Query psy6927
Match_columns 93
No_of_seqs 107 out of 324
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 22:00:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 96.7 0.0022 7.5E-08 41.9 4.7 59 16-79 64-126 (141)
2 3u3g_D Ribonuclease H, RNAse H 96.4 0.0051 1.7E-07 39.7 4.8 54 20-78 71-129 (140)
3 2ehg_A Ribonuclease HI; RNAse 96.3 0.0041 1.4E-07 41.5 3.9 58 16-80 66-128 (149)
4 2kq2_A Ribonuclease H-related 92.6 0.049 1.7E-06 36.8 1.8 48 20-73 71-119 (147)
5 2qkb_A Ribonuclease H1, HS-RNA 88.8 0.89 3E-05 30.3 5.3 53 16-73 68-133 (154)
6 4htu_A Ribonuclease H, RNAse H 86.4 0.22 7.4E-06 34.4 1.1 17 21-42 67-83 (134)
7 2zd1_A Reverse transcriptase/r 83.8 1.5 5.1E-05 35.2 5.0 56 18-79 492-553 (557)
8 3qio_A GAG-POL polyprotein; RN 79.1 1.3 4.3E-05 30.0 2.6 51 18-73 65-129 (150)
9 1jl1_A Ribonuclease HI; RNAse 79.0 0.73 2.5E-05 31.0 1.3 50 18-72 62-124 (155)
10 1mu2_A HIV-2 RT; HIV-2 reverse 78.8 2.5 8.5E-05 33.9 4.6 49 17-72 488-538 (555)
11 1zbf_A Ribonuclease H-related 75.9 0.97 3.3E-05 30.8 1.3 19 20-43 72-90 (142)
12 3h08_A RNH (ribonuclease H); R 75.4 5.2 0.00018 26.1 4.8 20 17-41 61-80 (146)
13 2lsn_A Reverse transcriptase; 68.0 2.1 7E-05 29.8 1.5 50 19-73 76-139 (165)
14 2e4l_A Ribonuclease HI, RNAse 65.0 8.6 0.0003 25.7 4.1 49 19-72 65-126 (158)
15 3p1g_A Xenotropic murine leuke 60.6 13 0.00046 25.5 4.5 49 17-74 79-134 (165)
16 1ril_A Ribonuclease H; hydrola 59.1 8.2 0.00028 26.2 3.2 50 18-72 66-129 (166)
17 1nwd_B GAD, glutamate decarbox 37.9 18 0.00062 18.7 1.6 21 28-52 4-24 (28)
18 1ufw_A Synaptojanin 2; RNP dom 23.0 35 0.0012 22.2 1.4 15 21-35 59-73 (95)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=96.73 E-value=0.0022 Score=41.87 Aligned_cols=59 Identities=20% Similarity=0.057 Sum_probs=39.9
Q ss_pred ccceeeeeecccCCChHHHHHHHHhCCCCCchhHHHHHHHHHHhhc---cCCceEecCCCCC-CCccc
Q psy6927 16 LNSIQAFSWVTYRDGDSQVALYWISSPPLRWKTFVANRVSKIQELV---SEDKWFHVKGTEN-PADCL 79 (93)
Q Consensus 16 i~i~~~~~w~~~~~tDS~i~L~wI~~~~~~~~~FVaNRV~~I~~~~---~~~~W~hVps~~N-PAD~a 79 (93)
..+.++.+. |||+.++.++++.-+.-..-....+.+|+++. ....|.|||.+.| .||-+
T Consensus 64 ~~~~~v~i~-----tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~L 126 (141)
T 3hst_B 64 LGATEAAVL-----MDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRL 126 (141)
T ss_dssp HTCSEEEEE-----ESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHH
T ss_pred CCCceEEEE-----eChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHH
Confidence 456789999 99999999998731111122334455555554 4689999998887 46643
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=96.40 E-value=0.0051 Score=39.70 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=36.0
Q ss_pred eeeeecccCCChHHHHHHHHhCCCC-CchhH--HHHHHHHH-HhhccCCceEecCCCCC-CCcc
Q psy6927 20 QAFSWVTYRDGDSQVALYWISSPPL-RWKTF--VANRVSKI-QELVSEDKWFHVKGTEN-PADC 78 (93)
Q Consensus 20 ~~~~w~~~~~tDS~i~L~wI~~~~~-~~~~F--VaNRV~~I-~~~~~~~~W~hVps~~N-PAD~ 78 (93)
.+.+. |||+.++.++++.-. +-+.+ ...++.++ .+......|.|||.+.| .||-
T Consensus 71 ~v~i~-----tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~ 129 (140)
T 3u3g_D 71 EVEVR-----MDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADE 129 (140)
T ss_dssp EEEEE-----ESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHH
T ss_pred eEEEE-----eChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHH
Confidence 89999 999999999987321 11111 22344444 44456899999998777 3554
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=96.27 E-value=0.0041 Score=41.53 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=38.7
Q ss_pred ccceeeeeecccCCChHHHHHHHHhCCC----CCchhHHHHHHHHHHhhccCCceEecCCCCC-CCcccC
Q psy6927 16 LNSIQAFSWVTYRDGDSQVALYWISSPP----LRWKTFVANRVSKIQELVSEDKWFHVKGTEN-PADCLS 80 (93)
Q Consensus 16 i~i~~~~~w~~~~~tDS~i~L~wI~~~~----~~~~~FVaNRV~~I~~~~~~~~W~hVps~~N-PAD~aS 80 (93)
..+.++.+. |||+.+..||++.- ...+.+ ..++.++.+.. ...|.|||.+.| .||-+.
