BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6931
(81 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|322801460|gb|EFZ22121.1| hypothetical protein SINV_07959 [Solenopsis invicta]
Length = 571
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 22 IKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTKR 81
+K+A F++IDGEFTGLN+GP P+DTPAQYY K+R GSMDFLL+QFGL F YD+ T +
Sbjct: 19 LKNATFLSIDGEFTGLNSGPEAGPFDTPAQYYGKLRAGSMDFLLVQFGLSVFTYDSETNK 78
>gi|307167442|gb|EFN61018.1| Poly(A)-specific ribonuclease PARN [Camponotus floridanus]
Length = 571
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 39/60 (65%), Positives = 50/60 (83%)
Query: 22 IKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTKR 81
I++A F++IDGEFTGLN+GP+ P+DTPAQYY K+R GSMDFLL+QFGL F YD+ T +
Sbjct: 19 IQNATFLSIDGEFTGLNSGPDAGPFDTPAQYYAKLRAGSMDFLLVQFGLSTFTYDSQTDK 78
>gi|260821597|ref|XP_002606119.1| hypothetical protein BRAFLDRAFT_125118 [Branchiostoma floridae]
gi|229291457|gb|EEN62129.1| hypothetical protein BRAFLDRAFT_125118 [Branchiostoma floridae]
Length = 490
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 3/76 (3%)
Query: 9 ILQHN---ITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLL 65
I +HN + + ++A+ A F+ IDGEFTGLNNGP +DTP + YDK+R+GS+DFL
Sbjct: 3 ITRHNFKQVIDQVSEAVDEASFLCIDGEFTGLNNGPALHGFDTPQERYDKLRKGSLDFLF 62
Query: 66 IQFGLCAFKYDNTTKR 81
+QFGLCAFKY+ R
Sbjct: 63 VQFGLCAFKYETEESR 78
>gi|350427143|ref|XP_003494666.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Bombus
impatiens]
Length = 821
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
+ IKSA F+ IDGEFTGLN+GP+ +DTPAQYY +R GSMDFLLIQFGL F ++ T
Sbjct: 17 EVIKSATFLAIDGEFTGLNSGPDAGAFDTPAQYYANLRSGSMDFLLIQFGLSVFTFNTQT 76
Query: 80 KR 81
++
Sbjct: 77 QK 78
>gi|340716096|ref|XP_003396538.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Bombus
terrestris]
Length = 809
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/62 (59%), Positives = 48/62 (77%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
+ IK+ F+ IDGEFTGLN+GP+ +DTPAQYY K+R GSMDFLLIQFGL F ++ T
Sbjct: 17 EVIKNGTFLAIDGEFTGLNSGPDAGAFDTPAQYYAKLRSGSMDFLLIQFGLSVFTFNTQT 76
Query: 80 KR 81
++
Sbjct: 77 QK 78
>gi|345485560|ref|XP_001607788.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Nasonia
vitripennis]
Length = 779
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
+ + A F+ IDGEFTGLN+GP+ +DTPAQYY K+R+GSM+FLL+QFGL F Y++ T
Sbjct: 17 EVLDKATFLAIDGEFTGLNSGPDANAFDTPAQYYTKLRKGSMNFLLVQFGLAVFTYNSKT 76
>gi|332023541|gb|EGI63777.1| Poly(A)-specific ribonuclease PARN [Acromyrmex echinatior]
Length = 611
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 51/75 (68%)
Query: 7 PMILQHNITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLI 66
P H++ + IK A F++IDGEFTGL GP+ +DTPAQYY KIR GSM+FLL+
Sbjct: 44 PRHRDHDVLSELDSVIKDATFLSIDGEFTGLIVGPDGGQFDTPAQYYSKIRAGSMNFLLM 103
Query: 67 QFGLCAFKYDNTTKR 81
QFGL F Y++ T +
Sbjct: 104 QFGLSVFTYNSDTHK 118
>gi|380013456|ref|XP_003690772.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Apis florea]
Length = 515
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 22 IKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTKR 81
+K+A F+ IDGEFTGLN+GP+ +DTPAQYY K+R GSMDFLLIQFGL F ++ ++
Sbjct: 19 LKNATFLCIDGEFTGLNSGPDAGVFDTPAQYYAKLRTGSMDFLLIQFGLSVFTFNKEIQK 78
>gi|328776032|ref|XP_392167.3| PREDICTED: poly(A)-specific ribonuclease PARN-like [Apis
mellifera]
Length = 897
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 22 IKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTKR 81
+K+A F+ IDGEFTGLN+GP+ +DTPAQYY K+R GSMDFLLIQFGL F ++ ++
Sbjct: 19 LKNATFLCIDGEFTGLNSGPDGGVFDTPAQYYAKLRTGSMDFLLIQFGLSVFTFNKEMQK 78
>gi|383864733|ref|XP_003707832.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Megachile
rotundata]
Length = 577
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 22 IKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTKR 81
+K+A F+ IDGEFTGL++GP+ +DTPAQYY K+R GSMDFLL+QFGL F +D +
Sbjct: 19 LKNASFIGIDGEFTGLHSGPDPGAFDTPAQYYAKLRAGSMDFLLVQFGLSVFTFDKEANK 78
