = 5/37 (13%), Positives = 19/37 (51%)
Query: 38 LNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILE 74
L+ + + +++FF++ C +C + + ++ +
Sbjct: 15 LDKPVAGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKK 51
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58}
PDB: 3dvw_A 3a3t_A
Length = 193
Score = 27.1 bits (59), Expect = 0.75
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 44 NKIVIMDFFTYCCINCMHILPI 65
K+ +++FF Y C +C H+ P+
Sbjct: 24 GKVEVLEFFGYFCPHCAHLEPV 45
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 26.7 bits (59), Expect = 0.81
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 25 TKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPI 65
TK+ W + KIV+ +F C I P
Sbjct: 31 TKERWDQKLS----EASRDGKIVLANFSARWCGPSRQIAPY 67
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 26.1 bits (58), Expect = 1.0
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 43 KNKIVIMDFFTYCCINCMHILPI 65
+K+V++DF C I P
Sbjct: 30 GDKLVVVDFSATWCGPSKMIKPF 52
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo
sapiens} PDB: 1xbs_A
Length = 149
Score = 26.5 bits (58), Expect = 1.1
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 43 KNKIVIMDFFTYCCINCMHILPI 65
K++++ F C+ + I
Sbjct: 22 AEKVLVLRFGRDEDPVCLQLDDI 44
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold,
structural genomics, montreal-kingsto bacterial
structural genomics initiative, BSGI; 1.70A {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Length = 174
Score = 26.2 bits (58), Expect = 1.3
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 39 NSHLKNKIVIMDF-FTYC 55
LK ++ + DF FT C
Sbjct: 28 LESLKGEVWLADFIFTNC 45
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A
3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 25.7 bits (57), Expect = 1.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 43 KNKIVIMDFFTYCCINCMHILPI 65
+K+V++DF C C I P
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPF 41
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 25.8 bits (57), Expect = 1.6
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 34 EPLSLNSHLKNKIVIMDFF-TYC--CINCMHILPIPILIRHILEYKR 77
+ ++L S L+ K+V++ F ++C C M P + + I +
Sbjct: 24 KQVTL-SSLRGKVVMLQFTASWCGVCRKEM-----PFIEKDIWLKHK 64
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 25.5 bits (56), Expect = 2.0
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 34 EPLSLNSHLKNKIVIMDFF-TYC--CINCMHILPIPILIRHILEYKRTHII 81
E +SLN+ + +VI+ F +C C+ +L R +Y+ +I
Sbjct: 28 EVISLNN-VGGDVVILWFMAAWCPSCVYMA-----DLLDRLTEKYREISVI 72
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 25.7 bits (56), Expect = 2.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 44 NKIVIMDFFTYCCINCMHILPI 65
KI +++FF Y C +C I P+
Sbjct: 25 GKIEVLEFFAYTCPHCAAIEPM 46
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 25.4 bits (56), Expect = 2.0
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 25 TKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPI 65
TKQE+ + N K+VI+DF C C I P+
Sbjct: 13 TKQEF----DTHMANGKDTGKLVIIDFTASWCGPCRVIAPV 49
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 25.3 bits (56), Expect = 2.2
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
+ L+ K K V + F+ C C+ LP
Sbjct: 13 KTYRLSD-YKGKKVYLKFWASWCSICLASLP 42
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 25.5 bits (55), Expect = 2.4
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 45 KIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQIN 87
KI +++ F Y C +C H +
Sbjct: 26 KIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFG 68
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 25.4 bits (55), Expect = 2.5
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 38 LNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHIL 73
L + + V+ +FF++ C +C PI ++ L
Sbjct: 12 LKTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQL 47
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 25.4 bits (56), Expect = 2.5
Identities = 4/53 (7%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQI 86
+L + ++ C C ++ ++ K ++
Sbjct: 22 VKGTL-YQFPAEYTLLFINNPGCHACAEMIE---GLKASPVINGFTAAKKLKV 70
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo
PSI-2, protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 25.1 bits (55), Expect = 2.7
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 29 WMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIK 82
++ E L + +++K++ +D FT C C + + + +Y H +
Sbjct: 13 ELSFPEAL-KRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVN 65
>3me7_A Putative uncharacterized protein; electron transfer protein,
electron transport, structural GE PSI-2, protein
structure initiative; 1.50A {Aquifex aeolicus} PDB:
3me8_A
Length = 170
Score = 25.1 bits (55), Expect = 2.8
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 34 EPLSLNSHLKNKIVIMDF-FTYC 55
L + LK K +I+ +T+C
Sbjct: 19 NEFQLKN-LKGKPIILSPIYTHC 40
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 25.1 bits (55), Expect = 2.9
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 25 TKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPI 65
K E+ + + K+VI+DF C C I P+
Sbjct: 21 NKDEF----DAQMTKAKEAGKVVIIDFTASWCGPCRFIAPV 57
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 25.1 bits (55), Expect = 3.1
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 12/61 (19%)
Query: 31 NTTEPLSLNSHLKNKIVIMDFF-TYC--CINCMHILPIPILIRHILEYKRTHIIKTFQIN 87
++L L K V F ++C P LI YK K F++
Sbjct: 16 GAAADIAL-PSLAGKTVFFYFSASWCPPSRAFT-----PQLIDF---YKAHAEKKNFEVM 66
Query: 88 F 88
Sbjct: 67 L 67
>1gh2_A Thioredoxin-like protein; redox-active center, electron
transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 24.6 bits (54), Expect = 3.8
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 43 KNKIVIMDFFTYCCINCMHILPI 65
+++ ++ F C C+ I P
Sbjct: 20 GSRLAVVKFTMRGCGPCLRIAPA 42
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 24.9 bits (53), Expect = 4.3
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 45 KIVIMDFFTYCCINCMHILP 64
++ F+Y C C
Sbjct: 18 DKTLIKVFSYACPFCYKYDK 37
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 24.6 bits (54), Expect = 4.8
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYK 76
L ++ K I+ F+ C +C P L L+ +
Sbjct: 22 TYRYL-YDVQAKYTILFFWDSQCGHCQQE--TPKLYDWWLKNR 61
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 24.4 bits (53), Expect = 5.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 43 KNKIVIMDFFTYCCINC 59
K K V++D + C+ C
Sbjct: 30 KGKPVMLDLYADWCVAC 46
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel,
licmsn, substrate specificity, acyltransferase,
amino-acid biosynthesis; 2.00A {Leptospira interrogans}
PDB: 3blf_A 3bli_A*
Length = 337
Score = 24.4 bits (54), Expect = 5.4
Identities = 4/21 (19%), Positives = 13/21 (61%)
Query: 30 MNTTEPLSLNSHLKNKIVIMD 50
M ++ +S + ++ ++ I+D
Sbjct: 4 MGRSQKVSQMTKVETRLEILD 24
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 24.2 bits (53), Expect = 5.7
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQI 86
+ + S LK + ++ F+ C NC L I + T ++
Sbjct: 18 DNSRM-SRLKAQYTMLFFYDPDCSNCRKFEK---LFAEIPAFVEMVENGTLRV 66
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like,
NEW YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 23.9 bits (52), Expect = 7.8
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILP 64
SL + LK K+V++DF Y
Sbjct: 26 NTRSL-TDLKGKVVLIDFTVYNNAMSAAHNL 55
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein;
HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10
PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A
3c71_A 3c73_A
Length = 151
Score = 23.8 bits (52), Expect = 8.8
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 34 EPLSLNSHLKNKIVIMDFF-TYC--CINCMHILPIPILIRHILEYK 76
+ + L S LK K V ++F+ T+C C P + +K
Sbjct: 17 KRIEL-SDLKGKGVFLNFWGTWCEPCKKEF-----PYMANQYKHFK 56
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 23.4 bits (51), Expect = 9.4
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 25 TKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPI 65
+K W + ++K +++DF C C I P+
Sbjct: 9 SKAAW----DAQLAKGKEEHKPIVVDFTATWCGPCKMIAPL 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.333 0.144 0.489
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,399,180
Number of extensions: 65672
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 54
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 51 (23.4 bits)