Query psy6930
Match_columns 162
No_of_seqs 113 out of 1093
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:10:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dxw_A Navrh, ION transport pr 99.6 1.2E-14 4.2E-19 116.4 10.4 76 2-89 116-191 (229)
2 4f4l_A ION transport protein; 99.6 5.4E-16 1.8E-20 114.5 1.0 60 15-86 2-61 (112)
3 3rvy_A ION transport protein; 99.2 1.6E-11 5.4E-16 101.2 5.4 75 2-88 131-206 (285)
4 2r9r_B Paddle chimera voltage 97.5 0.00015 5.2E-09 65.0 7.1 69 2-82 326-394 (514)
5 3beh_A MLL3241 protein; transm 96.8 0.0012 4E-08 55.2 5.0 69 2-82 112-180 (355)
6 1orq_C Potassium channel; volt 73.5 10 0.00035 29.0 6.9 53 18-82 132-184 (223)
7 2wdq_D Succinate dehydrogenase 33.2 50 0.0017 23.2 4.0 37 4-40 75-111 (115)
8 4dc2_Z Partitioning defective 23.7 26 0.00088 19.5 0.8 13 135-148 8-20 (28)
9 2hac_A T-cell surface glycopro 21.9 87 0.003 18.0 2.8 22 22-43 4-25 (33)
10 3vou_A ION transport 2 domain 21.8 1.9E+02 0.0065 20.6 5.6 38 3-40 9-47 (148)
No 1
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.57 E-value=1.2e-14 Score=116.43 Aligned_cols=76 Identities=21% Similarity=0.498 Sum_probs=70.4
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy6930 2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKS 81 (162)
Q Consensus 2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~ 81 (162)
.|++|.++.++.+++|+++++.+++++++++||++|+++|++.. +.||++++.|++++|+++|+|||.
T Consensus 116 ~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~------------~~~F~~~~~a~~~lf~~~t~~~w~ 183 (229)
T 4dxw_A 116 IPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDD------------PSRWGDLGISLITLFQVLTLSSWE 183 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS------------CTTTSSHHHHHHHHHHHHTTSSTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------------cccccCHHHHHHHHHHHHccCCHH
Confidence 47899999999999999999999999999999999999998743 358999999999999999999999
Q ss_pred HHHHhhcc
Q psy6930 82 SHMDKSSH 89 (162)
Q Consensus 82 ~Im~d~~~ 89 (162)
++|++++.
T Consensus 184 ~i~~~~~~ 191 (229)
T 4dxw_A 184 TVMLPMQE 191 (229)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999654
No 2
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=99.55 E-value=5.4e-16 Score=114.46 Aligned_cols=60 Identities=23% Similarity=0.362 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHHHHHHh
Q psy6930 15 ALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKSSHMDK 86 (162)
Q Consensus 15 Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~~Im~d 86 (162)
++++++|+++++++++||||++|+++|++.. +.||+|+++|++|||+++|+|+|.++|++
T Consensus 2 s~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~------------~~~F~~~~~s~ltLF~i~T~e~W~~~~~~ 61 (112)
T 4f4l_A 2 SHMGVGSVAALLTVVFYIAAVMATNLYGATF------------PEWFGDLSKSLYTLFQVMTLESWSMGIVR 61 (112)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHTTTC------------HHHHSSHHHHHHHHHHHHTTTTCCCCCHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHCCCc------------cccccCHHHHHHHHHHHHHccccHHHHHH
Confidence 6789999999999999999999999998643 34799999999999999999999876655
No 3
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.18 E-value=1.6e-11 Score=101.18 Aligned_cols=75 Identities=25% Similarity=0.420 Sum_probs=68.8
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy6930 2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKS 81 (162)
Q Consensus 2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~ 81 (162)
.+++|.++.++.+++|.++++++++++++++||++|+++|++.. +.||++++.|+.++|+++|++||.
T Consensus 131 ~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~~~------------~~~F~s~~~a~~~~~~~~T~~g~~ 198 (285)
T 3rvy_A 131 VPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERF------------PEWFGTLGESFYTLFQVMTLESWS 198 (285)
T ss_dssp STTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTTTC------------HHHHSSHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc------------ccccCCHHHHHHHHHHHHHhCCCc
Confidence 47899999999999999999999999999999999999998532 347999999999999999999999
Q ss_pred -HHHHhhc
Q psy6930 82 -SHMDKSS 88 (162)
Q Consensus 82 -~Im~d~~ 88 (162)
++|++++
T Consensus 199 ~di~~p~~ 206 (285)
T 3rvy_A 199 MGIVRPLM 206 (285)
T ss_dssp CCCHHHHH
T ss_pred HHHHHHHH
Confidence 9998853
No 4
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=97.53 E-value=0.00015 Score=65.00 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=56.2
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy6930 2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKS 81 (162)
Q Consensus 2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~ 81 (162)
.+++|.+..++..+++.++.+++++++++++||.++....+. ....+|++++.|++..+..+|..||.