>gi|307192585|gb|EFN75773.1| Poly(A)-specific ribonuclease PARN [Harpegnathos saltator]
Length = 600
Score = 81.6 bits (200), Expect = 6e-14, Method: Composition-based stats.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 22 IKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTKR 81
++ A F+ ID EFTGLN+ P+T P+DT AQYY K+R GSM FLL+QFGL F Y++ TK+
Sbjct: 19 LQHATFICIDAEFTGLNSAPDTGPFDTLAQYYTKLRTGSMSFLLVQFGLSLFTYNSDTKK 78
>gi|148664948|gb|EDK97364.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_c [Mus musculus]
Length = 672
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 50/66 (75%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G++NGP+ T+ +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 65 QAIEEADFFAIDGEFSGISNGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 124
Query: 76 DNTTKR 81
D+T +
Sbjct: 125 DHTDSK 130
>gi|74141205|dbj|BAE35913.1| unnamed protein product [Mus musculus]
Length = 624
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 50/66 (75%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G++NGP+ T+ +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 17 QAIEEADFFAIDGEFSGISNGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 76
Query: 76 DNTTKR 81
D+T +
Sbjct: 77 DHTDSK 82
>gi|21311877|ref|NP_083037.1| poly(A)-specific ribonuclease PARN [Mus musculus]
gi|12835834|dbj|BAB23382.1| unnamed protein product [Mus musculus]
gi|26337129|dbj|BAC32249.1| unnamed protein product [Mus musculus]
Length = 624
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 50/66 (75%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G++NGP+ T+ +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 17 QAIEEADFFAIDGEFSGISNGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 76
Query: 76 DNTTKR 81
D+T +
Sbjct: 77 DHTDSK 82
>gi|395515097|ref|XP_003761743.1| PREDICTED: poly(A)-specific ribonuclease PARN [Sarcophilus
harrisii]
Length = 667
Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 5/80 (6%)
Query: 6 HPMILQHNITTRYAKAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSM 61
+P+ ++N+ Y +AI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SM
Sbjct: 22 NPVDFKNNLHKVY-QAIEEADFLAIDGEFSGISDGPSVTALTNGFDTPEERYHKLKKHSM 80
Query: 62 DFLLIQFGLCAFKYDNTTKR 81
DFLL QFGLC FKYD+T +
Sbjct: 81 DFLLFQFGLCTFKYDSTDSK 100
>gi|60390578|sp|Q8VDG3.1|PARN_MOUSE RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
gi|18256918|gb|AAH21899.1| Parn protein [Mus musculus]
Length = 624
Score = 77.8 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T+ +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 76
Query: 76 DNTTKR 81
D+T +
Sbjct: 77 DHTDSK 82
>gi|354468609|ref|XP_003496745.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1
[Cricetulus griseus]
Length = 625
Score = 77.8 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T+ +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 76
Query: 76 DNTTKR 81
D+T +
Sbjct: 77 DHTDSK 82
>gi|354468611|ref|XP_003496746.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2
[Cricetulus griseus]
Length = 633
Score = 77.4 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T+ +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 76
Query: 76 DNTTKR 81
D+T +
Sbjct: 77 DHTDSK 82
>gi|225698027|pdb|3D45|A Chain A, Crystal Structure Of Mouse Parn In Complex With M7gpppg
gi|225698028|pdb|3D45|B Chain B, Crystal Structure Of Mouse Parn In Complex With M7gpppg
Length = 507
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T+ +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 19 QAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 78
Query: 76 DNTTKR 81
D+T +
Sbjct: 79 DHTDSK 84
>gi|334333099|ref|XP_001375777.2| PREDICTED: poly(A)-specific ribonuclease PARN [Monodelphis
domestica]
Length = 709
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 49/66 (74%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFLAIDGEFSGISDGPSVTALTNGFDTPEERYHKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D+T +
Sbjct: 77 DSTDSK 82
