RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6925
(131 letters)
>gnl|CDD|189008 cd09601, M1_APN_2, Peptidase M1 Aminopeptidase N family incudes
tricorn interacting factor F3, Endoplasmic reticulum
aminopeptidase 1 (ERAP1), Aminopeptidase Q (APQ). This
M1 peptidase family includes eukaryotic and bacterial
members: aminopeptidase N (APN), aminopeptidase Q (APQ,
laeverin), endoplasmic reticulum aminopeptidase 1
(ERAP1) as well as tricorn interacting factor F3.
Aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC
3.4.11.2), a Type II integral membrane protease,
consists of a small N-terminal cytoplasmic domain, a
single transmembrane domain and a large extracellular
ectodomain that contains the active site. It
preferentially cleaves neutral amino acids from the
N-terminus of oligopeptides and is present in a variety
of human tissues and cell types (leukocyte, fibroblast,
endothelial and epithelial cells). APN expression is
dysregulated in inflammatory diseases such as chronic
pain, rheumatoid arthritis, multiple sclerosis, systemic
sclerosis, systemic lupus erythematosus,
polymyositis/dermatomyosytis and pulmonary sarcoidosis,
and is enhanced in tumor cells such as melanoma, renal,
prostate, pancreas, colon, gastric and thyroid cancers.
It is considered a marker of differentiation since it is
predominantly expressed on stem cells and on cells of
the granulocytic and monocytic lineages at distinct
stages of differentiation. Thus, APN inhibition may lead
to the development of anti-cancer and anti-inflammatory
drugs. ERAP1 also known as endoplasmic reticulum
aminopeptidase associated with antigen processing
(ERAAP), adipocyte derived leucine aminopeptidase
(A-LAP) or aminopeptidase regulating tumor necrosis
factor receptor I (THFRI) shedding (ARTS-1), associates
with the closely related ER aminopeptidase ERAP2, for
the final trimming of peptides within the ER for
presentation by MHC class I molecules. ERAP1 is
associated with ankylosing spondylitis (AS), an
inflammatory arthritis that predominantly affects the
spine. ERAP1 also aids in the shedding of membrane-bound
cytokine receptors. The tricorn interacting factor F3,
together with factors F1 and F2, degrades the tricorn
protease products, producing free amino acids, thus
completing the proteasomal degradation pathway. F3 is
homologous to F2, but not F1, and shows a strong
preference for glutamate in the P1' position. APQ, also
known as laeverin, is specifically expressed in human
embryo-derived extravillous trophoblasts (EVTs) that
invade the uterus during early placentation. It cleaves
the N-terminal amino acid of various peptides such as
angiotensin III, endokinin C, and kisspeptin-10, all
expressed in the placenta in large quantities. APN is a
receptor for coronaviruses, although the virus receptor
interaction site seems to be distinct from the enzymatic
site and aminopeptidase activity is not necessary for
viral infection. APNs are also putative Cry toxin
receptors. Cry1 proteins are pore-forming toxins that
bind to the midgut epithelial cell membrane of
susceptible insect larvae, causing extensive damage.
Several different toxins, including Cry1Aa, Cry1Ab,
Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to
bind to APNs; however, a direct role of APN in
cytotoxicity has been yet to be firmly established.
Length = 446
Score = 255 bits (655), Expect = 2e-85
Identities = 88/131 (67%), Positives = 104/131 (79%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
MSTYLVA VVG+FDYVE T+ +GV VRVY GK EQG +AL VA K+L F++DYF I Y
Sbjct: 181 MSTYLVAFVVGDFDYVEGTTKNGVPVRVYARPGKIEQGDYALEVAPKILEFFEDYFGIPY 240
Query: 61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
PLPK+DLVA+PDF+ GAMENWGL+TYRE LL D + +SA +Q +A VV HELAHQWFG
Sbjct: 241 PLPKLDLVAIPDFAAGAMENWGLITYRETALLYDPKTSSASNKQRVATVVAHELAHQWFG 300
Query: 121 NLVTMEWWTHL 131
NLVTM+WW L
Sbjct: 301 NLVTMKWWDDL 311
>gnl|CDD|216501 pfam01433, Peptidase_M1, Peptidase family M1. Members of this
family are aminopeptidases. The members differ widely in
specificity, hydrolysing acidic, basic or neutral
N-terminal residues. This family includes leukotriene-A4
hydrolase, this enzyme also has an aminopeptidase
activity.
