Query psy6927
Match_columns 93
No_of_seqs 107 out of 324
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 22:00:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6927.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6927hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a1 c.55.3.1 (A:430-555) H 94.3 0.04 2.9E-06 34.4 5.2 54 14-73 56-110 (126)
2 d1s1ta1 c.55.3.1 (A:430-539) H 88.2 0.28 2.1E-05 30.4 4.0 50 17-71 60-109 (110)
3 d1zbfa1 c.55.3.1 (A:62-193) BH 66.6 1.2 8.5E-05 29.0 1.6 19 19-42 64-82 (132)
4 d1ufwa_ d.58.7.1 (A:) Synaptoj 31.9 8.9 0.00065 23.7 1.4 25 16-40 54-78 (95)
5 d1j20a1 c.26.2.1 (A:1-165) Arg 26.7 13 0.00093 21.1 1.4 12 30-41 11-22 (165)
6 d1jl1a_ c.55.3.1 (A:) RNase H 25.9 18 0.0013 21.6 2.1 53 16-73 58-123 (152)
7 d1k92a1 c.26.2.1 (A:1-188) Arg 19.0 22 0.0016 20.6 1.4 13 30-42 21-33 (188)
8 d1rila_ c.55.3.1 (A:) RNase H 18.4 24 0.0018 21.1 1.6 52 16-72 59-124 (147)
9 d1y9qa1 a.35.1.8 (A:4-82) Prob 18.0 54 0.0039 17.6 3.0 15 46-60 5-19 (79)
10 d1vl2a1 c.26.2.1 (A:2-169) Arg 16.6 28 0.002 19.7 1.4 13 30-42 12-24 (168)
No 1
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=94.31 E-value=0.04 Score=34.40 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=37.5
Q ss_pred hcccceeeeeecccCCChHHHHHHHHhCCCCCchh-HHHHHHHHHHhhccCCceEecCCCC
Q psy6927 14 HSLNSIQAFSWVTYRDGDSQVALYWISSPPLRWKT-FVANRVSKIQELVSEDKWFHVKGTE 73 (93)
Q Consensus 14 ~~i~i~~~~~w~~~~~tDS~i~L~wI~~~~~~~~~-FVaNRV~~I~~~~~~~~W~hVps~~ 73 (93)
+......+.++ |||+-|+.|+.+..+.++. ....++.+..+. ....+.|||+-.
T Consensus 56 l~~~~~~i~I~-----tDS~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~wV~gH~ 110 (126)
T d1mu2a1 56 LTDSGPKVNII-----VDSQYVMGIVASQPTESESKIVNQIIEEMIKK-EAIYVAWVPAHK 110 (126)
T ss_dssp HHTSCSEEEEE-----ESCHHHHHHHHTCCSEESCHHHHHHHHHHHHC-SEEEEEECCSSS
T ss_pred hccCCcceEEE-----echHHHHHHHhcCCccccchHHHHHHHHhhhc-ceeEEEEEeCCC
Confidence 34456789999 9999999999997555443 333444444443 367899999864
No 2
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=88.17 E-value=0.28 Score=30.42 Aligned_cols=50 Identities=18% Similarity=0.054 Sum_probs=32.0
Q ss_pred cceeeeeecccCCChHHHHHHHHhCCCCCchhHHHHHHHHHHhhccCCceEecCC
Q psy6927 17 NSIQAFSWVTYRDGDSQVALYWISSPPLRWKTFVANRVSKIQELVSEDKWFHVKG 71 (93)
Q Consensus 17 ~i~~~~~w~~~~~tDS~i~L~wI~~~~~~~~~FVaNRV~~I~~~~~~~~W~hVps 71 (93)
....+.++ |||+.|+.-+......|+.=.-.++-+....-....+.|||+
T Consensus 60 ~~~~v~I~-----TDS~yvi~~i~~~~~~~~~~l~~~il~~l~~~~~v~i~WVpg 109 (110)
T d1s1ta1 60 SGLEVNIV-----TDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPA 109 (110)
T ss_dssp SCSEEEEE-----ECCHHHHHHHHHCCSEESCHHHHHHHHHHHHCSEEEEEECCS
T ss_pred CCCeEEEE-----EehHHHHHHHhcCccccchHHHHHHHHHHhcCCceEEEEeCC
Confidence 45678999 999999999987655544322222222112234678899986
No 3
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
Probab=66.59 E-value=1.2 Score=29.04 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=16.2
Q ss_pred eeeeeecccCCChHHHHHHHHhCC
Q psy6927 19 IQAFSWVTYRDGDSQVALYWISSP 42 (93)
Q Consensus 19 ~~~~~w~~~~~tDS~i~L~wI~~~ 42 (93)
.++.++ |||+.|..||++.