>gi|328709367|ref|XP_001946252.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Acyrthosiphon
pisum]
Length = 631
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/62 (54%), Positives = 44/62 (70%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
+AI F+ IDGEFTGL+NG + +DT AQYY K+R MDFL++QFGLCA KY+
Sbjct: 17 QAIAECDFIAIDGEFTGLHNGTMVSIFDTAAQYYQKLRSNCMDFLMVQFGLCAVKYNTEK 76
Query: 80 KR 81
K+
Sbjct: 77 KK 78
>gi|301765382|ref|XP_002918111.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Ailuropoda
melanoleuca]
Length = 638
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 49/66 (74%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYKKLKKHSMDFLLFQFGLCAFKY 76
Query: 76 DNTTKR 81
D+T +
Sbjct: 77 DHTDSK 82
>gi|281340599|gb|EFB16183.1| hypothetical protein PANDA_006508 [Ailuropoda melanoleuca]
Length = 615
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 49/66 (74%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 10 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYKKLKKHSMDFLLFQFGLCAFKY 69
Query: 76 DNTTKR 81
D+T +
Sbjct: 70 DHTDSK 75
>gi|449277437|gb|EMC85602.1| Poly(A)-specific ribonuclease PARN, partial [Columba livia]
Length = 552
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 55/76 (72%), Gaps = 5/76 (6%)
Query: 10 LQHNITTRYAKAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLL 65
+ N+T Y +AI+ + F+ IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL
Sbjct: 3 FKDNLTKVY-EAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLL 61
Query: 66 IQFGLCAFKYDNTTKR 81
QFGLC FKYD+T ++
Sbjct: 62 FQFGLCTFKYDHTEEK 77
>gi|344292088|ref|XP_003417760.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1
[Loxodonta africana]
Length = 638
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D+T +
Sbjct: 77 DHTESK 82
>gi|393716306|ref|NP_001257344.1| poly(A)-specific ribonuclease PARN [Rattus norvegicus]
gi|306415570|gb|ADM86746.1| poly(A)-specific ribonuclease [Rattus norvegicus]
Length = 624
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 49/66 (74%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T+ +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 76
Query: 76 DNTTKR 81
D+ +
Sbjct: 77 DHANSK 82
>gi|291390633|ref|XP_002711808.1| PREDICTED: poly(A)-specific ribonuclease (deadenylation nuclease)
[Oryctolagus cuniculus]
Length = 638
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D+T +
Sbjct: 77 DHTDSK 82
>gi|149042528|gb|EDL96165.1| rCG49798 [Rattus norvegicus]
Length = 605
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 49/66 (74%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T+ +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 76
Query: 76 DNTTKR 81
D+ +
Sbjct: 77 DHANSK 82
>gi|73958883|ref|XP_536966.2| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Canis
lupus familiaris]
Length = 638
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AIK A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 EAIKEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|149725913|ref|XP_001490195.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 1
[Equus caballus]
Length = 637
Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP T +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPPVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|432108569|gb|ELK33278.1| Poly(A)-specific ribonuclease PARN [Myotis davidii]
Length = 604
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 46/61 (75%), Gaps = 4/61 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 118 QAIEEADFFAIDGEFSGISDGPSVTTLTNGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 177
Query: 76 D 76
D
Sbjct: 178 D 178
>gi|355709311|gb|AES03549.1| polyA-specific ribonuclease [Mustela putorius furo]
Length = 482
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 7 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 66
Query: 76 DNTTKR 81
D+T +
Sbjct: 67 DHTDSK 72
>gi|149610539|ref|XP_001516344.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial
[Ornithorhynchus anatinus]
Length = 296
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 5/76 (6%)