Length = 390
Score = 226 bits (577), Expect = 2e-74
Identities = 76/131 (58%), Positives = 95/131 (72%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
MSTYL+A VG+ +Y+E + GV VRVY G GQ+AL V K+L F++DYF Y
Sbjct: 190 MSTYLLAFAVGDLEYLETKTKSGVPVRVYARPGAINAGQYALEVTQKLLEFFEDYFGFPY 249
Query: 61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
PLPK+D VA+PDFS GAMENWGL+TYRE LL D N+++ +Q +A V+ HELAHQWFG
Sbjct: 250 PLPKLDQVALPDFSAGAMENWGLITYREPALLYDPGNSTSSDKQRVAEVIAHELAHQWFG 309
Query: 121 NLVTMEWWTHL 131
NLVTM+WW L
Sbjct: 310 NLVTMDWWDDL 320
>gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and
metabolism].
Length = 859
Score = 171 bits (436), Expect = 6e-51
Identities = 64/134 (47%), Positives = 87/134 (64%), Gaps = 4/134 (2%)
Query: 1 MSTYLVAVVVGEFDYVEE---TSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFN 57
M TYL A+V G+ + + T S V + +Y P G ++ ++AL + + FY++YF
Sbjct: 200 MPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFG 259
Query: 58 IAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQ 117
+ Y LP D+VAVPDFS GAMENWGLVT+RE LL D + + +N+ V+ HELAHQ
Sbjct: 260 LPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQ 318
Query: 118 WFGNLVTMEWWTHL 131
WFGNLVTM+WW L
Sbjct: 319 WFGNLVTMKWWDDL 332
>gnl|CDD|189009 cd09602, M1_APN_3, Peptidase M1 family containing Aminopeptidase N.
This family contains bacterial and eukaryotic
aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC
3.4.11.2), a Type II integral membrane protease
belonging to the M1 gluzincin family. APN consists of a
small N-terminal cytoplasmic domain, a single
transmembrane domain and a large extracellular
ectodomain that contains the active site. It
preferentially cleaves neutral amino acids from the
N-terminus of oligopeptides and, in higher eukaryotes,
is present in a variety of human tissues and cell types
(leukocyte, fibroblast, endothelial and epithelial
cells). APN expression is dysregulated in inflammatory
diseases such as chronic pain, rheumatoid arthritis,
multiple sclerosis, systemic sclerosis, systemic lupus
erythematosus, polymyositis/dermatomyosytis and
pulmonary sarcoidosis, and is enhanced in tumor cells
such as melanoma, renal, prostate, pancreas, colon,
gastric and thyroid cancers. It is predominantly
expressed on stem cells and on cells of the granulocytic
and monocytic lineages at distinct stages of
differentiation, thus considered a marker of
differentiation. Thus, APN inhibition may lead to the
development of anti-cancer and anti-inflammatory drugs.
APNs are also present in many pathogenic bacteria and
represent potential drug targets, Some APNs have been
used commercially, such as one from Lactococcus lactis
used in the food industry. APN also serves as a receptor
for coronaviruses, although the virus receptor
interaction site seems to be distinct from the enzymatic
site and aminopeptidase activity is not necessary for
viral infection. APNs have also been extensively studied
as putative Cry toxin receptors. Cry1 proteins are
pore-forming toxins that bind to the midgut epithelial
cell membrane of susceptible insect larvae, causing
extensive damage. Several different toxins, including
Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have
been shown to bind to APNs; however, a direct role of
APN in cytotoxicity has been yet to be firmly
established.
Length = 438
Score = 120 bits (304), Expect = 1e-33
Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 12/135 (8%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLP-------FYK 53
+STYL A V G + + + DG+ + +Y + Q A ++ F++
Sbjct: 175 LSTYLFAFVAGPYHVISDKEHDGIPLGLYC---RESLAQALDRDADEIFEITKQGLDFFE 231
Query: 54 DYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHE 113
+YF I YP K D V VP+F+ GAMEN G VT+RE + + T+A R A + HE
Sbjct: 232 EYFGIPYPFGKYDQVFVPEFNFGAMENPGCVTFREN-YVFREEVTTAQ-RLRRANTIAHE 289
Query: 114 LAHQWFGNLVTMEWW 128
+AH WFG+LVTM+WW
Sbjct: 290 MAHMWFGDLVTMKWW 304
>gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans
type. This family is a subset of the members of the
zinc metallopeptidase family M1 (pfam01433), with a
single member characterized in Streptomyces lividans 66
and designated aminopeptidase N. The spectrum of
activity may differ somewhat from the aminopeptidase N
clade of E. coli and most other Proteobacteria, well
separated phylogenetically within the M1 family. The M1
family also includes leukotriene A-4
hydrolase/aminopeptidase (with a bifunctional active
site).
