Query psy6927 Match_columns 93 No_of_seqs 107 out of 324 Neff 4.6 Searched_HMMs 46136 Date Fri Aug 16 21:59:57 2013 Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6927hhsearch_cdd -cpu 12 -v 0 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PF00336 DNA_pol_viral_C: DNA 97.2 0.00014 3E-09 56.4 1.2 50 18-84 140-195 (245) 2 PF13456 RVT_3: Reverse transc 96.8 0.0022 4.7E-08 39.2 3.9 62 11-78 14-79 (87) 3 cd06222 RnaseH RNase H (RNase 96.7 0.0026 5.6E-08 39.4 3.7 62 15-81 58-127 (130) 4 PF00075 RNase_H: RNase H; In 94.1 0.16 3.5E-06 33.2 5.2 52 19-75 58-116 (132) 5 COG0328 RnhA Ribonuclease HI [ 93.3 0.24 5.2E-06 36.2 5.2 69 1-74 46-128 (154) 6 PRK13907 rnhA ribonuclease H; 93.0 0.28 6.2E-06 32.8 4.9 61 15-81 58-122 (128) 7 PRK07708 hypothetical protein; 92.6 0.27 5.8E-06 37.3 4.8 63 10-78 132-200 (219) 8 PRK07238 bifunctional RNase H/ 87.4 1.4 3E-05 34.8 5.0 59 16-80 63-126 (372) 9 PRK06548 ribonuclease H; Provi 84.2 2.2 4.9E-05 30.9 4.5 65 2-72 46-123 (161) 10 PRK00203 rnhA ribonuclease H; 81.3 2.2 4.8E-05 29.6 3.4 52 18-74 61-125 (150) 11 PF08511 COQ9: COQ9; InterPro 63.8 11 0.00024 24.6 3.2 30 32-61 43-75 (79) 12 PF08952 DUF1866: Domain of un 38.2 16 0.00035 26.6 1.0 24 16-39 66-89 (146) 13 PRK08719 ribonuclease H; Revie 33.6 83 0.0018 22.1 4.0 48 21-73 69-129 (147) 14 COG1908 FrhD Coenzyme F420-red 31.9 44 0.00096 24.2 2.3 46 3-62 80-126 (132) 15 PHA00422 hypothetical protein 28.5 63 0.0014 21.0 2.4 30 33-62 5-35 (69) 16 PF09803 DUF2346: Uncharacteri 24.6 44 0.00095 21.8 1.2 23 34-56 19-41 (80) 17 PF07370 DUF1489: Protein of u 24.4 40 0.00087 24.4 1.1 19 64-82 99-117 (137) No 1 >PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and.; GO: 0004523 ribonuclease H activity Probab=97.20 E-value=0.00014 Score=56.41 Aligned_cols=50 Identities=30% Similarity=0.347 Sum_probs=36.9 Q ss_pred ceeeeeecccCCChHHHHHHHHhCCCCCchhH------HHHHHHHHHhhccCCceEecCCCCCCCcccCCCCC Q psy6927 18 SIQAFSWVTYRDGDSQVALYWISSPPLRWKTF------VANRVSKIQELVSEDKWFHVKGTENPADCLSRGIT 84 (93) Q Consensus 18 i~~~~~w~~~~~tDS~i~L~wI~~~~~~~~~F------VaNRV~~I~~~~~~~~W~hVps~~NPAD~aSRG~~ 84 (93) +..-.+- |||++||+ +++.+| +||- +....++-||||+.||||..|||.- T Consensus 140 ~~~r~l~-----tDnt~Vls------rkyts~PW~lac~A~w------iLrgts~~yVPS~~NPAD~PsR~~~ 195 (245) T PF00336_consen 140 SGARCLG-----TDNTVVLS------RKYTSFPWLLACAANW------ILRGTSFYYVPSKYNPADDPSRGKL 195 (245) T ss_pred cCCcEEe-----ecCcEEEe------cccccCcHHHHHHHHH------hhcCceEEEeccccCcCCCCCCCcc Confidence 3444567 99999875 444443 3443 3668899999999999999999964 No 2 >PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B. Probab=96.82 E-value=0.0022 Score=39.18 Aligned_cols=62 Identities=19% Similarity=0.158 Sum_probs=41.7 Q ss_pred HHHhcccceeeeeecccCCChHHHHHHHHhCCCCCchhHHHHHHHHHHhhcc---CCceEecCCCCCC-Ccc Q psy6927 11 ILEHSLNSIQAFSWVTYRDGDSQVALYWISSPPLRWKTFVANRVSKIQELVS---EDKWFHVKGTENP-ADC 78 (93) Q Consensus 11 ~~e~~i~i~~~~~w~~~~~tDS~i~L~wI~~~~~~~~~FVaNRV~~I~~~~~---~~~W~hVps~~NP-AD~ 78 (93) ..-.++.+.++.+. |||..+...|++...... .....+.+|+.+.. ...++|||-+.|= ||- T Consensus 14 ~~a~~~g~~~i~v~-----sDs~~vv~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~i~r~~N~~A~~ 79 (87) T PF13456_consen 14 QLAWELGIRKIIVE-----SDSQLVVDAINGRSSSRS-ELRPLIQDIRSLLDRFWNVSVSHIPREQNKVADA 79 (87) T ss_dssp HHHHCCT-SCEEEE-----ES-HHHHHHHTTSS---S-CCHHHHHHHHHHHCCCSCEEEEE--GGGSHHHHH T ss_pred HHHHHCCCCEEEEE-----ecCccccccccccccccc-cccccchhhhhhhccccceEEEEEChHHhHHHHH Confidence 33446778899999 999999999988743333 56667777777665 5889999999884 443 No 3 >cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. Probab=96.70 E-value=0.0026 Score=39.45 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=43.7 Q ss_pred cccceeeeeecccCCChHHHHHHHHhCCCCCchhHHHHHHHHHHhhc---cCCceEecCC-----CCCCCcccCC Q psy6927 15 SLNSIQAFSWVTYRDGDSQVALYWISSPPLRWKTFVANRVSKIQELV---SEDKWFHVKG-----TENPADCLSR 81 (93) Q Consensus 15 ~i~i~~~~~w~~~~~tDS~i~L~wI~~~~~~~~~FVaNRV~~I~~~~---~~~~W~hVps-----~~NPAD~aSR 81 (93) ......+.++ |||..++..+++.......=....+.+|++.. ....++|||+ .++.||.++| T Consensus 58 ~~~~~~i~i~-----~Ds~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~ 127 (130) T cd06222 58 ELGGKKVNIY-----TDSQYVINALTGWYEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAK 127 (130) T ss_pred hCCCceEEEE-----ECHHHHHHHhhccccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHH Confidence 5678899999 99999999999864312223444445555544 5688899999 5558887554 No 4 >PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D .... Probab=94.14 E-value=0.16 Score=33.23 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=35.7 Q ss_pred eeeeeecccCCChHHHHHHHHhC-----CCCCchh--HHHHHHHHHHhhccCCceEecCCCCCC Q psy6927 19 IQAFSWVTYRDGDSQVALYWISS-----PPLRWKT--FVANRVSKIQELVSEDKWFHVKGTENP 75 (93) Q Consensus 19 ~~~~~w~~~~~tDS~i~L~wI~~-----~~~~~~~--FVaNRV~~I~~~~~~~~W~hVps~~NP 75 (93) ..+.++ |||+.++.+|.. ..+.-.. =+.+++.+.........++|||+..