Query: 10 LQHNITTRYAKAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLL 65
+ N++ Y +AI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL
Sbjct: 16 FKKNLSKVY-QAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLL 74
Query: 66 IQFGLCAFKYDNTTKR 81
Q+GLC FKYD+T +
Sbjct: 75 FQYGLCTFKYDHTESK 90
>gi|224070057|ref|XP_002197536.1| PREDICTED: poly(A)-specific ribonuclease PARN [Taeniopygia
guttata]
Length = 638
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 49/66 (74%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ + F+ IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 EAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T ++
Sbjct: 77 DETEEK 82
>gi|410917870|ref|XP_003972409.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Takifugu rubripes]
Length = 559
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 4/65 (6%)
Query: 21 AIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
AI+ A F+ IDGEF+G+++GPN T DTP + Y K+++ SMDFLL QFGLC FKYD
Sbjct: 18 AIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKHSMDFLLFQFGLCTFKYD 77
Query: 77 NTTKR 81
T +
Sbjct: 78 QTKSK 82
>gi|194382480|dbj|BAG64410.1| unnamed protein product [Homo sapiens]
Length = 207
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|410985167|ref|XP_003998895.1| PREDICTED: poly(A)-specific ribonuclease PARN [Felis catus]
Length = 638
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|431910469|gb|ELK13541.1| Poly(A)-specific ribonuclease PARN [Pteropus alecto]
Length = 635
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 92 QAIEEADFFAIDGEFSGISDGPSVTTLTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 151
Query: 76 DNTTKR 81
D T +
Sbjct: 152 DYTDSK 157
>gi|417403544|gb|JAA48572.1| Putative polya-specific exoribonuclease parn [Desmodus rotundus]
Length = 638
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 46/61 (75%), Gaps = 4/61 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFLAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 D 76
D
Sbjct: 77 D 77
>gi|49115955|gb|AAH73682.1| Unknown (protein for IMAGE:5572400), partial [Xenopus laevis]
Length = 517
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
KAI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SM+FLL QFGLC F Y
Sbjct: 17 KAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHSMEFLLFQFGLCTFNY 76
Query: 76 DNTTKR 81
DNT +
Sbjct: 77 DNTEAK 82
>gi|115530723|emb|CAL49352.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
(Silurana) tropicalis]
Length = 519
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
KAI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SM+FLL QFGLC F Y
Sbjct: 17 KAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHSMEFLLFQFGLCTFNY 76
Query: 76 DNTTKR 81
DNT +
Sbjct: 77 DNTEAK 82
>gi|426381306|ref|XP_004057290.1| PREDICTED: poly(A)-specific ribonuclease PARN [Gorilla gorilla
gorilla]
Length = 634
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|60390587|sp|Q90ZA1.1|PARN_XENLA RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName:
Full=Deadenylation nuclease; AltName:
Full=Polyadenylate-specific ribonuclease; AltName:
Full=parn-A
gi|14495249|gb|AAK64218.1|AF309688_1 poly(A)-specific ribonuclease [Xenopus laevis]
Length = 631
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
KAI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SM+FLL QFGLC F Y
Sbjct: 17 KAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHSMEFLLFQFGLCTFNY 76
Query: 76 DNTTKR 81
DNT +
Sbjct: 77 DNTEAK 82
>gi|197246532|gb|AAI69159.1| Unknown (protein for IMAGE:8898488) [Xenopus (Silurana)
tropicalis]
Length = 525
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
KAI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SM+FLL QFGLC F Y
Sbjct: 17 KAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHSMEFLLFQFGLCTFNY 76
Query: 76 DNTTKR 81
DNT +
Sbjct: 77 DNTEAK 82
>gi|148236825|ref|NP_001081143.1| poly(A)-specific ribonuclease PARN [Xenopus laevis]
gi|46329632|gb|AAH68919.1| Parn-A protein [Xenopus laevis]