T Consensus 66 ~g~~~v~i~-----tDS~~vi~~i~~~w~~~~~~~~~l-~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA 128 (149)
T 2ehg_A 66 LGISSPIIK-----GDSQLVIKQMNGEYKVKAKRIIPL-YEKAIELKKKL-NATLIWVPREENKEADRLS 128 (149)
T ss_dssp HTCCSCEEE-----ESCHHHHHHHTTSSCCCCTTHHHH-HHHHHHHHHHH-TCEEEECCGGGCHHHHHHH
T ss_pred cCCCEEEEE-----eChHHHHHHHhCccccCCHHHHHH-HHHHHHHHhcC-CEEEEEcCCcccHHHHHHH
Confidence 446789999 99999999998741 112222 22333333333 599999999988 577543
No 4
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=92.58 E-value=0.049 Score=36.84 Aligned_cols=48 Identities=10% Similarity=-0.008 Sum_probs=32.4
Q ss_pred eeeeecccCCChHHHHHHHHhCCCCC-chhHHHHHHHHHHhhccCCceEecCCCC
Q psy6927 20 QAFSWVTYRDGDSQVALYWISSPPLR-WKTFVANRVSKIQELVSEDKWFHVKGTE 73 (93)
Q Consensus 20 ~~~~w~~~~~tDS~i~L~wI~~~~~~-~~~FVaNRV~~I~~~~~~~~W~hVps~~ 73 (93)
++.++ |||+.+..|+.+.-+. -+..+.|+ ..++++.....|.|||+-.
T Consensus 71 ~v~I~-----tDS~~i~~w~~~~w~~~~~~~~~~~-~l~~~l~~~v~~~wV~gH~ 119 (147)
T 2kq2_A 71 KIRIL-----HDYAGIAFWATGEWKAKNEFTQAYA-KLMNQYRGIYSFEKVKAHS 119 (147)
T ss_dssp CCCBS-----SCCSTHHHHTTSSSSCCHHHHHHHH-CGGGGGSTTCCBCCCCCCC
T ss_pred eEEEE-----ECcHHHHHHHhCCCccCCcchHHHH-HHHHHhcCCeeEEEecCcC
Confidence 88999 9999999999763211 12334443 3455555578999999753
No 5
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=88.76 E-value=0.89 Score=30.34 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=31.9
Q ss_pred ccceeeeeecccCCChHHHHHHHHhCC-----CCCch----hHHHHH--HHHHHhhcc--CCceEecCCCC
Q psy6927 16 LNSIQAFSWVTYRDGDSQVALYWISSP-----PLRWK----TFVANR--VSKIQELVS--EDKWFHVKGTE 73 (93)
Q Consensus 16 i~i~~~~~w~~~~~tDS~i~L~wI~~~-----~~~~~----~FVaNR--V~~I~~~~~--~~~W~hVps~~ 73 (93)
.....+.++ |||+.++.-|..- .+.|+ .-|.|+ +.+|.++.. ...|.|||+..
T Consensus 68 ~~~~~v~i~-----tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~v~~~~V~~H~ 133 (154)
T 2qkb_A 68 QNINKLVLY-----TNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHS 133 (154)
T ss_dssp TTCCEEEEE-----ESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEEEECCTTS
T ss_pred CCCceEEEE-----ECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCceEEEEccCCC
Confidence 456789999 9999888655441 11222 112332 445554443 48899999854
No 6
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=86.43 E-value=0.22 Score=34.39 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=15.3
Q ss_pred eeeecccCCChHHHHHHHHhCC
Q psy6927 21 AFSWVTYRDGDSQVALYWISSP 42 (93)
Q Consensus 21 ~~~w~~~~~tDS~i~L~wI~~~ 42 (93)
+.++ |||+.|..||++.
