Query psy6930
Match_columns 162
No_of_seqs 113 out of 1093
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 22:09:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2302|consensus 99.8 1.7E-20 3.6E-25 179.0 4.3 99 1-102 1555-1653(1956)
2 KOG2301|consensus 99.7 1.7E-16 3.6E-21 158.8 7.8 102 2-112 1270-1372(1592)
3 KOG2302|consensus 99.6 5.4E-16 1.2E-20 148.6 7.6 104 2-112 1243-1361(1956)
4 KOG2301|consensus 99.5 3.4E-14 7.4E-19 142.4 9.6 104 2-112 949-1077(1592)
5 PF00520 Ion_trans: Ion transp 98.7 2.4E-08 5.2E-13 75.9 5.8 87 2-88 80-170 (200)
6 PLN03223 Polycystin cation cha 97.9 2.8E-05 6.1E-10 78.0 8.3 66 2-80 1313-1378(1634)
7 PF08016 PKD_channel: Polycyst 96.7 0.0076 1.7E-07 53.5 8.1 64 2-78 318-381 (425)
8 KOG3599|consensus 95.8 0.035 7.7E-07 54.0 8.1 63 2-77 575-637 (798)
9 TIGR00870 trp transient-recept 83.3 6.5 0.00014 37.3 8.4 71 8-78 496-573 (743)
10 PF11044 TMEMspv1-c74-12: Plec 67.3 10 0.00023 24.4 3.5 28 17-44 2-29 (49)
11 COG2142 SdhD Succinate dehydro 39.3 94 0.002 23.5 5.3 38 3-40 75-112 (117)
12 PF07790 DUF1628: Protein of u 37.3 45 0.00098 22.7 3.1 29 15-43 2-30 (80)
13 PF04277 OAD_gamma: Oxaloaceta 32.4 86 0.0019 21.1 3.9 29 11-39 4-32 (79)
14 KOG1545|consensus 31.3 70 0.0015 29.5 4.0 33 3-43 345-377 (507)
15 PF08391 Ly49: Ly49-like prote 31.0 16 0.00035 27.8 0.0 25 19-43 8-32 (119)
16 KOG3609|consensus 30.4 1.5E+02 0.0032 29.6 6.4 64 9-72 494-559 (822)
17 PHA00739 V3 structural protein 29.4 47 0.001 24.2 2.1 17 27-43 8-24 (92)
18 PF03929 PepSY_TM: PepSY-assoc 26.8 1.2E+02 0.0026 17.1 3.1 20 21-40 7-26 (27)
19 PRK13875 conjugal transfer pro 25.9 1.1E+02 0.0024 28.3 4.4 25 18-42 141-165 (440)
20 PF13071 DUF3935: Protein of u 24.8 99 0.0021 21.3 2.9 19 25-43 11-29 (68)
21 PF12911 OppC_N: N-terminal TM 24.6 1.1E+02 0.0023 19.2 3.0 22 19-40 17-38 (56)
22 COG3630 OadG Na+-transporting 23.3 89 0.0019 22.6 2.7 35 6-42 5-39 (84)
23 PRK14750 kdpF potassium-transp 22.9 97 0.0021 18.1 2.2 18 20-37 8-25 (29)
24 TIGR01195 oadG_fam sodium pump 21.3 2.6E+02 0.0056 19.6 4.7 30 8-37 4-33 (82)
25 PF15330 SIT: SHP2-interacting 21.2 1.6E+02 0.0034 21.9 3.7 23 16-38 3-25 (107)
26 PHA02513 V1 structural protein 21.1 89 0.0019 24.0 2.4 18 26-43 69-86 (135)
27 KOG3491|consensus 21.0 76 0.0016 21.6 1.8 20 23-42 37-56 (65)
28 KOG3713|consensus 20.9 2.5E+02 0.0054 26.4 5.7 36 3-38 329-364 (477)
29 PF05934 MCLC: Mid-1-related c 20.8 1.2E+02 0.0026 28.8 3.6 32 1-32 313-344 (549)
30 PF11628 TCR_zetazeta: T-cell 20.7 1.8E+02 0.0039 17.5 3.2 22 22-43 4-25 (33)
31 TIGR02968 succ_dehyd_anc succi 20.4 2.4E+02 0.0052 20.1 4.5 13 28-40 58-70 (105)
32 PF13172 PepSY_TM_1: PepSY-ass 20.1 1.9E+02 0.0042 16.6 3.3 19 22-40 12-30 (34)
No 1
>KOG2302|consensus
Probab=99.80 E-value=1.7e-20 Score=178.98 Aligned_cols=99 Identities=64% Similarity=1.069 Sum_probs=95.5