Length = 831
Score = 105 bits (263), Expect = 2e-27
Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQ--GQFALHVASKVLPFYKDYFNI 58
+STYL AV G + + + S + +Y + + + L F+ F
Sbjct: 183 LSTYLTAVAAGPY-HSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGY 241
Query: 59 AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
YP K D + VP+F+ GAMEN G VT+ E L ++ T A ++N A V+ HE+AH W
Sbjct: 242 PYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAEATRA-EKENRAGVILHEMAHMW 299
Query: 119 FGNLVTMEWWTHL 131
FG+LVTM WW L
Sbjct: 300 FGDLVTMRWWNDL 312
>gnl|CDD|189010 cd09603, M1_APN_4, Peptidase M1 family Aminopeptidase N. This
family contains mostly bacterial and some archaeal
aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC
3.4.11.2), a Type II integral membrane protease
belonging to the M1 gluzincin family. APN consists of a
small N-terminal cytoplasmic domain, a single
transmembrane domain and a large extracellular
ectodomain that contains the active site. It
preferentially cleaves neutral amino acids from the
N-terminus of oligopeptides and, in higher eukaryotes,
is present in a variety of human tissues and cell types
(leukocyte, fibroblast, endothelial and epithelial
cells). APN expression is dysregulated in inflammatory
diseases such as chronic pain, rheumatoid arthritis,
multiple sclerosis, systemic sclerosis, systemic lupus
erythematosus, polymyositis/dermatomyosytis and
pulmonary sarcoidosis, and is enhanced in tumor cells
such as melanoma, renal, prostate, pancreas, colon,
gastric and thyroid cancers. It is predominantly
expressed on stem cells and on cells of the granulocytic
and monocytic lineages at distinct stages of
differentiation, thus considered a marker of
differentiation. Thus, APN inhibition may lead to the
development of anti-cancer and anti-inflammatory drugs.
APNs are also present in many pathogenic bacteria and
represent potential drug targets, Some APNs have been
used commercially, such as one from Lactococcus lactis
used in the food industry. APN also serves as a receptor
for coronaviruses, although the virus receptor
interaction site seems to be distinct from the enzymatic
site and aminopeptidase activity is not necessary for
viral infection. APNs have also been extensively studied
as putative Cry toxin receptors. Cry1 proteins are
pore-forming toxins that bind to the midgut epithelial
cell membrane of susceptible insect larvae, causing
extensive damage. Several different toxins, including
Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have
been shown to bind to APNs; however, a direct role of
APN in cytotoxicity has been yet to be firmly
established.
Length = 415
Score = 99 bits (250), Expect = 5e-26
Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
M+TYLV + VG ++ +E+T++ GV V Y P G + A ++L F+++ F Y
Sbjct: 170 MATYLVTLAVGRYEVLEDTTAGGVPVVYYVPPGLAADARRAFARTPEMLDFFEELF-GPY 228
Query: 61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
P K V V DF G MEN Y L D + ++ HELAHQWFG
Sbjct: 229 PFEKYGQVVVDDFLGGGMENQTRTVYGAGFLDGDRSSER---------LIAHELAHQWFG 279
Query: 121 NLVTMEWWTHL 131
+ VT W+ +
Sbjct: 280 DSVTCADWSDI 290
>gnl|CDD|189002 cd09595, M1, Peptidase M1 family contains aminopeptidase N and
leukotriene A4 hydrolase. M1 Peptidase family includes
aminopeptidase N (APN) and leukotriene A4 hydrolase
(LTA4H). All peptidases in this family bind a single
catalytic zinc ion which is tetrahedrally co-ordinated
by three amino acid ligands and a water molecule that
forms the nucleophile on activation during catalysis.
APN consists of a small N-terminal cytoplasmic domain, a
single transmembrane domain and a large extracellular
ectodomain that contains the active site. It
preferentially cleaves neutral amino acids from the
N-terminus of oligopeptides and is present in a variety
of human tissues and cell types. APN expression is
dysregulated in many inflammatory diseases and is
enhanced in numerous tumor cells, making it a lead
target in the development of anti-cancer and
anti-inflammatory drugs. LTA4H is a bifunctional enzyme,
possessing an aminopeptidase as well as an epoxide
hydrolase activity. The two activities occupy different,
but overlapping sites. The activity and physiological
relevance of the aminopeptidase in LTA4H is as yet
unknown while the epoxide hydrolase converts leukotriene
A4 (LTA4) into leukotriene B4 (LTB4), a potent
chemotaxin that is fundamental to the inflammatory
response of mammals.