T Consensus 67 v~i~-----tDSqyVi~wi~~~ 83 (134)
T 4htu_A 67 KPIY-----SNSQTAIKWVKDK 83 (134)
T ss_dssp CCEE-----ESCHHHHHHHHHT
T ss_pred EEEE-----cchHHHHHHHHcC
Confidence 7899 9999999999863
No 7
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=83.76 E-value=1.5 Score=35.17 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=37.3
Q ss_pred ceeeeeecccCCChHHHHHHHHhCCCCCchhHHHHHHH-HHHhhccCCceEecCCC-----CCCCccc
Q psy6927 18 SIQAFSWVTYRDGDSQVALYWISSPPLRWKTFVANRVS-KIQELVSEDKWFHVKGT-----ENPADCL 79 (93)
Q Consensus 18 i~~~~~w~~~~~tDS~i~L~wI~~~~~~~~~FVaNRV~-~I~~~~~~~~W~hVps~-----~NPAD~a 79 (93)
..++.++ |||+.|+..|.+....-..-+.+++- ++.+ .....|.|||+. +.=||-+
T Consensus 492 ~~~v~I~-----tDS~~vi~~i~~~~~~~~~~l~~~~~~~l~~-~~~v~~~wV~~H~g~~~Ne~AD~L 553 (557)
T 2zd1_A 492 GLEVNIV-----TDSQYALGIIQAQPDKSESELVNQIIEQLIK-KEKVYLAWVPAHKGIGGNEQVDKL 553 (557)
T ss_dssp CSEEEEE-----ECCHHHHHHHTTCCSEESSHHHHHHHHHHHH-CSEEEEEECCSSSCCTTCCGGGGC
T ss_pred CCcEEEE-----eChHHHHHHHhcCCccCCHHHHHHHHHHHhc-CCCEEEEEcCCCCCChhHHHHHHH
Confidence 6789999 99999999998854331233334443 4443 346899999984 3446653
No 8
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=79.06 E-value=1.3 Score=30.05 Aligned_cols=51 Identities=29% Similarity=0.212 Sum_probs=28.3
Q ss_pred ceeeeeecccCCChHHHHHHHHhC-----CCCCchh----HHHHH--HHHHHh---hccCCceEecCCCC
Q psy6927 18 SIQAFSWVTYRDGDSQVALYWISS-----PPLRWKT----FVANR--VSKIQE---LVSEDKWFHVKGTE 73 (93)
Q Consensus 18 i~~~~~w~~~~~tDS~i~L~wI~~-----~~~~~~~----FVaNR--V~~I~~---~~~~~~W~hVps~~ 73 (93)
..++.++ |||+.++.-|.. ..+.|++ -|.|+ ..+|.+ ......|.|||+..
T Consensus 65 ~~~v~i~-----tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~ 129 (150)
T 3qio_A 65 GLEVNIV-----TDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHK 129 (150)
T ss_dssp CSEEEEE-----ESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTS
T ss_pred CCcEEEE-----eCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcC
Confidence 3789999 999998764433 1222332 34553 233332 22368999999985
No 9
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=79.02 E-value=0.73 Score=31.03 Aligned_cols=50 Identities=26% Similarity=0.254 Sum_probs=31.1
Q ss_pred ceeeeeecccCCChHHHHHHHHhCCC-----CCch----hHHHHH--HHHHHhhcc--CCceEecCCC
Q psy6927 18 SIQAFSWVTYRDGDSQVALYWISSPP-----LRWK----TFVANR--VSKIQELVS--EDKWFHVKGT 72 (93)
Q Consensus 18 i~~~~~w~~~~~tDS~i~L~wI~~~~-----~~~~----~FVaNR--V~~I~~~~~--~~~W~hVps~ 72 (93)
..++.++ |||+.++.-|..-- +.|+ ..|.|+ +.+|.++.. ...|.|||+-
T Consensus 62 ~~~v~I~-----tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH 124 (155)
T 1jl1_A 62 HAEVILS-----TDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 (155)
T ss_dssp CCEEEEE-----ECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSS
T ss_pred CCcEEEE-----eCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEEEEcCCC
Confidence 4789999 99999987666410 1111 133332 445555544 5789999965
No 10
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=78.77 E-value=2.5 Score=33.85 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=32.7
Q ss_pred cceeeeeecccCCChHHHHHHHHhCCC-CCchhHHHHHHH-HHHhhccCCceEecCCC
Q psy6927 17 NSIQAFSWVTYRDGDSQVALYWISSPP-LRWKTFVANRVS-KIQELVSEDKWFHVKGT 72 (93)
Q Consensus 17 ~i~~~~~w~~~~~tDS~i~L~wI~~~~-~~~~~FVaNRV~-~I~~~~~~~~W~hVps~ 72 (93)
...++.++ |||+.|+.+|.+-. ...+... +++- .+.+ .....|.|||+.