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCH
Q psy6930 1 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDK 80 (162)
Q Consensus 1 ~~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W 80 (162)
|+-|||.++.|+++++|+++|+.+|.+++|||||.+|++|||+..|.+++||.++.++..|.|||.||+|||+++|||||
T Consensus 1555 matgmralldtvvqalpqvgnlgllfmllffiyaalgvelfg~lec~e~npceglsrhatf~nfgmafltlfrvstgdnw 1634 (1956)
T KOG2302|consen 1555 MATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNEENPCEGLSRHATFENFGMAFLTLFRVSTGDNW 1634 (1956)
T ss_pred HHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHhcccccCCCCCccccccccchhhhchHhhhheeeccCCcc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCccC
Q psy6930 81 SSHMDKSSHMDKSSHKDTHLHS 102 (162)
Q Consensus 81 ~~Im~d~~~~~~~~~~~~~~~s 102 (162)
+.||.| .+++|++++ +|.+
T Consensus 1635 ngimkd--tlrdc~~e~-~cls 1653 (1956)
T KOG2302|consen 1635 NGIMKD--TLRDCTHEE-SCLS 1653 (1956)
T ss_pred cchhhh--hHhhcccch-hhhh
Confidence 999999 999999987 7777
No 2
>KOG2301|consensus
Probab=99.65 E-value=1.7e-16 Score=158.77 Aligned_cols=102 Identities=32% Similarity=0.487 Sum_probs=88.3
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy6930 2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKS 81 (162)
Q Consensus 2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~ 81 (162)
.+++|.|+.|++.|+|++.++++++++++|||||+|||+|+.++-+ +++++.||++|++|+++||+++|+|+|.
T Consensus 1270 ~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~------~i~~~~NF~tf~~a~i~LFr~~Tge~W~ 1343 (1592)
T KOG2301|consen 1270 AKTIRTLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG------GINDHNNFRTFPNSMVVLFRCATGEGWN 1343 (1592)
T ss_pred cchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc------ccCCCcccccchhheeeeeehhhhhhHH
Confidence 4689999999999999999999999999999999999999986542 6788999999999999999999999999
Q ss_pred HHHHhhccCC-CCCCCCCCccCCCCCCCCccc
Q psy6930 82 SHMDKSSHMD-KSSHKDTHLHSIEGRDNSSYH 112 (162)
Q Consensus 82 ~Im~d~~~~~-~~~~~~~~~~s~~~~~~~~~~ 112 (162)
++|.+|+.-. .|++..... .+ ++.|+++
T Consensus 1344 ~im~~~l~s~p~Cdp~~~~~--~~-dCGn~~~ 1372 (1592)
T KOG2301|consen 1344 DIMDDCLNSKPFCDPDDGNN--GT-DCGNPTV 1372 (1592)
T ss_pred HHHHHHhcCCCCCCCCCCCc--cc-ccCCCCc
Confidence 9999998765 588866553 11 5665554
No 3
>KOG2302|consensus
Probab=99.63 E-value=5.4e-16 Score=148.60 Aligned_cols=104 Identities=24% Similarity=0.465 Sum_probs=89.7
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhc-c-cccCCCC--------CcCC-----CCCCCCcccHHH
Q psy6930 2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFG-R-LECSDEL--------PCQG-----LGEHAHFSNFGM 66 (162)
Q Consensus 2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~-~-~~c~~~~--------~C~~-----i~~~~NFdnf~~ 66 (162)
+||+|.|+.|+++|+|+|+|++++++.+++||+|+|+|||+ + ++|...+ +|.. +.+.+||+|.|.