+- T Consensus 58 ~~v~I~-----tDS~~v~~~l~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~v~~~~V~~H~~~ 116 (132) T PF00075_consen 58 RKVTIY-----TDSQYVLNALNKWLHGNGWKKTSNGRPIKNEIWELLSRGIKVRFRWVPGHSGV 116 (132) T ss_dssp SEEEEE-----ES-HHHHHHHHTHHHHTTSBSCTSSSBHTHHHHHHHHHSSEEEEEESSSSSSS T ss_pred cccccc-----ccHHHHHHHHHHhccccccccccccccchhheeeccccceEEeeeeccCcCCC Confidence 888999 999999998877 2111111 144566666655557899999999765 No 5 >COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair] Probab=93.28 E-value=0.24 Score=36.16 Aligned_cols=69 Identities=28% Similarity=0.340 Sum_probs=44.4 Q ss_pred CcchhhHHHHHHHhcccceeeeeecccCCChHHHHHH----HHhC-CCCCchh----HHHH--HHHHHHhhcc---CCce Q psy6927 1 MEMRCGKTFLILEHSLNSIQAFSWVTYRDGDSQVALY----WISS-PPLRWKT----FVAN--RVSKIQELVS---EDKW 66 (93) Q Consensus 1 ~~~~~~~~~l~~e~~i~i~~~~~w~~~~~tDS~i~L~----wI~~-~~~~~~~----FVaN--RV~~I~~~~~---~~~W 66 (93) ||++++..-|..-..+....+.++ |||+.|.. |+.+ ....|++ .|-| .-.++.++.+ ...| T Consensus 46 aEl~A~i~AL~~l~~~~~~~v~l~-----tDS~yv~~~i~~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~ 120 (154) T COG0328 46 AELRALIEALEALKELGACEVTLY-----TDSKYVVEGITRWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFW 120 (154) T ss_pred HHHHHHHHHHHHHHhcCCceEEEE-----ecHHHHHHHHHHHHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEE Confidence 455555544544445789999999 99998844 6444 3345663 3333 3555555555 4599 Q ss_pred EecCCCCC Q psy6927 67 FHVKGTEN 74 (93) Q Consensus 67 ~hVps~~N 74 (93) ++||+..+ T Consensus 121 ~WVkgH~g 128 (154) T COG0328 121 EWVKGHAG 128 (154) T ss_pred EEeeCCCC Confidence 99997764 No 6 >PRK13907 rnhA ribonuclease H; Provisional Probab=92.99 E-value=0.28 Score=32.75 Aligned_cols=61 Identities=16% Similarity=-0.002 Sum_probs=39.0 Q ss_pred cccceeeeeecccCCChHHHHHHHHhCCCCCchhHHHHHHHHHHhh---ccCCceEecCCCCCC-CcccCC Q psy6927 15 SLNSIQAFSWVTYRDGDSQVALYWISSPPLRWKTFVANRVSKIQEL---VSEDKWFHVKGTENP-ADCLSR 81 (93) Q Consensus 15 ~i~i~~~~~w~~~~~tDS~i~L~wI~~~~~~~~~FVaNRV~~I~~~---~~~~~W~hVps~~NP-AD~aSR 81 (93) ...+..+.+. |||+.+..++++...+- .-...-+.+++++ .+...+.|||.+.|= ||.+.| T Consensus 58 ~~g~~~v~i~-----sDS~~vi~~~~~~~~~~-~~~~~l~~~~~~l~~~f~~~~~~~v~r~~N~~Ad~LA~ 122 (128) T PRK13907 58 EHNYNIVSFR-----TDSQLVERAVEKEYAKN-KMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELAR 122 (128) T ss_pred hCCCCEEEEE-----echHHHHHHHhHHHhcC-hhHHHHHHHHHHHHhcCCceEEEEcCchhchhHHHHHH Confidence 3445679999 99999999998753211 1123334455444 344556899998874 775443 No 7 >PRK07708 hypothetical protein; Validated Probab=92.56 E-value=0.27 Score=37.26 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=38.7 Q ss_pred HHHHhcccceeeeeecccCCChHHHHHHHHhCCCCC----chhHHHHHHHHHHhhcc-CCceEecCCCCCC-Ccc Q psy6927 10 LILEHSLNSIQAFSWVTYRDGDSQVALYWISSPPLR----WKTFVANRVSKIQELVS-EDKWFHVKGTENP-ADC 78 (93) Q Consensus 10 l~~e~~i~i~~~~~w~~~~~tDS~i~L~wI~~~~~~----~~~FVaNRV~~I~~~~~-~~~W~hVps~~NP-AD~ 78 (93) +..