Length = 631
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
KAI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SM+FLL QFGLC F Y
Sbjct: 17 KAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHSMEFLLFQFGLCTFNY 76
Query: 76 DNTTKR 81
DNT +
Sbjct: 77 DNTEAK 82
>gi|155371965|ref|NP_001094588.1| poly(A)-specific ribonuclease PARN [Bos taurus]
gi|223590122|sp|P69341.2|PARN_BOVIN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName:
Full=Deadenylation nuclease; AltName:
Full=Polyadenylate-specific ribonuclease
gi|151556271|gb|AAI50016.1| PARN protein [Bos taurus]
gi|296473404|tpg|DAA15519.1| TPA: poly(A)-specific ribonuclease PARN [Bos taurus]
Length = 638
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|308235956|ref|NP_001184102.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
(Silurana) tropicalis]
Length = 632
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
KAI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SM+FLL QFGLC F Y
Sbjct: 17 KAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHSMEFLLFQFGLCTFNY 76
Query: 76 DNTTKR 81
DNT +
Sbjct: 77 DNTEAK 82
>gi|327287978|ref|XP_003228705.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial
[Anolis carolinensis]
Length = 593
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 50/71 (70%), Gaps = 5/71 (7%)
Query: 10 LQHNITTRYAKAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLL 65
+ N+ YA AI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL
Sbjct: 8 FKDNLNKVYA-AIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLL 66
Query: 66 IQFGLCAFKYD 76
QFGLC FKYD
Sbjct: 67 FQFGLCTFKYD 77
>gi|440896814|gb|ELR48641.1| Poly(A)-specific ribonuclease PARN, partial [Bos grunniens mutus]
Length = 617
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 12 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 71
Query: 76 DNTTKR 81
D T +
Sbjct: 72 DYTDSK 77
>gi|402907752|ref|XP_003916630.1| PREDICTED: poly(A)-specific ribonuclease PARN [Papio anubis]
Length = 621
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|380813232|gb|AFE78490.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
gi|383411569|gb|AFH28998.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
gi|384943224|gb|AFI35217.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
Length = 639
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|355756570|gb|EHH60178.1| Poly(A)-specific ribonuclease PARN, partial [Macaca fascicularis]
Length = 634
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 12 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 71
Query: 76 DNTTKR 81
D T +
Sbjct: 72 DYTDSK 77
>gi|348584110|ref|XP_003477815.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 1
[Cavia porcellus]
Length = 637
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 7/80 (8%)
Query: 9 ILQHNITTRYAK---AIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSM 61
I+++N + K AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SM
Sbjct: 3 IIRNNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSM 62
Query: 62 DFLLIQFGLCAFKYDNTTKR 81
DFLL QFGLC FKYD T +
Sbjct: 63 DFLLFQFGLCTFKYDCTDSK 82
>gi|296219599|ref|XP_002755955.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1
[Callithrix jacchus]
Length = 639
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|397525565|ref|XP_003832732.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Pan
paniscus]
Length = 639
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|197102834|ref|NP_001125357.1| poly(A)-specific ribonuclease PARN [Pongo abelii]
gi|60390294|sp|Q5RC51.1|PARN_PONAB RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
gi|55727812|emb|CAH90659.1| hypothetical protein [Pongo abelii]
Length = 639
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|355709980|gb|EHH31444.1| Poly(A)-specific ribonuclease PARN, partial [Macaca mulatta]
Length = 634
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 12 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 71
Query: 76 DNTTKR 81
D T +
Sbjct: 72 DYTDSK 77