T Consensus 64 ~~i~I~-----tDS~yvi~wv~~~ 82 (132)
T d1zbfa1 64 SRKPIY-----SNSQTAIKWVKDK 82 (132)
T ss_dssp CCCCEE-----ESCHHHHHHHHHT
T ss_pred ceEEEE-----eccHHHHHHHHhC
Confidence 467899 9999999999763
No 4
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.89 E-value=8.9 Score=23.75 Aligned_cols=25 Identities=20% Similarity=0.229 Sum_probs=18.0
Q ss_pred ccceeeeeecccCCChHHHHHHHHh
Q psy6927 16 LNSIQAFSWVTYRDGDSQVALYWIS 40 (93)
Q Consensus 16 i~i~~~~~w~~~~~tDS~i~L~wI~ 40 (93)
+.+.+-..||||||.-|....-=++
T Consensus 54 vRFv~d~mwVTF~dG~SAL~al~l~ 78 (95)
T d1ufwa_ 54 VRINQGQMLVTFADSHSALSVLDVD 78 (95)
T ss_dssp EEEETTEEEEECSCSHHHHHHHHGG
T ss_pred EEEeCCeEEEEECCcHHHHHHhccC
Confidence 4566677999999988876544443
No 5
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=26.75 E-value=13 Score=21.12 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=10.3
Q ss_pred ChHHHHHHHHhC
Q psy6927 30 GDSQVALYWISS 41 (93)
Q Consensus 30 tDS~i~L~wI~~ 41 (93)
-||+++|++++.
T Consensus 11 ~DS~vll~lL~e 22 (165)
T d1j20a1 11 LDTSIILKWLKE 22 (165)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999874
No 6
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=25.93 E-value=18 Score=21.55 Aligned_cols=53 Identities=23% Similarity=0.119 Sum_probs=31.2
Q ss_pred ccceeeeeecccCCChHHHHHHHHhC--------CCC-CchhHHHH--HHHHHHhhcc--CCceEecCCCC
Q psy6927 16 LNSIQAFSWVTYRDGDSQVALYWISS--------PPL-RWKTFVAN--RVSKIQELVS--EDKWFHVKGTE 73 (93)
Q Consensus 16 i~i~~~~~w~~~~~tDS~i~L~wI~~--------~~~-~~~~FVaN--RV~~I~~~~~--~~~W~hVps~~ 73 (93)
.....+.+. |||..++..+.. ... ..+..+.| ...+|.++.. ...|.|||+-.
T Consensus 58 ~~~~~i~i~-----tds~~~i~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~V~~~wV~gH~ 123 (152)
T d1jl1a_ 58 KEHAEVILS-----TDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHA 123 (152)
T ss_dssp CSCCEEEEE-----ECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSST
T ss_pred cccceEEEe-----ecceeeEEcccchhhHhHhccchhcccCeeecHHHHHHHHHHhhcceeEEEEecccC
Confidence 445567778 999888655432 211 11223444 3556666554 57899999864
No 7
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.00 E-value=22 Score=20.61 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=11.0
Q ss_pred ChHHHHHHHHhCC
Q psy6927 30 GDSQVALYWISSP 42 (93)
Q Consensus 30 tDS~i~L~wI~~~ 42 (93)
-||++.|++++..
T Consensus 21 vDSsvll~lL~~~ 33 (188)
T d1k92a1 21 LDTSAALLWMRQK 33 (188)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 4999999999753
No 8
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=18.37 E-value=24 Score=21.09 Aligned_cols=52 Identities=15% Similarity=0.020 Sum_probs=28.2
Q ss_pred ccceeeeeecccCCChHHHHHHHH---------hCCC-CCchhHHHHH--HHHHHhhcc--CCceEecCCC
Q psy6927 16 LNSIQAFSWVTYRDGDSQVALYWI---------SSPP-LRWKTFVANR--VSKIQELVS--EDKWFHVKGT 72 (93)
Q Consensus 16 i~i~~~~~w~~~~~tDS~i~L~wI---------~~~~-~~~~~FVaNR--V~~I~~~~~--~~~W~hVps~ 72 (93)
.....+.+. |||..++.=+ .+.. ..-..-|.|+ +.+|.++.. ..+|.|||+-
T Consensus 59 ~~~~~i~i~-----tds~~~~~~~~~~~~~~~~~~~~~~~~~~~v~n~dL~~~l~~~~~~~~v~~~wVkgH 124 (147)
T d1rila_ 59 KEPCEVDLY-----TDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGH 124 (147)
T ss_dssp CSCCEEEEE-----CCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGG
T ss_pred cCCceEEEe-----cchhhhhccccccchhhhhhccccccccccchhHHHHHHHHHHhhhcccceEEccCC
Confidence 345667888 9999876432 2211 1111224443 344444443 4688999864
No 9
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=18.05 E-value=54 Score=17.57 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=11.9
Q ss_pred chhHHHHHHHHHHhh
Q psy6927 46 WKTFVANRVSKIQEL 60 (93)
Q Consensus 46 ~~~FVaNRV~~I~~~ 60 (93)
++.-+++|+.++|+.
T Consensus 5 ~~~~ig~~lr~~R~~ 19 (79)
T d1y9qa1 5 FKSQIANQLKNLRKS 19 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356788999999887
No 10
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=16.59 E-value=28 Score=19.66 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=10.5
Q ss_pred ChHHHHHHHHhCC
Q psy6927 30 GDSQVALYWISSP 42 (93)
Q Consensus 30 tDS~i~L~wI~~~ 42 (93)
-||++.|++++..
T Consensus 12 vDS~vl~~lL~~~ 24 (168)
T d1vl2a1 12 LDTSVILKWLCEK 24 (168)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 4999999998653
Done!