T Consensus 488 ~~~~v~I~-----tDS~~v~~~i~~~~~~~~~~l~-~~~~~~~~~-~~~v~~~wV~~H 538 (555)
T 1mu2_A 488 SGPKVNII-----VDSQYVMGIVASQPTESESKIV-NQIIEEMIK-KEAIYVAWVPAH 538 (555)
T ss_dssp SCSEEEEE-----ESCHHHHHHHHTCCSEESCHHH-HHHHHHHHH-CSEEEEEECCSS
T ss_pred CCCeEEEE-----EehHHHHHHHhcccccccHHHH-HHHHHHhcc-CCcEEEEEEECC
Confidence 56789999 99999999998632 1223333 3332 3233 346789999984
No 11
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=75.87 E-value=0.97 Score=30.84 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=17.2
Q ss_pred eeeeecccCCChHHHHHHHHhCCC
Q psy6927 20 QAFSWVTYRDGDSQVALYWISSPP 43 (93)
Q Consensus 20 ~~~~w~~~~~tDS~i~L~wI~~~~ 43 (93)
.+.++ |||+.|..|+++.-
T Consensus 72 ~v~i~-----tDS~~vi~w~~~~~ 90 (142)
T 1zbf_A 72 RKPIY-----SNSQTAIKWVKDKK 90 (142)
T ss_dssp CCCEE-----ESCHHHHHHHHHTC
T ss_pred eEEEE-----EehHHHHHHHHcCC
Confidence 89999 99999999999753
No 12
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=75.44 E-value=5.2 Score=26.11 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=15.8
Q ss_pred cceeeeeecccCCChHHHHHHHHhC
Q psy6927 17 NSIQAFSWVTYRDGDSQVALYWISS 41 (93)
Q Consensus 17 ~i~~~~~w~~~~~tDS~i~L~wI~~ 41 (93)
....+.++ |||+.++.-|..
T Consensus 61 ~~~~v~I~-----tDS~~vi~~i~~ 80 (146)
T 3h08_A 61 EPARVQLY-----SDSAYLVNAMNE 80 (146)
T ss_dssp SCCEEEEE-----ESCHHHHHHHHS
T ss_pred ccCcEEEE-----eChHHHHHHHHH
Confidence 35789999 999988875544
No 13
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=68.03 E-value=2.1 Score=29.77 Aligned_cols=50 Identities=14% Similarity=0.005 Sum_probs=28.0
Q ss_pred eeeeeecccCCChHHHHHHHHhC-----CCCCch----hHHHHH--HHHHHh---hccCCceEecCCCC
Q psy6927 19 IQAFSWVTYRDGDSQVALYWISS-----PPLRWK----TFVANR--VSKIQE---LVSEDKWFHVKGTE 73 (93)
Q Consensus 19 ~~~~~w~~~~~tDS~i~L~wI~~-----~~~~~~----~FVaNR--V~~I~~---~~~~~~W~hVps~~ 73 (93)
.++.++ |||+-|..=|.. ..+.|+ .-|.|+ ..+|.+ ......|.||++-.