>gi|332845316|ref|XP_510832.3| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Pan
troglodytes]
Length = 639
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|4505611|ref|NP_002573.1| poly(A)-specific ribonuclease PARN isoform 1 [Homo sapiens]
gi|60390262|sp|O95453.1|PARN_HUMAN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName:
Full=Deadenylation nuclease; AltName:
Full=Polyadenylate-specific ribonuclease
gi|3776076|emb|CAA06683.1| poly(A)-specific ribonuclease [Homo sapiens]
gi|29477165|gb|AAH50029.1| PARN protein [Homo sapiens]
gi|119605516|gb|EAW85110.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_a [Homo sapiens]
gi|189054660|dbj|BAG37510.1| unnamed protein product [Homo sapiens]
gi|325463607|gb|ADZ15574.1| poly(A)-specific ribonuclease (deadenylation nuclease) [synthetic
construct]
Length = 639
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|332240351|ref|XP_003269351.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Nomascus
leucogenys]
Length = 639
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|85544056|pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
gi|85544057|pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
gi|85544060|pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
gi|85544061|pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
gi|85544062|pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
gi|85544063|pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
Length = 430
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|47218930|emb|CAF98128.1| unnamed protein product [Tetraodon nigroviridis]
Length = 614
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 4/65 (6%)
Query: 21 AIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
AI+ A F+ IDGEF+G+++GPN T DTP + Y K+++ SMDFLL QFG+C FKYD
Sbjct: 13 AIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKHSMDFLLFQFGVCTFKYD 72
Query: 77 NTTKR 81
T +
Sbjct: 73 QTKSK 77
>gi|410217846|gb|JAA06142.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410256666|gb|JAA16300.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410287506|gb|JAA22353.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410350583|gb|JAA41895.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410350585|gb|JAA41896.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
Length = 639
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FK+
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKF 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>gi|348540666|ref|XP_003457808.1| PREDICTED: poly(A)-specific ribonuclease PARN [Oreochromis
niloticus]
Length = 679
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 4/65 (6%)
Query: 21 AIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
AI+ A F+ IDGEF+G+++GPN T DTP + Y K+++ SMDFLL QFGLC FKYD
Sbjct: 18 AIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKHSMDFLLFQFGLCTFKYD 77
Query: 77 NTTKR 81
+
Sbjct: 78 QAKSK 82
>gi|41055217|ref|NP_957382.1| poly(A)-specific ribonuclease PARN [Danio rerio]
gi|29791562|gb|AAH50496.1| Zgc:56067 [Danio rerio]
Length = 647
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 45/60 (75%), Gaps = 4/60 (6%)
Query: 21 AIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
A++ A F++IDGEFTG+++GP+ T DTP + Y K+R+ SM+FLL QFG+C F+YD
Sbjct: 18 AVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHSMNFLLFQFGVCTFRYD 77
>gi|60390548|sp|Q7ZU92.2|PARN_DANRE RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
Length = 660
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 45/60 (75%), Gaps = 4/60 (6%)
Query: 21 AIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
A++ A F++IDGEFTG+++GP+ T DTP + Y K+R+ SM+FLL QFG+C F+YD
Sbjct: 18 AVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHSMNFLLFQFGVCTFRYD 77
>gi|261335987|emb|CBH09267.1| putative poly(A)-specific ribonuclease (parn) [Heliconius
melpomene]
Length = 624
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 19 AKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNT 78