++++.-..+.+. +||+.+..|+++.-+. .+.+. .++.++.+... ...+.|||-++|= ||- T Consensus 132 ~A~e~g~~~~~V~I~-----~DSqlVi~qi~g~wk~~~~~l~~y~-~~i~~l~~~~~l~~~~~~VpR~~N~~AD~ 200 (219) T PRK07708 132 ELEELGVKHEPVTFR-----GDSQVVLNQLAGEWPCYDEHLNHWL-DRIEQKLKQLKLTPVYEPISRKQNKEADQ 200 (219) T ss_pred HHHHcCCCcceEEEE-----eccHHHHHHhCCCceeCChhHHHHH-HHHHHHHhhCCceEEEEECCchhhhHHHH Confidence 344556555568899 9999999999875222 22333 23332222222 2567899998884 664 No 8 >PRK07238 bifunctional RNase H/acid phosphatase; Provisional Probab=87.38 E-value=1.4 Score=34.76 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=39.8 Q ss_pred ccceeeeeecccCCChHHHHHHHHhCCCC----CchhHHHHHHHHHHhhccCCceEecCCCCC-CCcccC Q psy6927 16 LNSIQAFSWVTYRDGDSQVALYWISSPPL----RWKTFVANRVSKIQELVSEDKWFHVKGTEN-PADCLS 80 (93) Q Consensus 16 i~i~~~~~w~~~~~tDS~i~L~wI~~~~~----~~~~FVaNRV~~I~~~~~~~~W~hVps~~N-PAD~aS 80 (93) ..+..+.+. |||..+..-+.+.-+ .+..+. ..+.++.+..+...++|||.++| .||.+. T Consensus 63 ~g~~~v~i~-----~DS~lvi~~i~~~~~~~~~~l~~~~-~~i~~l~~~f~~~~i~~v~r~~N~~AD~LA 126 (372) T PRK07238 63 LGATEVEVR-----MDSKLVVEQMSGRWKVKHPDMKPLA-AQARELASQFGRVTYTWIPRARNAHADRLA 126 (372) T ss_pred CCCCeEEEE-----eCcHHHHHHhCCCCccCChHHHHHH-HHHHHHHhcCCceEEEECCchhhhHHHHHH Confidence 445689999 999999999976421 222332 34555555566789999998766 466543 No 9 >PRK06548 ribonuclease H; Provisional Probab=84.20 E-value=2.2 Score=30.94 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=36.3 Q ss_pred cchhhHHHHHHHhcccceeeeeecccCCChHHHHHHHHh----C-CCCCch----hHHHHH--HHHHHhhcc--CCceEe Q psy6927 2 EMRCGKTFLILEHSLNSIQAFSWVTYRDGDSQVALYWIS----S-PPLRWK----TFVANR--VSKIQELVS--EDKWFH 68 (93) Q Consensus 2 ~~~~~~~~l~~e~~i~i~~~~~w~~~~~tDS~i~L~wI~----~-~~~~~~----~FVaNR--V~~I~~~~~--~~~W~h 68 (93) |..+....| +.+.-....+.++ |||+.|+.=|. + ..+.|+ .-|+|| +.+|.++.. ...|.| T Consensus 46 El~Aii~aL-~~~~~~~~~v~I~-----TDS~yvi~~i~~W~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~~~v~~~w 119 (161) T PRK06548 46 ELTAVRELL-IATRHTDRPILIL-----SDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRNIRMSW 119 (161) T ss_pred HHHHHHHHH-HhhhcCCceEEEE-----eChHHHHHHHHHHHHHHHHCCCcccCCCccccHHHHHHHHHHHhcCceEEEE Confidence 444444322 2333333468999 99999965443 2 112232 457776 344444432 578999 Q ss_pred cCCC Q psy6927 69 VKGT 72 (93) Q Consensus 69 Vps~ 72 (93) |++. T Consensus 120 VkgH 123 (161) T PRK06548 120 VNAH 123 (161) T ss_pred EecC Confidence 9874 No 10 >PRK00203 rnhA ribonuclease H; Reviewed Probab=81.31 E-value=2.2 Score=29.61 Aligned_cols=52 Identities=27% Similarity=0.441 Sum_probs=32.3 Q ss_pred ceeeeeecccCCChHHHHHH----HHhC-CCCCch----hHHHHH--HHHHHhhcc--CCceEecCCCCC Q psy6927 18 SIQAFSWVTYRDGDSQVALY----WISS-PPLRWK----TFVANR--VSKIQELVS--EDKWFHVKGTEN 74 (93) Q Consensus 18 i~~~~~w~~~~~tDS~i~L~----wI~~-~~~~~~----~FVaNR--V~~I~~~~~--~~~W~hVps~~N 74 (93) ...