Length = 407
Score = 99.4 bits (248), Expect = 9e-26
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 1 MSTYLVAVVVGEFDY-VEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIA 59
++ YL+A+VVG+ +Y V E + G+ + +Y L A FY+
Sbjct: 169 IAPYLIALVVGDLEYPVREQTVQGIPLHLYFLTPLAVDTVLRLQSAFL---FYETDLGGP 225
Query: 60 YPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
YP + D+V VP+F GAMEN GL+ + + LL + + V+ HELAHQWF
Sbjct: 226 YPYSEYDVVEVPEFPSGAMENPGLIFFSQSLLLAMIDAGD----ELLENVIAHELAHQWF 281
Query: 120 GNLVTMEWWTHL 131
GNLVT W L
Sbjct: 282 GNLVTGARWNDL 293
>gnl|CDD|233858 TIGR02414, pepN_proteo, aminopeptidase N, Escherichia coli type.
The M1 family of zinc metallopeptidases contains a
number of distinct, well-separated clades of proteins
with aminopeptidase activity. Several are designated
aminopeptidase N, EC 3.4.11.2, after the Escherichia
coli enzyme, suggesting a similar activity profile (see
SP|P04825 for a description of catalytic activity). This
family consists of all aminopeptidases closely related
to E. coli PepN and presumed to have similar (not
identical) function. Nearly all are found in
Proteobacteria, but members are found also in
Cyanobacteria, plants, and apicomplexan parasites. This
family differs greatly in sequence from the family of
aminopeptidases typified by Streptomyces lividans PepN
(TIGR02412), from the membrane bound aminopeptidase N
family in animals, etc [Protein fate, Degradation of
proteins, peptides, and glycopeptides].
Length = 863
Score = 92.0 bits (229), Expect = 1e-22
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 4 YLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIA 59
YL A+V G+ D +E+T S V +RVY G +++ A+ K + + ++ F +
Sbjct: 177 YLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLE 236
Query: 60 YPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
Y L +VAV DF+ GAMEN GL + +L D + + + I V+ HE H W
Sbjct: 237 YDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWT 296
Query: 120 GNLVTMEWWTHL 131
GN VT W L
Sbjct: 297 GNRVTCRDWFQL 308
>gnl|CDD|189007 cd09600, M1_APN_1, Peptidase M1 family containing Aminopeptidase N.
This family contains aminopeptidase N (APN; CD13;
Alanyl aminopeptidase; EC 3.4.11.2), a Type II integral
membrane protease belonging to the M1 gluzincin family.
It includes bacterial-type alanyl aminopeptidases as
well as PfA-M1 aminopeptidase (Plasmodium
falciparum-type). APN consists of a small N-terminal
cytoplasmic domain, a single transmembrane domain and a
large extracellular ectodomain that contains the active
site. It preferentially cleaves neutral amino acids from
the N-terminus of oligopeptides and, in higher
eukaryotes, is present in a variety of human tissues and
cell types (leukocyte, fibroblast, endothelial and
epithelial cells). APN expression is dysregulated in
inflammatory diseases such as chronic pain, rheumatoid
arthritis, multiple sclerosis, systemic sclerosis,
systemic lupus erythematosus,
polymyositis/dermatomyosytis and pulmonary sarcoidosis,
and is enhanced in tumor cells such as melanoma, renal,
prostate, pancreas, colon, gastric and thyroid cancers.
It is predominantly expressed on stem cells and on cells
of the granulocytic and monocytic lineages at distinct
stages of differentiation, thus considered a marker of
differentiation. Thus, APN inhibition may lead to the
development of anti-cancer and anti-inflammatory drugs.
APNs are also present in many pathogenic bacteria and
represent potential drug targets, Some APNs have been
used commercially, such as one from Lactococcus lactis
used in the food industry. APN also serves as a receptor
for coronaviruses, although the virus receptor
interaction site seems to be distinct from the enzymatic
site and aminopeptidase activity is not necessary for
viral infection. APNs have also been extensively studied
as putative Cry toxin receptors. Cry1 proteins are
pore-forming toxins that bind to the midgut epithelial
cell membrane of susceptible insect larvae, causing
extensive damage. Several different toxins, including
Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have
been shown to bind to APNs; however, a direct role of
APN in cytotoxicity has been yet to be firmly
established.