++I A F+ ID EFTGL NG N + +D+P +YY+ + GS DFLLIQ+GLCAF +++
Sbjct: 16 GESIAKADFLVIDTEFTGLINGRNVSMFDSPQEYYNTLLNGSTDFLLIQYGLCAFYWNDE 75
Query: 79 TK 80
K
Sbjct: 76 EK 77
>gi|37681897|gb|AAQ97826.1| poly(A)-specific ribonuclease [Danio rerio]
Length = 660
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 45/60 (75%), Gaps = 4/60 (6%)
Query: 21 AIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
A++ A F++IDGEFTG+++GP+ T DTP + Y K+R+ SM+FLL QFG+C F+YD
Sbjct: 18 AVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHSMNFLLFQFGVCTFRYD 77
>gi|237649000|ref|NP_001153677.1| poly(A)-specific ribonuclease [Bombyx mori]
gi|224176033|dbj|BAH23570.1| similar to poly(A)-specific ribonuclease, PARN [Bombyx mori]
Length = 628
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 45/62 (72%)
Query: 19 AKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNT 78
A ++K A F+ ID EFTG+ NG + + +DTP +YY ++GS +FLLIQFGLCAF +++
Sbjct: 16 AASVKKADFLVIDTEFTGIINGRDVSMFDTPEEYYKCTQRGSSEFLLIQFGLCAFHWNHK 75
Query: 79 TK 80
K
Sbjct: 76 EK 77
>gi|443429421|gb|AGC92706.1| poly(A)-specific ribonuclease PARN-like protein [Heliconius
erato]
Length = 586
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 19 AKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNT 78
++I A F+ ID EFTGL NG + + +D+P +YY+ + GS DFLLIQ+GLCAF +++
Sbjct: 16 GESIAKADFLVIDTEFTGLINGRDVSMFDSPQEYYNTLLNGSTDFLLIQYGLCAFYWNDE 75
Query: 79 TK 80
K
Sbjct: 76 EK 77
>gi|357629823|gb|EHJ78364.1| putative poly [Danaus plexippus]
Length = 616
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 21 AIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTK 80
+I++A F+ ID EFTGL +G + + +D+P +YY + G+ DFLLIQFGLC F +D K
Sbjct: 18 SIQAADFLAIDTEFTGLMSGRDVSMFDSPPEYYATLLNGTADFLLIQFGLCTFYWDEKEK 77
Query: 81 R 81
+
Sbjct: 78 Q 78
>gi|157118661|ref|XP_001659202.1| poly(a)-specific ribonuclease (deadenylation nuclease) [Aedes
aegypti]
gi|108883264|gb|EAT47489.1| AAEL001426-PA [Aedes aegypti]
Length = 582
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
+ I+ A F IDGEFTGL + N P+DTP + Y K S DF++IQ GLCAF+ D
Sbjct: 17 QTIREASFFAIDGEFTGLTSDRNVLPFDTPEEVYLKTIDNSADFVIIQLGLCAFRVD 73
>gi|189240485|ref|XP_967921.2| PREDICTED: similar to Parn-A protein [Tribolium castaneum]
gi|270011407|gb|EFA07855.1| hypothetical protein TcasGA2_TC005425 [Tribolium castaneum]
Length = 584
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
K I S+ F+ ID EF+GLN +DTP QYY+K+R+ +FL++Q+G+ AF++D +
Sbjct: 17 KVINSSTFLAIDCEFSGLNVVSEINAFDTPKQYYEKVRKNCKEFLVLQYGISAFRFDASE 76
Query: 80 K 80
K
Sbjct: 77 K 77
>gi|390350398|ref|XP_785661.3| PREDICTED: poly(A)-specific ribonuclease PARN-like
[Strongylocentrotus purpuratus]
Length = 643
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 19 AKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNT 78
+ A+ FV IDGEFTGL++G + +DTPA+ Y +++ DFLLIQ G+C FKY+
Sbjct: 16 SSALDHCSFVAIDGEFTGLHSGSSPGVFDTPAERYQHLKENCCDFLLIQLGVCIFKYEKQ 75
Query: 79 TK 80
K
Sbjct: 76 KK 77
>gi|427786977|gb|JAA58940.1| Putative polya-specific ribonuclease parn [Rhipicephalus
pulchellus]
Length = 637
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 21 AIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTK 80
A+++A FV ID EFTGL +T YDTP + Y K+R+ S+DFL++Q G+C F++D +
Sbjct: 18 ALENASFVAIDCEFTGLELERSTHAYDTPEERYRKLRESSLDFLVVQVGVCVFQHDKEKR 77
>gi|351701243|gb|EHB04162.1| Poly(A)-specific ribonuclease PARN, partial [Heterocephalus
glaber]
Length = 617
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQY-YDKIRQGSMDFLLIQFGLCAFK 74
+AI+ A F IDGEF+G+++GP+ T +DTP + + + Q SMDFLL QFGLC FK
Sbjct: 12 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERCFISLFQHSMDFLLFQFGLCTFK 71
Query: 75 YDNTTKR 81
YD T +
Sbjct: 72 YDYTDSK 78
>gi|119605517|gb|EAW85111.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_b [Homo sapiens]
Length = 640
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQY-YDKIRQGSMDFLLIQFGLCAFK 74
+AI+ A F IDGEF+G+++GP+ T +DTP + + + Q SMDFLL QFGLC FK
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERCFISLFQHSMDFLLFQFGLCTFK 76
Query: 75 YDNTTKR 81
