RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6925
(131 letters)
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 251 bits (643), Expect = 5e-80
Identities = 74/131 (56%), Positives = 91/131 (69%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
MSTYLVA ++ +F+ V + + GV V VY K Q +AL A +L FY+DYF+I Y
Sbjct: 197 MSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPY 256
Query: 61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
PLPK DL A+PDF GAMENWGL TYRE LL D++ +SA ++ I + V HELAHQWFG
Sbjct: 257 PLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFG 316
Query: 121 NLVTMEWWTHL 131
NLVTMEWW L
Sbjct: 317 NLVTMEWWNDL 327
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 250 bits (641), Expect = 2e-79
Identities = 71/131 (54%), Positives = 92/131 (70%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
MSTYLVA +V +F + +S GV V +Y KR Q +AL + K+L FY+ YF+I Y
Sbjct: 259 MSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYY 318
Query: 61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
PL K+DL+A+PDF+ GAMENWGL+TYRE LL D + +SA + + V+ HELAHQWFG
Sbjct: 319 PLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFG 378
Query: 121 NLVTMEWWTHL 131
NLVTMEWW +
Sbjct: 379 NLVTMEWWNDI 389
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 238 bits (609), Expect = 6e-76
Identities = 57/131 (43%), Positives = 87/131 (66%), Gaps = 4/131 (3%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
MSTYL+ V +G+F Y E D + + K + ++ L +A K + FY++YF I Y
Sbjct: 158 MSTYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFYENYFGIPY 214
Query: 61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
LPK+ L++VP+F GAMENWG +T+RE+ + + +N++ ++N A V+ HE+AHQWFG
Sbjct: 215 ALPKMHLISVPEFGAGAMENWGAITFREIYMDIA-ENSAVTVKRNSANVIAHEIAHQWFG 273
Query: 121 NLVTMEWWTHL 131
+LVTM+WW L
Sbjct: 274 DLVTMKWWNDL 284
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 196 bits (500), Expect = 6e-60
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 1 MSTYLVAVVVGEFDYVEET-----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDY 55
YL AVV G+ ++ T + V + V++ + Q+AL K + F +DY
Sbjct: 185 KPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDY 244
Query: 56 FNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELA 115
F + Y L +++LVAV DF+ GAMEN GL + LL +N+ + I VVGHE
Sbjct: 245 FGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYF 304
Query: 116 HQWFGNLVTMEWWTHL 131
HQ+ GN VT+ W L
Sbjct: 305 HQYTGNRVTLRDWFQL 320
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 192 bits (490), Expect = 1e-59
Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 14/132 (10%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
+ YL+ + G+ G VYT + + Q+ + + Y
Sbjct: 202 IPAYLIGIASGDLSSAP----IGPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIFEY 257
Query: 61 PLPKID-LVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
D LV V + G ME+ + L D N V+ HELAH W
Sbjct: 258 EWGTYDILVNVDSYPYGGMESPNMTFATPTLLAHDRSNID---------VIAHELAHSWS 308
Query: 120 GNLVTMEWWTHL 131
GNLVT W H
Sbjct: 309 GNLVTNCSWNHF 320
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 184 bits (468), Expect = 2e-56
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
+ YL+A+VVG + + G V++ + E+ + +L +D Y
Sbjct: 203 IPCYLIALVVGALESRQ----IGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG-GPY 257
Query: 61 PLPKIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
+ DL+ +P F G MEN L L D ++++ V+ H+++H W
Sbjct: 258 VWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGD---------KSLSNVIAHQISHSWT 308
Query: 120 GNLVTMEWWTHL 131
GNLVT + W H
Sbjct: 309 GNLVTNKTWDHF 320
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 176 bits (448), Expect = 1e-53
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 15/132 (11%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
+ YL+A+ VG+ ++ +Y + ++ + + Y
Sbjct: 202 IPPYLIAIGVGDLEFKA----MSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMY-GKY 256
Query: 61 PLPKIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
+ DL+ +P F G MEN L + D +++ ++ HELAH W
Sbjct: 257 RWGRYDLLMLPPSFPFGGMENPRLSFITPTVVAGD---------KSLVNLIAHELAHSWS 307
Query: 120 GNLVTMEWWTHL 131
GNLVT E W L
Sbjct: 308 GNLVTNESWRDL 319
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 178 bits (454), Expect = 1e-53
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 1 MSTYLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 56
+YL A+V G+ E+ S V + YT + + FA+ + + + F
Sbjct: 178 KPSYLFALVAGDLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRF 237
Query: 57 NIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAH 116
+ Y L +VAV DF+ GAMEN GL + +L DS+ + + I VVGHE H
Sbjct: 238 GLEYDLDIFMVVAVGDFNMGAMENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFH 297
Query: 117 QWFGNLVTMEWWTHL 131