T Consensus 1243 a~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgq 1322 (1956)
T KOG2302|consen 1243 APGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQ 1322 (1956)
T ss_pred cccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHH
Confidence 68999999999999999999999999999999999999996 5 6887542 4554 346899999999
Q ss_pred HHHHHHHHhhcCCHHHHHHhhccCCCCCCCCCCccCCCCCCCCccc
Q psy6930 67 AFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTHLHSIEGRDNSSYH 112 (162)
Q Consensus 67 AmlTLF~i~T~e~W~~Im~d~~~~~~~~~~~~~~~s~~~~~~~~~~ 112 (162)
|+++||.++|.|+|..|||| +.+.+.. +-+|..+.||+-
T Consensus 1323 almSLFvLaSkDgWv~ImyD--gldavav-----dqqPI~nhnpwm 1361 (1956)
T KOG2302|consen 1323 ALMSLFVLASKDGWVNIMYD--GLDAVAV-----DQQPILNHNPWM 1361 (1956)
T ss_pred HHHHHHHHhcccchhhhhcc--chhhcee-----eeeccccCCcHH
Confidence 99999999999999999999 6665433 226899999975
No 4
>KOG2301|consensus
Probab=99.52 E-value=3.4e-14 Score=142.43 Aligned_cols=104 Identities=26% Similarity=0.438 Sum_probs=85.2
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhc-c-cccCCCC-----CcCC------------------CC
Q psy6930 2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFG-R-LECSDEL-----PCQG------------------LG 56 (162)
Q Consensus 2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~-~-~~c~~~~-----~C~~------------------i~ 56 (162)
+|+||.++.+++.++|.|+|++++++++++|||++|+|||+ + ++|.|++ +|.+ .+
T Consensus 949 ~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n 1028 (1592)
T KOG2301|consen 949 FPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNN 1028 (1592)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEec
Confidence 58899999999999999999999999999999999999996 4 7898763 2332 25
Q ss_pred CCCCcccHHHHHHHHHHHhhcCCHHHHHHhhccCCCCCCCCCCccCCCCCCCCccc
Q psy6930 57 EHAHFSNFGMAFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTHLHSIEGRDNSSYH 112 (162)
Q Consensus 57 ~~~NFdnf~~AmlTLF~i~T~e~W~~Im~d~~~~~~~~~~~~~~~s~~~~~~~~~~ 112 (162)
...|||++++|+++||+++|.+||.++|+. .+|+...+ -+|....+.|.
T Consensus 1029 ~~~nfDnv~~a~laLf~v~tf~GW~~i~~~--~ids~~~~-----~~p~~~~~~~~ 1077 (1592)
T KOG2301|consen 1029 RKFNFDNVGNAMLALFQVATFKGWPDIMYA--AIDSRGVN-----AQPILESNLYM 1077 (1592)
T ss_pred cccccccHHHHHHHHHHHHhcCCHHHHHHH--HhhhhccC-----cCCcccccccc
Confidence 689999999999999999999999999999 45543332 13555555554
No 5
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.72 E-value=2.4e-08 Score=75.94 Aligned_cols=87 Identities=24% Similarity=0.450 Sum_probs=70.5
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhccc--ccCC--CCCcCCCCCCCCcccHHHHHHHHHHHhhc
Q psy6930 2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRL--ECSD--ELPCQGLGEHAHFSNFGMAFLTLFRVDMD 77 (162)
Q Consensus 2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~--~c~~--~~~C~~i~~~~NFdnf~~AmlTLF~i~T~ 77 (162)
.+.++.++.++.++++.+..++++++++++.||++|.++|+.. .|.+ .....+.....+|++++.|++++|+++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~ 159 (200)
T PF00520_consen 80 FRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTG 159 (200)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccchhheeccccccccccccccccccccccccccccccccccccccccc
Confidence 4678899999999999999999999999999999999999853 2221 01122345678999999999999999999
Q ss_pred CCHHHHHHhhc
Q psy6930 78 MDKSSHMDKSS 88 (162)
Q Consensus 78 e~W~~Im~d~~ 88 (162)
++|.+++..+.
