RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6930
         (162 letters)



>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 303

 Score = 26.6 bits (59), Expect = 1.5
 Identities = 4/29 (13%), Positives = 11/29 (37%), Gaps = 5/29 (17%)

Query: 19  VGNLGLLFFLLFF-----IFAALGVELFG 42
               G+  + ++      +   +G+ L G
Sbjct: 260 ATMEGIHRWAIWMAVLVTLTGGIGILLSG 288


>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common
           tobacco (Nicotiana tabacum) [TaxId: 4097]}
          Length = 398

 Score = 25.6 bits (55), Expect = 3.8
 Identities = 6/57 (10%), Positives = 14/57 (24%)

Query: 56  GEHAHFSNFGMAFLTLFRVDMDMDKSSHMDKSSHMDKSSHKDTHLHSIEGRDNSSYH 112
            E       GM   T+  + +       +  +    K+      +    G   +   
Sbjct: 82  AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVID 138


>d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase,
           C-terminal domain {Maize (Zea mays) [TaxId: 4577]}
          Length = 356

 Score = 25.1 bits (54), Expect = 4.9
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 25  LFFLLFFIFAALGVELFGRLECSDELPC-----QGLGEHAHFSNFGMAFLTLFRVDMDMD 79
           +  +   +FA +G  +  ++    E+P        + E A F +FG   LT        D
Sbjct: 206 IRQVAEKVFANVGKTIGYKVGTMIEIPRAALVADEIAEQAEFFSFGTNDLTQMTFGYSRD 265

Query: 80  KSSHMDKSSHMDKSSHKD 97
                            D
Sbjct: 266 DVGKFIPVYLAQGILQHD 283


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 508,631
Number of extensions: 19437
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 7
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)