W GN VT W L
Sbjct: 298 NWTGNRVTCRDWFQL 312
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 174 bits (443), Expect = 5e-52
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 1 MSTYLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 56
YL A+V G+FD + +T S V + +Y G ++ +A+ + + ++ F
Sbjct: 203 KPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERF 262
Query: 57 NIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAH 116
+ Y L +VAV F+ GAMEN GL + +L + + +I V+GHE H
Sbjct: 263 GLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFH 322
Query: 117 QWFGNLVTMEWWTHL 131
W GN VT W L
Sbjct: 323 NWTGNRVTCRDWFQL 337
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.16
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 49 LPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLL 92
L FYK Y P + + A+ DF EN L+ + LL
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEEN--LICSKYTDLL 568
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.16
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 34/101 (33%)
Query: 1 MSTY-LVAV----VVGEFD------YVEETSSD-GVLVRV--Y-TP----V--GKREQGQ 39
S Y ++A+ V F VE G LV + Y V G
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR--- 1860
Query: 40 FALHVASKVLPFYKDYFNIAYPLPKIDLVAVPD-FSCGAME 79
AL + VL F K L KID++ + S +E
Sbjct: 1861 -ALDTVTNVLNFIK--------LQKIDIIELQKSLSLEEVE 1892
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 27.4 bits (61), Expect = 1.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 13/34 (38%)
Query: 106 IALVVGHELAHQWF----------GNLVTMEWWT 129
I V+GHE+ H F GNLV +WWT
Sbjct: 523 IGAVIGHEIGHG-FDDQGAKYDGDGNLV--DWWT 553
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 26.6 bits (59), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 13/35 (37%)
Query: 106 IALVVGHELAHQWF----------GNLVTMEWWTH 130
I +V+GHE+ H F G+LV +WWT
Sbjct: 524 IGMVIGHEITHG-FDDNGRNFNKDGDLV--DWWTQ 555
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 26.6 bits (59), Expect = 3.0
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 11/33 (33%)
Query: 106 IALVVGHELAH---------QWFGNLVTMEWWT 129
I +VVGHEL H GNL WW
Sbjct: 501 IGVVVGHELTHAFDDQGREYDKDGNLR--PWWK 531
>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional
protein, transcripti repressor, shuttling, dimer,
oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli}
SCOP: a.176.1.1 c.1.23.2
Length = 669
Score = 26.6 bits (58), Expect = 3.4
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQG 38
M L V G+ R+Y PVG E
Sbjct: 516 MGEPLYEQVTGKV----ADGKLNRPCRIYAPVGTHETL 549
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 26.1 bits (58), Expect = 3.7
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 21 SDGVLVRVYTPVGK 34
+G VR Y P G+
Sbjct: 287 REGYTVRAYVPYGR 300
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A
{Francisella tularensis subsp}
Length = 201
Score = 25.8 bits (57), Expect = 4.9
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 82 GLVTYREVCLLVDSQNTSAITRQNIALVVGHEL 114
+ ++ L V S N + I Q ++ H L
Sbjct: 157 NMYNTDDIELRVPSDNIANI--QENHFLIVHCL 187
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide
bonding, putative phosphosugar BIND protein, DNAA
binding protein; 1.85A {Escherichia coli}
Length = 196
Score = 25.4 bits (56), Expect = 5.9
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 82 GLVTYREVCLLVDSQNTSAITRQNIALVVGHEL 114
GL+ ++V + + S ++ I Q + ++ + L
Sbjct: 152 GLLGPQDVEIRIPSHRSARI--QEMHMLTVNCL 182
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain,
PSI-2, protein structure INI structural genomics; HET:
MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Length = 107
Score = 24.5 bits (54), Expect = 8.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 102 TRQNIALVVGHELAHQWFGNLVTM 125
TR V+ HE++H G++VTM
Sbjct: 79 TRDEAEAVLAHEVSHIANGDMVTM 102
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Geobacter sulfurreducens
pca}
Length = 253
Score = 25.0 bits (55), Expect = 8.7
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 106 IALVVGHELAH 116
+A V+ HE+ H
Sbjct: 100 LAGVLAHEINH 110
>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A,
PUTA, flavoenzyme, DNA-binding, FAD, flavoprotein,
multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A
{Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A*
1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A*
Length = 551
Score = 25.0 bits (54), Expect = 9.9
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQG 38
M L V G+ + R+ PVG E
Sbjct: 431 MGEPLYEQVTGKVADGKL----NRPCRISAPVGTHETL 464
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.432
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,083,181
Number of extensions: 112351
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 26
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.8 bits)