+.++ |||+.++. |+.. ..+.|+ .-|+|+ ..+|.++.. ...|.|||+-.+ T Consensus 61 ~~~v~I~-----tDS~yvi~~i~~w~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~~~~v~~~wV~~H~~ 125 (150) T PRK00203 61 PCEVTLY-----TDSQYVRQGITEWIHGWKKNGWKTADKKPVKNVDLWQRLDAALKRHQIKWHWVKGHAG 125 (150) T ss_pred CCeEEEE-----ECHHHHHHHHHHHHHHHHHcCCcccCCCccccHHHHHHHHHHhccCceEEEEecCCCC Confidence 3578899 99987765 4432 112233 245665 466666544 578999997653 No 11 >PF08511 COQ9: COQ9; InterPro: IPR013718 COQ9 is an enzyme that is required for the biosynthesis of coenzyme Q []. It may either catalyse a reaction in the coenzyme Q biosynthetic pathway or have a regulatory role. ; PDB: 3NI7_B. Probab=63.79 E-value=11 Score=24.61 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=18.8 Q ss_pred HHHHHHHHhCCCCC---chhHHHHHHHHHHhhc Q psy6927 32 SQVALYWISSPPLR---WKTFVANRVSKIQELV 61 (93) Q Consensus 32 S~i~L~wI~~~~~~---~~~FVaNRV~~I~~~~ 61 (93) +++-|+|+...+.. -..|+.+||++|.++- T Consensus 43 ~st~l~~l~d~S~~~~~T~~Fl~rri~~v~~~~ 75 (79) T PF08511_consen 43 ASTELYMLQDKSPDFEDTWAFLDRRIDDVMQFG 75 (79) T ss_dssp HHHHHHHHT--SGGGHHHHHHHHHHHHHH---- T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHhhhccc Confidence 34559999876654 4589999999998763 No 12 >PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A. Probab=38.20 E-value=16 Score=26.63 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=18.3 Q ss_pred ccceeeeeecccCCChHHHHHHHH Q psy6927 16 LNSIQAFSWVTYRDGDSQVALYWI 39 (93) Q Consensus 16 i~i~~~~~w~~~~~tDS~i~L~wI 39 (93) +.+.+-.+|+||||+.|..+---+ T Consensus 66 vRfv~~~mwVTF~dg~sALaals~ 89 (146) T PF08952_consen 66 VRFVGDTMWVTFRDGQSALAALSL 89 (146) T ss_dssp EEEETTCEEEEESSCHHHHHHHHG T ss_pred EEEeCCeEEEEECccHHHHHHHcc Confidence 455666899999999998874433 No 13 >PRK08719 ribonuclease H; Reviewed Probab=33.61 E-value=83 Score=22.07 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=26.1 Q ss_pred eeeecccCCChHHHHHHHHh----C-CCCCch----hHHHHH--HHHHHhhcc--CCceEecCCCC Q psy6927 21 AFSWVTYRDGDSQVALYWIS----S-PPLRWK----TFVANR--VSKIQELVS--EDKWFHVKGTE 73 (93) Q Consensus 21 ~~~w~~~~~tDS~i~L~wI~----~-~~~~~~----~FVaNR--V~~I~~~~~--~~~W~hVps~~ 73 (93) ..++ |||+-|+.=|. . ..+.|+ .-|.|+ ..+|.++.. ..+|.