RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6924
         (89 letters)



>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
          {Bacillus subtilis [TaxId: 1423]}
          Length = 143

 Score = 30.7 bits (68), Expect = 0.012
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 22 DFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRH 71
          +   ++ W+N     +    +  K  ++ F++  C  C   +P     R 
Sbjct: 9  ELTGEKAWLNGEV--TREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRD 56


>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide
          reductase MsrA/MsrB, N-terminal domain {Neisseria
          meningitidis serogroup A [TaxId: 65699]}
          Length = 143

 Score = 30.3 bits (67), Expect = 0.019
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 34 EPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQINFK 89
           P S+    K+K  ++ F+   C  C+  L          ++   ++I      F 
Sbjct: 14 RPASVYL-KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFL 68


>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
           {Escherichia coli [TaxId: 562]}
          Length = 195

 Score = 29.6 bits (66), Expect = 0.032
 Identities = 6/48 (12%), Positives = 19/48 (39%)

Query: 38  LNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQ 85
           L   +     +++FF++ C +C     +  +  ++ +     +  T  
Sbjct: 107 LEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKY 154


>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 135

 Score = 27.9 bits (61), Expect = 0.12
 Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 1/46 (2%)

Query: 20 GRDFCTKQEWMNTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPI 65
          G+ F     W    +     +      +++      C  C  + P 
Sbjct: 2  GKGFGDHIHWRTLEDGKKE-AAASGLPLMVIIHKSWCGACKALKPK 46


>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY,
          DsbE) {Escherichia coli [TaxId: 562]}
          Length = 136

 Score = 26.1 bits (56), Expect = 0.48
 Identities = 5/59 (8%), Positives = 14/59 (23%)

Query: 31 NTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQINFK 89
          N  +    +   + K V+++ +   C            +            K  +    
Sbjct: 7  NPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAI 65


>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata
          [TaxId: 5656]}
          Length = 144

 Score = 25.9 bits (56), Expect = 0.51
 Identities = 7/36 (19%), Positives = 9/36 (25%), Gaps = 1/36 (2%)

Query: 31 NTTEPLSLNSHLKNKIVIMDFFTYCCINCMHILPIP 66
               ++L   L  K V   F    C       P  
Sbjct: 16 GAAADIAL-PSLAGKTVFFYFSASWCPPSRAFTPQL 50


>d1h59b_ g.3.9.1 (B:) Insulin-like growth factor-binding protein-5
          (IGFBP-5) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 45

 Score = 23.6 bits (51), Expect = 1.5
 Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 9/32 (28%)

Query: 3  YTGHCSF---------VPVPLVAIFHGRDFCT 25
          YT  C+             PL A+ HGR  C 
Sbjct: 12 YTERCAQGLRCLPRQDEEKPLHALLHGRGVCL 43


>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 111

 Score = 24.5 bits (52), Expect = 1.7
 Identities = 9/48 (18%), Positives = 16/48 (33%)

Query: 40 SHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQIN 87
          +    K+V++DFF   C  C  I P  + +          +       
Sbjct: 21 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDEC 68


>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator
          (DsbA) {Escherichia coli [TaxId: 562]}
          Length = 188

 Score = 23.8 bits (50), Expect = 3.3
 Identities = 5/28 (17%), Positives = 13/28 (46%)

Query: 38 LNSHLKNKIVIMDFFTYCCINCMHILPI 65
          L   +     +++FF++ C +C     +
Sbjct: 12 LEKPVAGAPQVLEFFSFFCPHCYQFEEV 39


>d1wqjb1 g.3.9.1 (B:3-82) Insulin-like growth factor-binding
          protein 4 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 23.3 bits (50), Expect = 3.3
 Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 9/33 (27%)

Query: 3  YTGHC---------SFVPVPLVAIFHGRDFCTK 26
          YT  C           V  PL  + HG+  C +
Sbjct: 47 YTPRCGSGLRCYPPRGVEKPLHTLMHGQGVCME 79


>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 137

 Score = 23.2 bits (49), Expect = 5.7
 Identities = 4/22 (18%), Positives = 11/22 (50%)

Query: 43 KNKIVIMDFFTYCCINCMHILP 64
          ++++V++ F       CM +  
Sbjct: 21 EDRVVVIRFGHDWDPTCMKMDE 42


>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1
          (YpmQ), soluble domain {Baker's yeast(Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 169

 Score = 22.4 bits (46), Expect = 9.3
 Identities = 6/50 (12%), Positives = 12/50 (24%)

Query: 39 NSHLKNKIVIMDFFTYCCINCMHILPIPILIRHILEYKRTHIIKTFQINF 88
            +L  K  I+ F    C +        + +       +  I        
Sbjct: 21 EKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFIT 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.144    0.489 

Gapped
Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,035
Number of extensions: 15378
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 30
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 47 (22.6 bits)