Length = 861
Score = 85.0 bits (211), Expect = 2e-20
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 4 YLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIA 59
YL A+V G+ +E+ S V + +Y G + A+ K + + +D F +
Sbjct: 177 YLFALVAGDLGVLEDKFTTKSGRKVALEIYVEPGDESKCAHAMESLKKSMKWDEDRFGLE 236
Query: 60 YPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
Y L ++VAV DF+ GAMEN GL + +L D + + + I V+GHE H W
Sbjct: 237 YDLDLFNIVAVDDFNMGAMENKGLNIFNSKLVLADPETATDADYERIESVIGHEYFHNWT 296
Query: 120 GNLVTMEWWTHL 131
GN VT W L
Sbjct: 297 GNRVTCRDWFQL 308
>gnl|CDD|189011 cd09604, M1_APN_5, Peptidase M1 family containing bacterial
Aminopeptidase N. This family contains bacterial
aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC
3.4.11.2), a Type II integral membrane protease
belonging to the M1 gluzincin family. APN consists of a
small N-terminal cytoplasmic domain, a single
transmembrane domain and a large extracellular
ectodomain that contains the active site. It
preferentially cleaves neutral amino acids from the
N-terminus of oligopeptides and, in higher eukaryotes,
is present in a variety of human tissues and cell types
(leukocyte, fibroblast, endothelial and epithelial
cells). APN expression is dysregulated in inflammatory
diseases such as chronic pain, rheumatoid arthritis,
multiple sclerosis, systemic sclerosis, systemic lupus
erythematosus, polymyositis/dermatomyosytis and
pulmonary sarcoidosis, and is enhanced in tumor cells
such as melanoma, renal, prostate, pancreas, colon,
gastric and thyroid cancers. It is predominantly
expressed on stem cells and on cells of the granulocytic
and monocytic lineages at distinct stages of
differentiation, thus considered a marker of
differentiation. Thus, APN inhibition may lead to the
development of anti-cancer and anti-inflammatory drugs.
APNs are also present in many pathogenic bacteria and
represent potential drug targets, Some APNs have been
used commercially, such as one from Lactococcus lactis
used in the food industry. APN also serves as a receptor
for coronaviruses, although the virus receptor
interaction site seems to be distinct from the enzymatic
site and aminopeptidase activity is not necessary for
viral infection. APNs have also been extensively studied
as putative Cry toxin receptors. Cry1 proteins are
pore-forming toxins that bind to the midgut epithelial
cell membrane of susceptible insect larvae, causing
extensive damage. Several different toxins, including
Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have
been shown to bind to APNs; however, a direct role of
APN in cytotoxicity has been yet to be firmly
established.
Length = 435
Score = 63.1 bits (154), Expect = 9e-13
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 7 AVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKID 66
A+ V+E + DG+ VR Y E + L A K L FY + F YP +
Sbjct: 201 ALAASPKFIVDEATVDGIKVRAYYFPEDAELAKRYLDAAKKALEFYSELF-GPYPYKEFS 259
Query: 67 LVAVPDFSCGAMENWGLVT-YREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLV 123
+V P G ME GL V L T V+ HE+AHQW+ +V
Sbjct: 260 VVENPFP--GGMEYPGLTLIGGRVLRLPFILET----------VLAHEIAHQWWYGIV 305
>gnl|CDD|237585 PRK14015, pepN, aminopeptidase N; Provisional.
Length = 875
Score = 54.0 bits (131), Expect = 1e-09
Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 30/138 (21%)
Query: 4 YLVAVVVGEFDYVEE---TSSDG--VLVRVYTPVGKREQGQFALHVASKVLPFYK----- 53
YL A+V G+ D +E+ T S G V + +Y G ++ A+ S L K
Sbjct: 190 YLFALVAGDLDVLEDTFTTRS-GREVALEIYVEPGNLDKCDHAM--DS--L---KKSMKW 241
Query: 54 --DYFNIAYPLPKIDL-----VAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNI 106
+ F + Y DL VAV DF+ GAMEN GL + +L D + + + I
Sbjct: 242 DEERFGLEY-----DLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERI 296
Query: 107 ALVVGHELAHQWFGNLVT 124
V+ HE H W GN VT
Sbjct: 297 ESVIAHEYFHNWTGNRVT 314
>gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4
hydrolase. This family includes leukotriene A4
hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog
cold-active aminopeptidase (Colwellia
psychrerythraea-type peptidase; ColAP), both members of
the aminopeptidase M1 family. LTA4H, is a bifunctional
enzyme possessing an aminopeptidase as well as an
epoxide hydrolase activity. The two activities occupy
different, but overlapping sites. The activity and
physiological relevance of the aminopeptidase is as yet
unknown while the epoxide hydrolase converts leukotriene
A4 (LTA4) into leukotriene B4 (LTB4), a potent
chemotaxin that is fundamental to the inflammatory
response of mammals. It accepts a variety of substrates,
including some opioid, di- and tripeptides, as well as
chromogenic aminoacyl-p-nitroanilide derivatives. The
aminopeptidase activity of LTA4H is possibly involved in
the processing of peptides related to inflammation and
host defense. Kinetic analysis shows that LTA4H
hydrolyzes arginyl tripeptides with high efficiency and
specificity, indicating its function as an arginyl
aminopeptidase. LTA4H is overexpressed in certain human
cancers, and has been identified as a functionally
important target for mediating anticancer properties of
resveratrol, a well known red wine polyphenolic compound
with cancer chemopreventive activity.