T Consensus 160 ~~~~~~~~~~~ 170 (200)
T PF00520_consen 160 EGWGDVMPSCM 170 (200)
T ss_dssp TTCCCCHHHHH
T ss_pred CCccccccccc
Confidence 99999999854
No 6
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.95 E-value=2.8e-05 Score=77.96 Aligned_cols=66 Identities=20% Similarity=0.282 Sum_probs=60.3
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCH
Q psy6930 2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDK 80 (162)
Q Consensus 2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W 80 (162)
.|.|+.+..++.+++|.|++++++++++++.||++|..+||... ..|.+|+.|+.|||+++.|+.+
T Consensus 1313 NPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~v-------------e~FSTf~sSL~TLFqMLLGDfd 1378 (1634)
T PLN03223 1313 QPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNAS-------------VHFSDMTDSINSLFENLLGDIT 1378 (1634)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------------hhhcCHHHHHHHHHHHHHcCch
Confidence 47899999999999999999999999999999999999998632 3799999999999999999755
No 7
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=96.70 E-value=0.0076 Score=53.51 Aligned_cols=64 Identities=28% Similarity=0.508 Sum_probs=57.7
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcC
Q psy6930 2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDM 78 (162)
Q Consensus 2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e 78 (162)
.|.+..+..++-++.+.+..++++++++++-||.+|.-+||... .+|.++..|+.|+|+++-++
T Consensus 318 ~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~-------------~~f~s~~~s~~tl~~~l~g~ 381 (425)
T PF08016_consen 318 NRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS-------------EDFSSFSSSLVTLFRMLLGD 381 (425)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-------------cccCCHHHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999999998632 37999999999999988776
No 8
>KOG3599|consensus
Probab=95.84 E-value=0.035 Score=53.99 Aligned_cols=63 Identities=30% Similarity=0.558 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhc
Q psy6930 2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMD 77 (162)
Q Consensus 2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~ 77 (162)
.+.++..-.|+-++.|.|..+.+..+++++-||.+|..+||... .+|.+|..+++|++...-|
T Consensus 575 ~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v-------------~~f~~f~~s~~t~~~~~~G 637 (798)
T KOG3599|consen 575 NKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV-------------SDFRTFVASIVTLLRYILG 637 (798)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-------------CChHHHHHHHHHHHHHHhc
Confidence 46788899999999999999999999999999999999999632 3688888888888877766
No 9
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=83.27 E-value=6.5 Score=37.31 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=50.0
Q ss_pred HHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCC------CCCCCCcccHHHHHHHHHHHhhcC
Q psy6930 8 LLDTVMQALP-QVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQG------LGEHAHFSNFGMAFLTLFRVDMDM 78 (162)
Q Consensus 8 lv~tl~~Slp-~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~------i~~~~NFdnf~~AmlTLF~i~T~e 78 (162)
++.++.+.+. .+..++++++++++-||+-..++|..........|.. ......|.++..++.+||...-|+
T Consensus 496 ~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~lf~~~~G~ 573 (743)
T TIGR00870 496 LQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGNAYSTLFETSQELFWAIIGL 573 (743)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccCHHHHHHHHHHHHcCC
Confidence 4556677888 9999999999999999999999996432111111110 022467889999999999766554
No 10
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=67.31 E-value=10 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy6930 17 PQVGNLGLLFFLLFFIFAALGVELFGRL 44 (162)
Q Consensus 17 p~l~nv~lLllL~~fIFAIlGmqLF~~~ 44 (162)
|....-++-..+++.|||.+|+.+|.++
T Consensus 2 p~wlt~iFsvvIil~If~~iGl~IyQki 29 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAWIGLSIYQKI 29 (49)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445667789999999999753
No 11
>COG2142 SdhD Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion]
Probab=39.29 E-value=94 Score=23.54 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy6930 3 KGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVEL 40 (162)
Q Consensus 3 ~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqL 40 (162)
-|||.+++--.++.+.-..+.++..+++.++.+.|++.