T Consensus 76 ~~v~I~-----TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~ 139 (165)
T 2lsn_A 76 GPVLVI-----TDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQ 139 (165)
T ss_dssp SCEEEE-----ESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSS
T ss_pred CeEEEE-----eChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 468999 999988643321 001121 124443 233333 33468999999864
No 14
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=65.00 E-value=8.6 Score=25.73 Aligned_cols=49 Identities=24% Similarity=0.254 Sum_probs=29.0
Q ss_pred eeeeeecccCCChHHHHHHHHhC-----CCCCch----hHHHHH--HHHHHhhcc--CCceEecCCC
Q psy6927 19 IQAFSWVTYRDGDSQVALYWISS-----PPLRWK----TFVANR--VSKIQELVS--EDKWFHVKGT 72 (93)
Q Consensus 19 ~~~~~w~~~~~tDS~i~L~wI~~-----~~~~~~----~FVaNR--V~~I~~~~~--~~~W~hVps~ 72 (93)
..+.++ |||+.++.-|.. ..+.|+ .-|.|+ +.+|.++.. ...|.|||+-
T Consensus 65 ~~v~I~-----tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH 126 (158)
T 2e4l_A 65 CKIILT-----SDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWVKGH 126 (158)
T ss_dssp CEEEEE-----ECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEEEECCTT
T ss_pred CeEEEE-----eCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEEEEccCC
Confidence 789999 999999874443 001121 123332 234444443 5789999965
No 15
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=60.57 E-value=13 Score=25.45 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=30.7
Q ss_pred cceeeeeecccCCChHHHHHH--HHhCCCCCchhHHHHH--HHHHHh---hccCCceEecCCCCC
Q psy6927 17 NSIQAFSWVTYRDGDSQVALY--WISSPPLRWKTFVANR--VSKIQE---LVSEDKWFHVKGTEN 74 (93)
Q Consensus 17 ~i~~~~~w~~~~~tDS~i~L~--wI~~~~~~~~~FVaNR--V~~I~~---~~~~~~W~hVps~~N 74 (93)
....+.++ |||+.++. |+.+.. ..|.|+ +.+|.+ ......|.|||+..+
T Consensus 79 ~~~~v~I~-----tDS~~vi~~iw~~~~g----~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g 134 (165)
T 3p1g_A 79 EGKKLNVY-----TDSRYAFATAHVHSEG----REIKNKNEILALLKALFLPKRLSIIHCPGHQK 134 (165)
T ss_dssp BTSEEEEE-----ECCHHHHHHHHSCCCS----CCCSSHHHHHHHHHHTTSBSEEEEEECCSSCC
T ss_pred cCceEEEE-----EchHHHHhhhhcccCC----CcccCHHHHHHHHHHHhcCCceEEEEecCCCC
Confidence 46889999 99998765 654322 224443 233322 133689999999873
No 16
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=59.12 E-value=8.2 Score=26.17 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=29.5
Q ss_pred ceeeeeecccCCChHHHHHHHHhCC------CCCch----hHHHH--HHHHHHhhcc--CCceEecCCC
Q psy6927 18 SIQAFSWVTYRDGDSQVALYWISSP------PLRWK----TFVAN--RVSKIQELVS--EDKWFHVKGT 72 (93)
Q Consensus 18 i~~~~~w~~~~~tDS~i~L~wI~~~------~~~~~----~FVaN--RV~~I~~~~~--~~~W~hVps~ 72 (93)
..++.++ |||+.++.-|... .+.|+ ..|.| -+.+|.++.. ...|.|||+-
T Consensus 66 ~~~v~I~-----tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH 129 (166)
T 1ril_A 66 PCEVDLY-----TDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGH 129 (166)
T ss_dssp CCEEEEE-----CCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGG
T ss_pred CCeEEEE-----eChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcCeEEEEEeeCC
Confidence 3589999 9999998755441 01122 22334 2344544444 5789999853
No 17
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=37.88 E-value=18 Score=18.70 Aligned_cols=21 Identities=43% Similarity=0.716 Sum_probs=17.1
Q ss_pred CCChHHHHHHHHhCCCCCchhHHHH
Q psy6927 28 RDGDSQVALYWISSPPLRWKTFVAN 52 (93)
Q Consensus 28 ~~tDS~i~L~wI~~~~~~~~~FVaN 52 (93)
..|||.+-|.-| ..|+.||..
T Consensus 4 kktdsevqlemi----tawkkfvee 24 (28)
T 1nwd_B 4 KKTDSEVQLEMI----TAWKKFVEE 24 (28)
T ss_dssp SCCHHHHHHHHH----HHHHHHHHH
T ss_pred ccchHHHHHHHH----HHHHHHHHH
Confidence 458999999888 468999864
No 18
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.99 E-value=35 Score=22.16 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.0
Q ss_pred eeeecccCCChHHHH
Q psy6927 21 AFSWVTYRDGDSQVA 35 (93)
Q Consensus 21 ~~~w~~~~~tDS~i~ 35 (93)
-.+|+||+|..|..+
T Consensus 59 d~~fVtF~d~~sAl~ 73 (95)
T 1ufw_A 59 GQMLVTFADSHSALS 73 (95)
T ss_dssp TEEEEECSCSHHHHH
T ss_pred CcEEEEEcChHHHHH
Confidence 339999999999743
Done!