Query psy6930
Match_columns 162
No_of_seqs 113 out of 1093
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 22:10:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h8pc1 f.14.1.1 (C:22-78) Pot 34.4 41 0.003 19.8 7.0 41 17-69 6-46 (57)
2 d2axti1 f.23.37.1 (I:1-35) Pho 27.2 41 0.003 18.1 3.5 20 17-36 5-24 (35)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 26.8 60 0.0044 20.3 5.2 21 59-79 36-56 (103)
4 d1xmec1 f.23.9.1 (C:2-34) Bact 17.8 70 0.0051 16.7 3.9 6 33-38 23-28 (33)
5 d1nekd_ f.21.2.2 (D:) Succinat 11.0 1.4E+02 0.01 18.9 4.0 25 17-41 53-77 (113)
6 d1gvpa_ b.40.4.7 (A:) Gene V p 9.0 36 0.0026 22.0 0.2 16 144-159 62-77 (87)
7 d1q1fa_ a.1.1.2 (A:) Neuroglob 5.2 1E+02 0.0076 19.8 1.0 25 58-82 101-125 (148)
8 d2vv5a3 f.34.1.1 (A:27-112) Me 5.1 1.9E+02 0.014 16.9 2.4 12 19-30 46-57 (86)
9 d1eysh2 f.23.10.1 (H:7-43) Pho 5.0 2.7E+02 0.02 14.8 2.8 16 25-40 9-24 (37)
10 d2axtk1 f.23.36.1 (K:10-46) Ph 4.8 2.8E+02 0.02 14.7 2.5 23 8-30 8-30 (37)
No 1
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=34.42 E-value=41 Score=19.77 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcCCCCCCCCcccHHHHHH
Q psy6930 17 PQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAHFSNFGMAFL 69 (162)
Q Consensus 17 p~l~nv~lLllL~~fIFAIlGmqLF~~~~c~~~~~C~~i~~~~NFdnf~~Aml 69 (162)
+.++...+++++++++|+ .++.+...-. ++.+|.+++.|+-
T Consensus 6 R~~~~~~~~~~i~i~~~s-~~~y~~E~~~-----------~~~~f~sip~a~W 46 (57)
T d2h8pc1 6 RAAGAATVLLVIVLLAGS-YLAVLAERGA-----------PGAQLITYPRALW 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHTTS-----------TTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhcCC-----------CCccccccchhhh
Confidence 455666666666666666 4455544311 2357888877664
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=27.23 E-value=41 Score=18.12 Aligned_cols=20 Identities=30% Similarity=0.565 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy6930 17 PQVGNLGLLFFLLFFIFAAL 36 (162)
Q Consensus 17 p~l~nv~lLllL~~fIFAIl 36 (162)
+-..+...+.++..|||+.+
T Consensus 5 Ki~Vy~vV~fFv~lFiFGFL 24 (35)
T d2axti1 5 KITVYIVVTFFVLLFVFGFL 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEehhhHHHHHHHHHHHhhc
Confidence 44455556666666676643
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=26.77 E-value=60 Score=20.34 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=10.5
Q ss_pred CCcccHHHHHHHHHHHhhcCC
Q psy6930 59 AHFSNFGMAFLTLFRVDMDMD 79 (162)
Q Consensus 59 ~NFdnf~~AmlTLF~i~T~e~ 79 (162)
.+|.+++.|+.--+..+|.-|
T Consensus 36 ~~~~s~~~aly~~~vT~tTvG 56 (103)
T d1r3jc_ 36 AQLITYPRALWWSVETATTVG 56 (103)
T ss_dssp CCCCSHHHHHHHHHHHHTTCC
T ss_pred cccCchhhhhhhheeeecccc
Confidence 345566666554444444433
No 4
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=17.81 E-value=70 Score=16.67 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy6930 33 FAALGV 38 (162)
Q Consensus 33 FAIlGm 38 (162)
|+++++
T Consensus 23 ~gv~av 28 (33)
T d1xmec1 23 LGVYAV 28 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344433
No 5
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=10.99 E-value=1.4e+02 Score=18.94 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6930 17 PQVGNLGLLFFLLFFIFAALGVELF 41 (162)
Q Consensus 17 p~l~nv~lLllL~~fIFAIlGmqLF 41 (162)
|...-+..++++..+..+.+|++.-
T Consensus 53 ~~~~il~~l~l~~~~~H~~lGl~~I 77 (113)
T d1nekd_ 53 AFTKVFTLLALFSILIHAWIGMWQV 77 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 3333444555556666677777665
No 6
>d1gvpa_ b.40.4.7 (A:) Gene V protein {Enterobacteria phage M13, including coliphage f1 [TaxId: 10870]}
Probab=9.05 E-value=36 Score=22.01 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=13.0
Q ss_pred CCCCCcccccCCCCcC
Q psy6930 144 MSDPSSINVNHKNNLD 159 (162)
Q Consensus 144 ~~~~~~~~~~~~~~~~ 159 (162)
.-||+|+-+|++++|.
T Consensus 62 ~i~p~S~~~~~~G~l~ 77 (87)
T d1gvpa_ 62 TVHLSSFKVGQFGSLM 77 (87)
T ss_dssp EECGGGEEECTTSSEE
T ss_pred EEchHHeeeeccCCEE
Confidence 3588999999988875
No 7
>d1q1fa_ a.1.1.2 (A:) Neuroglobin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.16 E-value=1e+02 Score=19.78 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=19.7
Q ss_pred CCCcccHHHHHHHHHHHhhcCCHHH
Q psy6930 58 HAHFSNFGMAFLTLFRVDMDMDKSS 82 (162)
Q Consensus 58 ~~NFdnf~~AmlTLF~i~T~e~W~~ 82 (162)
..+|+.++.+++..++-..++.|..
T Consensus 101 ~~~f~~~~~~l~~~l~~~lg~~~t~ 125 (148)
T d1q1fa_ 101 LSSFSTVGESLLYMLEKSLGPDFTP 125 (148)
T ss_dssp TTHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHccccCCH
Confidence 5689999999999997776655543
No 8
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=5.13 E-value=1.9e+02 Score=16.94 Aligned_cols=12 Identities=25% Similarity=0.539 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy6930 19 VGNLGLLFFLLF 30 (162)
Q Consensus 19 l~nv~lLllL~~ 30 (162)
+.++.+..+.++
T Consensus 46 ~~~~~i~~i~~~ 57 (86)
T d2vv5a3 46 LVRYGIIAFTLI 57 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 9
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=5.03 E-value=2.7e+02 Score=14.80 Aligned_cols=16 Identities=19% Similarity=0.413 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHh
Q psy6930 25 LFFLLFFIFAALGVEL 40 (162)
Q Consensus 25 LllL~~fIFAIlGmqL 40 (162)
.+-+||..||.+-..|
T Consensus 9 ~ly~Fw~FFagLi~YL 24 (37)
T d1eysh2 9 TIWAFWLFFFGLIIYL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555666554444
No 10
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.80 E-value=2.8e+02 Score=14.70 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q psy6930 8 LLDTVMQALPQVGNLGLLFFLLF 30 (162)
Q Consensus 8 lv~tl~~Slp~l~nv~lLllL~~ 30 (162)
++..++..+|.|--+.+++.++|
T Consensus 8 ~f~PivdvlPiIPv~f~lLafVW 30 (37)
T d2axtk1 8 IFDPLVDVLPVIPVLFLALAFVW 30 (37)
T ss_dssp GCHHHHHHGGGHHHHHHHHHHHH
T ss_pred hhchHHHHhccHHHHHHHHHHHH
Done!