T Consensus 75 ~Glr~Ii~DYi~~~~~r~~l~~~~~~~~v~~~~~g~~~ 112 (117)
T COG2142 75 NGLRVIIEDYIKPEKLRLALQILLVLALVLTGVYGTFV 112 (117)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888888777777777777777777777766653
No 12
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=37.31 E-value=45 Score=22.69 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy6930 15 ALPQVGNLGLLFFLLFFIFAALGVELFGR 43 (162)
Q Consensus 15 Slp~l~nv~lLllL~~fIFAIlGmqLF~~ 43 (162)
++-++.-+++++.+...+.|++|..+|+.
T Consensus 2 avS~viGviLliaitVilaavv~~~~~~~ 30 (80)
T PF07790_consen 2 AVSPVIGVILLIAITVILAAVVGAFVFGL 30 (80)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566677788888888999999999986
No 13
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=32.38 E-value=86 Score=21.12 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=19.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy6930 11 TVMQALPQVGNLGLLFFLLFFIFAALGVE 39 (162)
Q Consensus 11 tl~~Slp~l~nv~lLllL~~fIFAIlGmq 39 (162)
.+.-++-+++-|++.|.++++++.+++.-
T Consensus 4 gl~i~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 4 GLQIMIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777777777776665
No 14
>KOG1545|consensus
Probab=31.27 E-value=70 Score=29.49 Aligned_cols=33 Identities=39% Similarity=0.772 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy6930 3 KGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGR 43 (162)
Q Consensus 3 ~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~ 43 (162)
+||+.+=.|+-.|+..++- |+ ||+| ||+-||+.
T Consensus 345 kGLQILGqTl~aSmrElgL---LI---FFlf--IgviLFsS 377 (507)
T KOG1545|consen 345 KGLQILGQTLRASMRELGL---LI---FFLF--IGVILFSS 377 (507)
T ss_pred chHHHHHHHHHHHHHHHHH---HH---HHHH--HHHHHHhc
Confidence 5677666666666655442 22 2222 79999963
No 15
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=30.98 E-value=16 Score=27.84 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q psy6930 19 VGNLGLLFFLLFFIFAALGVELFGR 43 (162)
Q Consensus 19 l~nv~lLllL~~fIFAIlGmqLF~~ 43 (162)
...+++|++++....|++|+++|-.
T Consensus 8 av~LGILCllLLvtv~vL~t~ifQ~ 32 (119)
T PF08391_consen 8 AVALGILCLLLLVTVAVLGTMIFQY 32 (119)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888999999999964
No 16
>KOG3609|consensus
Probab=30.44 E-value=1.5e+02 Score=29.62 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=42.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCC--CCCCcccHHHHHHHHH
Q psy6930 9 LDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLG--EHAHFSNFGMAFLTLF 72 (162)
Q Consensus 9 v~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~--~~~NFdnf~~AmlTLF 72 (162)
.-.+.+.+..+..++++..++++-|++=-.|||-.+.-....+|.+.. ....|.++..++-|||
T Consensus 494 qISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~~~fsti~eS~~tLF 559 (822)
T KOG3609|consen 494 QISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTTDSFSTIGESSKTLF 559 (822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccccccccHHHHHHHHH
Confidence 345667888899999999999999997666777543211111232211 1226888888888888
No 17
>PHA00739 V3 structural protein VP3
Probab=29.41 E-value=47 Score=24.17 Aligned_cols=17 Identities=35% Similarity=0.852 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy6930 27 FLLFFIFAALGVELFGR 43 (162)
Q Consensus 27 lL~~fIFAIlGmqLF~~ 43 (162)
.++++||-++|+-||.-
T Consensus 8 iifL~iFi~iGivlf~p 24 (92)
T PHA00739 8 IIFLFIFILIGIVLFQP 24 (92)
T ss_pred HHHHHHHHHHHHhhcch
Confidence 45677889999999974
No 18
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=26.79 E-value=1.2e+02 Score=17.13 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy6930 21 NLGLLFFLLFFIFAALGVEL 40 (162)
Q Consensus 21 nv~lLllL~~fIFAIlGmqL 40 (162)
.+..+..++++++++-|+.+
T Consensus 7 w~~~i~al~~lv~~iTGl~l 26 (27)
T PF03929_consen 7 WFGDIFALFMLVFAITGLIL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45667778888888888754
No 19
>PRK13875 conjugal transfer protein TrbL; Provisional