Length = 442
Score = 48.3 bits (116), Expect = 1e-07
Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 67 LVAVPDFSCGAMENWGLVTYREVCLLV-DSQNTSAITRQNIALVVGHELAHQWFGNLVTM 125
LV P F G MEN L T+ L+ D VV HE+AH W GNLVT
Sbjct: 252 LVLPPSFPYGGMENPCL-TFATPTLIAGDRSLVD---------VVAHEIAHSWSGNLVTN 301
Query: 126 EWWTHL 131
W H
Sbjct: 302 ATWEHF 307
>gnl|CDD|233856 TIGR02411, leuko_A4_hydro, leukotriene A-4
hydrolase/aminopeptidase. Members of this family
represent a distinctive subset within the zinc
metallopeptidase family M1 (pfam01433). The majority of
the members of pfam01433 are aminopeptidases, but the
sequences in this family for which the function is known
are leukotriene A-4 hydrolase. A dual epoxide hydrolase
and aminopeptidase activity at the same active site is
indicated. The physiological substrate for
aminopeptidase activity is not known.
Length = 602
Score = 47.8 bits (114), Expect = 2e-07
Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 67 LVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTME 126
LV P F G MEN L T+ L+ A R N+ V+ HELAH W GNLVT
Sbjct: 249 LVLPPSFPYGGMENPNL-TFATPTLI-------AGDRSNVD-VIAHELAHSWSGNLVTNC 299
Query: 127 WWTH 130
W H
Sbjct: 300 SWEH 303
>gnl|CDD|222169 pfam13485, Peptidase_MA_2, Peptidase MA superfamily.
Length = 128
Score = 36.4 bits (84), Expect = 9e-04
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 80 NWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL 131
G V Y L+V + + V+ HELAH GNLV
Sbjct: 1 WTGGVYYPGSRLIVP--RVAPGDPDELRGVLAHELAHVVLGNLVGGNGNLPR 50
>gnl|CDD|189001 cd09594, GluZincin, Peptidase Gluzincin family (thermolysin-like
proteinases, TLPs) includes peptidases M1, M2, M3, M4,
M13, M32 and M36 (fungalysins). Gluzincin family
(thermolysin-like peptidases or TLPs) includes several
zinc-dependent metallopeptidases such as the M1, M2, M3,
M4, M13, M32, M36 peptidases (MEROPS classification),
and contain HEXXH and EXXXD motifs as part of their
active site. All peptidases in this family bind a single
catalytic zinc ion which is tetrahedrally co-ordinated
by three amino acid ligands and a water molecule that
forms the nucleophile on activation during catalysis. M1
family includes aminopeptidase N (APN) and leukotriene
A4 hydrolase (LTA4H). APN preferentially cleaves
neutral amino acids from the N-terminus of oligopeptides
and is present in a variety of human tissues and cell
types. LTA4H is a bifunctional enzyme, possessing an
aminopeptidase as well as an epoxide hydrolase activity
such that the two activities occupy different, but
overlapping sites. The peptidase M3 or neurolysin-like
family, includes M3, M2 and M32 metallopeptidases. The
M3 peptidases have two subfamilies: M3A, includes thimet
oligopeptidase (TOP; endopeptidase 3.4.24.15),
neurolysin (3.4.24.16), and the mitochondrial
intermediate peptidase; M3B contains oligopeptidase F.
