RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6930
         (162 letters)



>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
           channel, sodium selective, gated ION channel; HET: BNG
           PX4; 3.05A {Alpha proteobacterium HIMB114}
          Length = 229

 Score = 77.0 bits (190), Expect = 4e-18
 Identities = 15/74 (20%), Positives = 41/74 (55%), Gaps = 12/74 (16%)

Query: 1   MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
           +   ++ +++ +++++ +V  + LL F++ +I+A +G  LFG              + + 
Sbjct: 115 VIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGN------------DDPSR 162

Query: 61  FSNFGMAFLTLFRV 74
           + + G++ +TLF+V
Sbjct: 163 WGDLGISLITLFQV 176


>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
           sodium-selective ION C membrane, metal transport; HET:
           PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
          Length = 285

 Score = 74.4 bits (183), Expect = 8e-17
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 1   MAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVELFGRLECSDELPCQGLGEHAH 60
               +R ++  ++  +P + ++  L  L F+IFA +  +LFG                  
Sbjct: 130 AVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGER------------FPEW 177

Query: 61  FSNFGMAFLTLFRV 74
           F   G +F TLF+V
Sbjct: 178 FGTLGESFYTLFQV 191


>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
           protein, transport protein; HET: BOG; 1.65A {Aquifex
           aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
           2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
           3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
           3uso_A 3usp_A* 3qs5_A* ...
          Length = 519

 Score = 29.3 bits (66), Expect = 0.65
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 8/30 (26%)

Query: 14  QALPQV------GNL-GLLFFLLFFIFAAL 36
             LP +      G   G L+F L F FA L
Sbjct: 325 ITLPAIFSQTAGGTFLGFLWFFLLF-FAGL 353


>2jtk_A Dickkopf-related protein 2; domain, developmental protein,
          glycoprotein, secreted, WNT signaling pathway,
          signaling protein; NMR {Mus musculus}
          Length = 90

 Score = 25.9 bits (56), Expect = 2.7
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 35 ALGVELFGRLECSDELPCQGLGEHA 59
          + G+E+F R +C+  L C+   +  
Sbjct: 53 SHGLEIFQRCDCAKGLSCKVWKDAT 77


>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
           glutamate-GABA antiporter, transport protein; 3.10A
           {Escherichia coli} PDB: 4dji_A
          Length = 511

 Score = 26.4 bits (58), Expect = 5.1
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 16  LPQVGNLGLLFFLLFFIFAALGVELFG 42
            P    +G L   + FI + +GVE   
Sbjct: 195 FPDFSKVGTLVVFVAFILSYMGVEASA 221


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0459    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,181,151
Number of extensions: 112256
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 7
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)