Probab=25.93 E-value=1.1e+02 Score=28.32 Aligned_cols=25 Identities=32% Similarity=0.560 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy6930 18 QVGNLGLLFFLLFFIFAALGVELFG 42 (162)
Q Consensus 18 ~l~nv~lLllL~~fIFAIlGmqLF~ 42 (162)
.+.-+.+..++++..|.++++|+|-
T Consensus 141 ~i~vl~la~liVLLaF~iIAvqmfv 165 (440)
T PRK13875 141 QIAVLLLAWLLVLLAFFILAIQLFV 165 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345567788889999999984
No 20
>PF13071 DUF3935: Protein of unknown function (DUF3935)
Probab=24.78 E-value=99 Score=21.27 Aligned_cols=19 Identities=32% Similarity=0.773 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q psy6930 25 LFFLLFFIFAALGVELFGR 43 (162)
Q Consensus 25 LllL~~fIFAIlGmqLF~~ 43 (162)
++-++.|-|+.+|+|.|..
T Consensus 11 ~IsfFVFwfsmLGVqmfae 29 (68)
T PF13071_consen 11 IISFFVFWFSMLGVQMFAE 29 (68)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3445566789999999974
No 21
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.56 E-value=1.1e+02 Score=19.16 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy6930 19 VGNLGLLFFLLFFIFAALGVEL 40 (162)
Q Consensus 19 l~nv~lLllL~~fIFAIlGmqL 40 (162)
++-+.+++++++++.|++|-.+
T Consensus 17 ~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 17 LAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 4445566667777788887544
No 22
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=23.31 E-value=89 Score=22.56 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy6930 6 RALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFG 42 (162)
Q Consensus 6 r~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~ 42 (162)
..+.+.+.-.+-+++-| +++|++++|++-||--+-
T Consensus 5 ~ll~eg~~L~vlGmg~V--flfL~iLi~~~~~m~~~v 39 (84)
T COG3630 5 GLLLEGITLMVLGMGFV--FLFLSILIYAMRGMGAVV 39 (84)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 44455555555555544 456677789999998774
No 23
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=22.85 E-value=97 Score=18.07 Aligned_cols=18 Identities=28% Similarity=0.633 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6930 20 GNLGLLFFLLFFIFAALG 37 (162)
Q Consensus 20 ~nv~lLllL~~fIFAIlG 37 (162)
+-++.++++..++||++.
T Consensus 8 g~llv~lLl~YLvYAL~n 25 (29)
T PRK14750 8 GALLVLLLLGYLVYALFN 25 (29)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 345566667777888764
No 24
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=21.29 E-value=2.6e+02 Score=19.59 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=16.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy6930 8 LLDTVMQALPQVGNLGLLFFLLFFIFAALG 37 (162)
Q Consensus 8 lv~tl~~Slp~l~nv~lLllL~~fIFAIlG 37 (162)
+...+.-.+-+++-|+++|.+++++..+++
T Consensus 4 l~~~~~l~v~GM~~VF~fL~lLi~~i~~~~ 33 (82)
T TIGR01195 4 LLEGATLTVLGMGIVFLFLSLLIYAVRGMG 33 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666555555544444
No 25
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=21.17 E-value=1.6e+02 Score=21.92 Aligned_cols=23 Identities=26% Similarity=-0.001 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy6930 16 LPQVGNLGLLFFLLFFIFAALGV 38 (162)
Q Consensus 16 lp~l~nv~lLllL~~fIFAIlGm 38 (162)
+|.+..+++++++++-+.+..-+
T Consensus 3 Ll~il~llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMK 25 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444
No 26
>PHA02513 V1 structural protein V1; Reviewed
Probab=21.12 E-value=89 Score=24.03 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy6930 26 FFLLFFIFAALGVELFGR 43 (162)
Q Consensus 26 llL~~fIFAIlGmqLF~~ 43 (162)
..++++||-++|+-||.-
T Consensus 69 ~ii~L~IFIliGivl~~p 86 (135)
T PHA02513 69 VLLGLFIFILIGIVLLPV 86 (135)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 345667888999999974
No 27
>KOG3491|consensus
Probab=20.98 E-value=76 Score=21.65 Aligned_cols=20 Identities=30% Similarity=0.477 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy6930 23 GLLFFLLFFIFAALGVELFG 42 (162)
Q Consensus 23 ~lLllL~~fIFAIlGmqLF~ 42 (162)
...+++-+|+|-|.|-.+|.