M2 peptidase angiotensin converting enzyme (ACE, EC
3.4.15.1) catalyzes the conversion of decapeptide
angiotensin I to the potent vasopressor octapeptide
angiotensin II. ACE is a key part of the
renin-angiotensin system that regulates blood pressure,
thus ACE inhibitors are important for the treatment of
hypertension. M32 family includes two eukaryotic enzymes
from protozoa Trypanosoma cruzi, a causative agent of
Chagas' disease, and Leishmania major, a parasite that
causes leishmaniasis, making them attractive targets for
drug development. The M4 family includes secreted
protease thermolysin (EC 3.4.24.27), pseudolysin,
aureolysin, neutral protease as well as fungalysin and
bacillolysin (EC 3.4.24.28) that degrade extracellular
proteins and peptides for bacterial nutrition,
especially prior to sporulation. Thermolysin is widely
used as a nonspecific protease to obtain fragments for
peptide sequencing as well as in production of the
artificial sweetener aspartame. M13 family includes
neprilysin (EC 3.4.24.11) and endothelin-converting
enzyme I (ECE-1, EC 3.4.24.71), which fulfill a broad
range of physiological roles due to the greater
variation in the S2' subsite allowing substrate
specificity and are prime therapeutic targets for
selective inhibition. Peptidase M36 (fungamysin) family
includes endopeptidases from pathogenic fungi.
Fungalysin hydrolyzes extracellular matrix proteins such
as elastin and keratin. Aspergillus fumigatus causes the
pulmonary disease aspergillosis by invading the lungs of
immuno-compromised animals and secreting fungalysin that
possibly breaks down proteinaceous structural barriers.
Length = 125
Score = 34.4 bits (79), Expect = 0.005
Identities = 15/73 (20%), Positives = 20/73 (27%), Gaps = 8/73 (10%)
Query: 56 FNIAYPLPKIDLVAVPD----FSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVG 111
+ P AM GL + D + + + VVG
Sbjct: 19 NKTDEVGGGYYSMVYPPSNQGKVNNAMC-NGLDARIVMN---DGILVAFLLDSDDFGVVG 74
Query: 112 HELAHQWFGNLVT 124
HEL H LV
Sbjct: 75 HELTHGVTDQLVG 87
>gnl|CDD|234944 PRK01345, PRK01345, heat shock protein HtpX; Provisional.
Length = 317
Score = 27.3 bits (61), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 99 SAITRQNIALVVGHELAH 116
++ + +A V+ HELAH
Sbjct: 117 QRLSPEEVAGVMAHELAH 134
>gnl|CDD|200403 TIGR04152, exosort_VPLPA, exosortase D, VPLPA-CTERM-specific. This
model describes a variant sub class, exosortase D, of
protein sorting enzyme (see parent exosortase model
TIGR02602), specific for the VPLPA-CTERM variant
(TIGR03370) of the PEP-CTERM protein sorting signal
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 486
Score = 27.3 bits (61), Expect = 2.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 21 SDGVLVRVYTPVGKRE 36
+DG LVRV TP+ E
Sbjct: 446 TDGALVRVITPIYPGE 461
>gnl|CDD|189018 cd09839, M1_TAF2, TATA binding protein (TBP) associated factor 2.
This family includes TATA binding protein (TBP)
associated factor 2 (TAF2, TBP-associated factor
TAFII150, transcription initiation factor TFIID subunit
2, RNA polymerase II TBP-associated factor subunit B),
and has homology to the aminopeptidase N (APN)
subfamily, belonging to the M1 gluzincin family. TAF2 is
part of the TFIID multidomain subunit complex essential
for transcription of most protein-encoded genes by RNA
polymerase II. TAF2 is known to interact with the
initiator element (Inr) found at the transcription start
site of many genes, thus possibly playing a key role in
promoter binding as well as start-site selection. Image
analysis has shown TAF2 to form a complex with TAF1 and
TBP, inferring its role in promoter recognition.
Peptidases in the M1 family bind a single catalytic zinc
ion which is tetrahedrally co-ordinated by three amino
acid ligands and a water molecule that forms the
nucleophile on activation during catalysis. TAF2,
however, does not seem to contain any of the active site
residues.
Length = 507
Score = 26.9 bits (60), Expect = 3.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 114 LAHQWFGNLVTMEWWTHL 131
LA QWFG ++ E W+
Sbjct: 322 LASQWFGCFISPEAWSDE 339
>gnl|CDD|235478 PRK05457, PRK05457, heat shock protein HtpX; Provisional.