T Consensus 326 ~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~------------~~~~~F~s~~~a~y~~~vT~TTvGYG 393 (514)
T 2r9r_B 326 SKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAD------------ERDSQFPSIPDAFWWAVVSMTTVGYG 393 (514)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CTTCSCSSHHHHHHHHHHHHTTCCCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecc------------CCCccccchhhhhheeeeEEEecccC
Confidence 467899999999999999998888888888898887754322 23568999999999999999988864
Q ss_pred H
Q psy6930 82 S 82 (162)
Q Consensus 82 ~ 82 (162)
+
T Consensus 394 D 394 (514)
T 2r9r_B 394 D 394 (514)
T ss_dssp S
T ss_pred C
Confidence 4
No 5
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=96.82 E-value=0.0012 Score=55.23 Aligned_cols=69 Identities=10% Similarity=0.032 Sum_probs=56.0
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy6930 2 AKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKS 81 (162)
Q Consensus 2 ~~gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~ 81 (162)
.+++|.+..++.++.+.+..+++++++++++||+++..+++... +.+|.+++.|+...+..+|..||.
T Consensus 112 ~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~------------~~~f~~~~~s~y~~~~t~ttvGyg 179 (355)
T 3beh_A 112 STFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQ------------PEKFGSIPQAMWWAVVTLSTTGYG 179 (355)
T ss_dssp CSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC------------HHHHSSHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------------CcccccHHHHHHHHHhheeecCCC
Confidence 35788889999999999999999999999999999998876432 235778888888888888877764
Q ss_pred H
Q psy6930 82 S 82 (162)
Q Consensus 82 ~ 82 (162)
+
T Consensus 180 d 180 (355)
T 3beh_A 180 D 180 (355)
T ss_dssp S
T ss_pred C
Confidence 3
No 6
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=73.47 E-value=10 Score=28.95 Aligned_cols=53 Identities=8% Similarity=-0.109 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHHHHHHHhhcCCHHH
Q psy6930 18 QVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFLTLFRVDMDMDKSS 82 (162)
Q Consensus 18 ~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~AmlTLF~i~T~e~W~~ 82 (162)
.+..++++++++++++|++ +..+.+. ....+|.+++.|+.-.+..+|..||.+
T Consensus 132 ~l~~~~~~~~~~~~~~~~~-~~~~e~~-----------~~~~~~~~~~~s~y~~~~t~tTvGyGd 184 (223)
T 1orq_C 132 RFYHLFGAVMLTVLYGAFA-IYIVEYP-----------DPNSSIKSVFDALWWAVVTATTVGYGD 184 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHTTSS-----------STTCSCCSHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhC-----------CcCCCcCcchhHHHhHHhHHhccCCCC
Confidence 3455555555555555543 3333221 123468899999999888888887754
No 7
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=33.17 E-value=50 Score=23.24 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy6930 4 GIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVEL 40 (162)
Q Consensus 4 gLr~lv~tl~~Slp~l~nv~lLllL~~fIFAIlGmqL 40 (162)
|+|.++.-..+....-.-+..++.++.+.|++.|++.
T Consensus 75 Gir~ii~Dyv~~~~~R~~l~~~~~~~~~~~~~~g~~i 111 (115)
T 2wdq_D 75 GMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVV 111 (115)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444444333222333333344444555555543
No 8
>4dc2_Z Partitioning defective 3 homolog; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Rattus norvegicus}
Probab=23.67 E-value=26 Score=19.47 Aligned_cols=13 Identities=46% Similarity=0.498 Sum_probs=8.8
Q ss_pred HhhccccccCCCCC
Q psy6930 135 LKTNGRQQSMSDPS 148 (162)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (162)
+..||| ||||.-+
T Consensus 8 rEgFgR-QsmSekr 20 (28)
T 4dc2_Z 8 REGFGR-QSMSEKR 20 (28)
T ss_pred hhhhcc-ccccccc
Confidence 567888 4787654
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=21.90 E-value=87 Score=17.97 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q psy6930 22 LGLLFFLLFFIFAALGVELFGR 43 (162)
Q Consensus 22 v~lLllL~~fIFAIlGmqLF~~ 43 (162)
++.++--+.++|+|+=..||-+
T Consensus 4 lCYiLDgiL~iYgii~T~Ly~R 25 (33)
T 2hac_A 4 LCYLLDGILFIYGVILTALFLR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeehHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999964
No 10
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=21.85 E-value=1.9e+02 Score=20.60 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHh
Q psy6930 3 KGIRALLDTVMQALPQV-GNLGLLFFLLFFIFAALGVEL 40 (162)
Q Consensus 3 ~gLr~lv~tl~~Slp~l-~nv~lLllL~~fIFAIlGmqL 40 (162)
..+++++..+.+.++.- ..+.+++++++++++.++...
T Consensus 9 ~~l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 47 (148)
T 3vou_A 9 LTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYST 47 (148)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666664432 233344444555555555543
Done!