T Consensus 37 vgPwLlglFvFVVcGSa~Fq 56 (65)
T KOG3491|consen 37 VGPWLLGLFVFVVCGSALFQ 56 (65)
T ss_pred cchHHHHHHHHHhhcHHHHH
Confidence 35678888999999999986
No 28
>KOG3713|consensus
Probab=20.85 E-value=2.5e+02 Score=26.38 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy6930 3 KGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGV 38 (162)
Q Consensus 3 ~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGm 38 (162)
.|||.+-.|+-+|...++-+++.+.+-+.|||.+.-
T Consensus 329 ~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY 364 (477)
T KOG3713|consen 329 TGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVY 364 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888889989999888877777776667765543
No 29
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=20.82 E-value=1.2e+02 Score=28.82 Aligned_cols=32 Identities=19% Similarity=0.504 Sum_probs=23.0
Q ss_pred CchhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy6930 1 MAKGIRALLDTVMQALPQVGNLGLLFFLLFFI 32 (162)
Q Consensus 1 ~~~gLr~lv~tl~~Slp~l~nv~lLllL~~fI 32 (162)
+.+++...+.++++-+|.+..+.++++++++|
T Consensus 313 IGkgigEfiraLlkeIPvllQIPVLIii~L~I 344 (549)
T PF05934_consen 313 IGKGIGEFIRALLKEIPVLLQIPVLIIIALAI 344 (549)
T ss_pred HHHHHHHHHHHHHhcCCchhhhHHHHHHHHHH
Confidence 35778888999999999887766555444444
No 30
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=20.68 E-value=1.8e+02 Score=17.45 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q psy6930 22 LGLLFFLLFFIFAALGVELFGR 43 (162)
Q Consensus 22 v~lLllL~~fIFAIlGmqLF~~ 43 (162)
++.++--+.++|+|+=..||-+
T Consensus 4 lCYiLDgiL~iYgiiiT~L~~R 25 (33)
T PF11628_consen 4 LCYILDGILFIYGIIITALYCR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHHHHHH
Confidence 5567778899999999999964
No 31
>TIGR02968 succ_dehyd_anc succinate dehydrogenase, hydrophobic membrane anchor protein. In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase, a TCA cycle enzyme, are SdhC and SdhD. This family is the SdhD, the hydrophobic membrane anchor protein. SdhC is apocytochrome b558, which also plays a role in anchoring the complex.
Probab=20.39 E-value=2.4e+02 Score=20.10 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q psy6930 28 LLFFIFAALGVEL 40 (162)
Q Consensus 28 L~~fIFAIlGmqL 40 (162)
+..+.-+..|++-
T Consensus 58 ~~~~~H~~~Glr~ 70 (105)
T TIGR02968 58 LALLYHAWIGMRV 70 (105)
T ss_pred HHHHHHHHHhHHH
Confidence 3333444445443
No 32
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=20.09 E-value=1.9e+02 Score=16.59 Aligned_cols=19 Identities=32% Similarity=0.600 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy6930 22 LGLLFFLLFFIFAALGVEL 40 (162)
Q Consensus 22 v~lLllL~~fIFAIlGmqL 40 (162)
+.++..++++++++-|+-+
T Consensus 12 ~g~~~~~~ll~~~lTG~~l 30 (34)
T PF13172_consen 12 LGLIAAIFLLLLALTGALL 30 (34)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566677777888887754
Done!