Length = 284
Score = 26.3 bits (59), Expect = 4.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 102 TRQNIALVVGHELAHQWFGNLVTM 125
+R + V+ HE++H G++VTM
Sbjct: 130 SRDEVEAVLAHEISHIANGDMVTM 153
>gnl|CDD|233985 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase.
This enzyme, 5,10-methenyltetrahydrofolate synthetase,
is also called 5-formyltetrahydrofolate cycloligase.
Function of bacterial proteins in this family was
inferred originally from the known activity of
eukaryotic homologs. Recently, activity was shown
explicitly for the member from Mycoplasma pneumonia.
Members of this family from alpha- and
gamma-proteobacteria, designated ygfA, are often found
in an operon with 6S structural RNA, and show a similar
pattern of high expression during stationary phase. The
function may be to deplete folate to slow 1-carbon
biosynthetic metabolism [Central intermediary
metabolism, One-carbon metabolism].
Length = 179
Score = 26.1 bits (58), Expect = 5.6
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 10/55 (18%)
Query: 27 RVYTP-VGKREQGQFALHVASKVLPFYKDYFNI---------AYPLPKIDLVAVP 71
RV P V + + S P K F I P +IDL+ VP
Sbjct: 68 RVALPKVDGDGKEMLFFRIWSPEQPLTKGPFGILEPVGDLEEPVPPDEIDLIIVP 122
>gnl|CDD|176556 cd08619, PI-PLCXDc_plant, Catalytic domain of
phosphatidylinositol-specific phospholipase C, X domain
containing proteins found in plants. The CD corresponds
to the catalytic domain present in uncharacterized plant
phosphatidylinositol-specific phospholipase C, X domain
containing proteins (PI-PLCXD). The typical eukaryotic
phosphoinositide-specific phospholipase C (PI-PLC, EC
3.1.4.11) has a multidomain organization that consists
of a PLC catalytic core domain, and various regulatory
domains. The catalytic core domain is assembled from two
highly conserved X- and Y-regions split by a divergent
linker sequence. In contrast, plant PI-PLCXDs contain a
single TIM-barrel type catalytic domain, X domain, and
are more closely related to bacterial PI-PLCs, which
participate in Ca2+-independent PI metabolism,
hydrolyzing the membrane lipid phosphatidylinositol (PI)
to produce phosphorylated myo-inositol and
diacylglycerol (DAG). Although the biological function
of plant PI-PLCXDs still remains unclear, it may
distinct from that of typical eukaryotic PI-PLCs.
Length = 285
Score = 26.0 bits (57), Expect = 6.5
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 1 MSTYLVAVVVGEFD-YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPF--YKDYFN 57
+ TY V VV+ + ++ ET S+ V++ + T G + QF L + ++ ++D
Sbjct: 88 LKTYPVDVVLNDIKRFLSETKSEFVILEIRTEYGHEDPPQFDLWLVEQLGDHLIHQDDSV 147
Query: 58 IAYPLPKI 65
+ L ++
Sbjct: 148 FSKTLAEL 155
>gnl|CDD|165792 PLN00413, PLN00413, triacylglycerol lipase.
Length = 479
Score = 26.1 bits (57), Expect = 6.9
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 53 KDYFNIAYPLPKI-----DLVAVPDFSCGA----MENWGLVTYREVCLLV 93
K+YFNI + +PKI +L+ C E W L +R V LL+
Sbjct: 394 KNYFNIFWVIPKIINALWELIRSFIIPCWKGGEFREGWFLRCFRLVALLI 443
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 25.8 bits (56), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 15 YVEETSSDGVLVRVYTPVGKREQGQFALHVASKV 48
+VEE +L R Y+P + G + LH+ASK+
Sbjct: 54 FVEE-----LLHRGYSPNETDDDGNYPLHIASKI 82
>gnl|CDD|223389 COG0312, TldD, Predicted Zn-dependent proteases and their
inactivated homologs [General function prediction
only].
Length = 454
Score = 25.8 bits (57), Expect = 8.8
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 11 GEFDYVEETSSDGVLVRVYTPVGKR 35
GE + V + GV VRV G
Sbjct: 37 GEVETVSFSIDRGVGVRVIKGGGWG 61
>gnl|CDD|165425 PHA03154, PHA03154, hypothetical protein; Provisional.
Length = 304
Score = 25.4 bits (55), Expect = 9.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 38 GQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFS 74
G++ LH + P+YKD+ +I P+I L +V FS
Sbjct: 147 GRWCLHNLLGIEPYYKDFSDIVLHDPEISLGSVHAFS 183
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.432
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,632,035
Number of extensions: 572981
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 36
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)