BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6927
         (93 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P96803|G6PI_MYCSM Glucose-6-phosphate isomerase OS=Mycobacterium smegmatis GN=pgi
           PE=3 SV=2
          Length = 549

 Score = 31.2 bits (69), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 7   KTFLILEHSLNSIQAFSWVTYRDGDSQVALYWISSPPLR-WKT 48
           KTF  LE   N+  A  W+T   GD+ VA +    PP R W T
Sbjct: 207 KTFSTLETLTNATAARRWLTDALGDAAVAKHSSRCPPTRSWST 249


>sp|Q8BHT6|B3GLT_MOUSE Beta-1,3-glucosyltransferase OS=Mus musculus GN=B3galtl PE=2 SV=3
          Length = 489

 Score = 29.6 bits (65), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 5   CGKTFLILEHSLN-SIQAFSWVTYRDGDSQVAL 36
           CGKTF ILE  LN S    SW+   D D+ +++
Sbjct: 315 CGKTFAILEKFLNHSHNKISWLVIVDDDTLISI 347


>sp|B1H069|G6PI_UNCTG Glucose-6-phosphate isomerase OS=Uncultured termite group 1
           bacterium phylotype Rs-D17 GN=pgi PE=3 SV=1
          Length = 547

 Score = 28.9 bits (63), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 7   KTFLILEHSLNSIQAFSWVTYRDGDSQVALYWISSPPLRWKTFVANRVSKIQEL-VSEDK 65
           KTF  LE   N++ A  W+T + GD  VA ++++         ++  V K++E  + E+ 
Sbjct: 208 KTFTTLETITNALTARKWLTDKLGDKAVANHFVA---------LSTNVKKVKEFGIDENN 258

Query: 66  WF 67
            F
Sbjct: 259 MF 260


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,675,236
Number of Sequences: 539616
Number of extensions: 1056434
Number of successful extensions: 2327
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2327
Number of HSP's gapped (non-prelim): 4
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)