|||+.. T Consensus 69 ~~i~-----tDS~yvi~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~~~~i~~~~VkgH~ 129 (147) T PRK08719 69 DVIY-----SDSDYCVRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRARKYVEVEKVTAHS 129 (147) T ss_pred CEEE-----echHHHHHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhCCCcEEEEEecCCC Confidence 4799 99988875442 1 011121 335553 223333332 46799999854 No 14 >COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion] Probab=31.88 E-value=44 Score=24.15 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=34.9 Q ss_pred chhhHHHHHHHhcccceeeeeecccCCChHHHHHHHHhC-CCCCchhHHHHHHHHHHhhcc Q psy6927 3 MRCGKTFLILEHSLNSIQAFSWVTYRDGDSQVALYWISS-PPLRWKTFVANRVSKIQELVS 62 (93) Q Consensus 3 ~~~~~~~l~~e~~i~i~~~~~w~~~~~tDS~i~L~wI~~-~~~~~~~FVaNRV~~I~~~~~ 62 (93) |++.++ +..|++|...++.+- ||.. +..+|..++-+=|++|.++-| T Consensus 80 ~~~lke-~l~elgie~eRv~~~-------------wiSa~E~ekf~e~~~efv~~i~~lGp 126 (132) T COG1908 80 MELLKE-LLKELGIEPERVRVL-------------WISAAEGEKFAETINEFVERIKELGP 126 (132) T ss_pred HHHHHH-HHHHhCCCcceEEEE-------------EEehhhHHHHHHHHHHHHHHHHHhCC Confidence 556664 788999999998776 6655 345677788888888888865 No 15 >PHA00422 hypothetical protein Probab=28.54 E-value=63 Score=20.96 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=24.3 Q ss_pred HHHHHHHhCCCCCch-hHHHHHHHHHHhhcc Q psy6927 33 QVALYWISSPPLRWK-TFVANRVSKIQELVS 62 (93) Q Consensus 33 ~i~L~wI~~~~~~~~-~FVaNRV~~I~~~~~ 62 (93) .-||+-|++.|+.|+ .||.|+.+-+-|.-. T Consensus 5 L~vL~~ik~~pk~fQSn~vR~naalvaeaAs 35 (69) T PHA00422 5 LKVLAAIKSCPKTFQSNYVRNNASLVAEAAS 35 (69) T ss_pred HHHHHHHHhCcHHHHHHHHhhHHHHHHHHHh Confidence 458999999888776 799999988877643 No 16 >PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function. Probab=24.57 E-value=44 Score=21.85 Aligned_cols=23 Identities=13% Similarity=0.463 Sum_probs=17.6 Q ss_pred HHHHHHhCCCCCchhHHHHHHHH Q psy6927 34 VALYWISSPPLRWKTFVANRVSK 56 (93) Q Consensus 34 i~L~wI~~~~~~~~~FVaNRV~~ 56 (93) |++.|+-+.+..++.||.+|=.+ T Consensus 19 I~~~~~fN~pe~f~~~v~~~~~~ 41 (80) T PF09803_consen 19 IGMFYYFNQPEWFEKWVIKRKRE 41 (80) T ss_pred HHHHHhcCCcHHHHHHhHHHhcc Confidence 56778888888999999875433 No 17 >PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. Probab=24.42 E-value=40 Score=24.43 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=16.3 Q ss_pred CceEecCCCCCCCcccCCC Q psy6927 64 DKWFHVKGTENPADCLSRG 82 (93) Q Consensus 64 ~~W~hVps~~NPAD~aSRG 82 (93) .-|||-..++-|+|+.+=+ T Consensus 99 QGWRYL~~~DAP~DL~~~~ 117 (137) T PF07370_consen 99 QGWRYLKPEDAPPDLPAGR 117 (137) T ss_pred CccccCCcccCCCCcccCC Confidence 6799999999999997433 Done!