RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6927
         (93 letters)



>d2ntka1 d.153.2.1 (A:1-202) Hypothetical protein MTH1020
          {Archaeon Methanothermobacter thermautotrophicus
          [TaxId: 145262]}
          Length = 202

 Score = 25.6 bits (56), Expect = 0.79
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 28 RDGDSQVALYWIS--SPPLRWKTFVANRVSKIQELVSEDKWFHVKGTENP 75
          R+ +     Y +S  S P R  +    RV+ +     E   F      NP
Sbjct: 11 RNSNGSFVAYRVSSRSFPNRTTSIQEERVAVVPVEGHERDVF-----RNP 55


>d2qfra1 b.1.12.1 (A:9-120) Purple acid phosphatase, N-terminal
          domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
          Length = 112

 Score = 24.9 bits (54), Expect = 1.3
 Identities = 7/25 (28%), Positives = 9/25 (36%)

Query: 23 SWVTYRDGDSQVALYWISSPPLRWK 47
          SWVT  +  S    YW      +  
Sbjct: 37 SWVTMDEPGSSAVRYWSEKNGRKRI 61


>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 22.9 bits (48), Expect = 6.9
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 31  DSQVALYWISSPPLRWKTFVANRVSKIQELVSEDKWFHVKG 71
           DSQ  +  ++S P   ++ + N++ +            V  
Sbjct: 68  DSQYVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPA 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0367    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 351,668
Number of extensions: 13021
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 4
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.9 bits)