YD T +
Sbjct: 77 YDYTDSK 83
>gi|198418498|ref|XP_002129059.1| PREDICTED: similar to poly(A)-specific ribonuclease [Ciona
intestinalis]
Length = 642
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 19 AKAIKSALFVTIDGEFTGLNNGP-NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
+KAI + F+ IDGEFTGL N N T YD+P + Y K+ + +F+L+QFG+C F +
Sbjct: 16 SKAIDESSFICIDGEFTGLTNHRYNLTSYDSPEERYLKLHSNTENFMLLQFGMCTFSWKE 75
Query: 78 TTKR 81
++
Sbjct: 76 DEQK 79
>gi|312375716|gb|EFR23028.1| hypothetical protein AND_13786 [Anopheles darlingi]
Length = 330
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
KAI+ A F ID EFTGL + P+DTP + Y K + + ++++QFGLCAF+ +
Sbjct: 20 KAIREASFFAIDCEFTGLASDRLIFPFDTPEEVYQKTVEANTQYIIVQFGLCAFRVE 76
>gi|321455833|gb|EFX66955.1| hypothetical protein DAPPUDRAFT_203845 [Daphnia pulex]
Length = 582
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGPNT--TPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
++ A F+ ID EFTGLN+G + + DTPA+ Y K+ GS +FL++QFGL F ++
Sbjct: 19 LEKASFIAIDTEFTGLNDGGSNKLSSLDTPAERYKKVLNGSSEFLVVQFGLSIFTFEKKV 78
Query: 80 KR 81
+
Sbjct: 79 SK 80
>gi|158285726|ref|XP_308433.4| AGAP007399-PA [Anopheles gambiae str. PEST]
gi|157020132|gb|EAA04629.5| AGAP007399-PA [Anopheles gambiae str. PEST]
Length = 631
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74
+AI++A F +D EFTGL + P+DTP + Y K+ + S ++++QFGLCAF+
Sbjct: 17 EAIQNATFFAMDCEFTGLASDRTIFPFDTPEEVYLKMVENSPPYIIVQFGLCAFR 71
>gi|156388175|ref|XP_001634577.1| predicted protein [Nematostella vectensis]
gi|156221661|gb|EDO42514.1| predicted protein [Nematostella vectensis]
Length = 640
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 19 AKAIKSALFVTIDGEFTGLNNG-PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
++AI+ A F+ +D EF+GLN+ D+P + Y K++ S DF+++QFGLCAF ++
Sbjct: 58 SEAIEEASFLAVDAEFSGLNSHWKQQNALDSPQERYTKLKNTSHDFIIVQFGLCAFIWNE 117
Query: 78 TTKR 81
+
Sbjct: 118 NLNK 121
>gi|443698080|gb|ELT98249.1| hypothetical protein CAPTEDRAFT_110937 [Capitella teleta]
Length = 121
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 19 AKAIKSALFVTIDGEFTG----------LNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQF 68
++AI+ A FV+ID E TG + +G + DTP Y+K+RQG+M F +IQF
Sbjct: 21 SQAIQDASFVSIDCEMTGDSLLTSLLCLIQSGFESHWMDTPEDRYNKLRQGAMPFNVIQF 80
Query: 69 GLCAFKYDNTTKR 81
GLC F +K+
Sbjct: 81 GLCTFNKKEDSKQ 93
>gi|156351496|ref|XP_001622538.1| hypothetical protein NEMVEDRAFT_v1g1365 [Nematostella vectensis]
gi|156209100|gb|EDO30438.1| predicted protein [Nematostella vectensis]
Length = 459
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 19 AKAIKSALFVTIDGEFTGLNNG-PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
++AI+ A F+ +D EF+GLN+ D+P + Y K++ S DF+++QFGLCAF ++
Sbjct: 16 SEAIEEASFLAVDAEFSGLNSHWKQQNALDSPQERYTKLKNTSHDFIIVQFGLCAFIWNE 75
Query: 78 TTKR 81
+
Sbjct: 76 NLNK 79
>gi|443696772|gb|ELT97394.1| hypothetical protein CAPTEDRAFT_177560 [Capitella teleta]
Length = 612
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 19 AKAIKSALFVTIDGEFTG----------LNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQF 68
++AI+ A FV+ID E TG + +G + DTP Y+K+RQG+M F +IQF
Sbjct: 21 SQAIQDASFVSIDCEMTGDSLLTSFLCLIQSGFESHWMDTPEDRYNKLRQGAMPFNVIQF 80
Query: 69 GLCAFKYDNTTKR 81
GLC F +K+
Sbjct: 81 GLCTFNKKEDSKQ 93
>gi|195999750|ref|XP_002109743.1| hypothetical protein TRIADDRAFT_52927 [Trichoplax adhaerens]
gi|190587867|gb|EDV27909.1| hypothetical protein TRIADDRAFT_52927 [Trichoplax adhaerens]
Length = 511
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGPNTT--PYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
I A FV +DGEFTG+N+ + +++PAQ Y KI + +FL+IQ GLC F
Sbjct: 34 INKAAFVALDGEFTGINSDESRAFDMFESPAQRYKKISKIVQNFLMIQCGLCVF 87
>gi|384490758|gb|EIE81980.1| hypothetical protein RO3G_06685 [Rhizopus delemar RA 99-880]
Length = 622
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTP--AQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
+A+ A F+++D EFTGL PN + T Q Y+KI+ +F +IQ+G+CAFK D
Sbjct: 17 EALLEADFISVDAEFTGLT-PPNIQMFQTDDLTQRYNKIKSCVQEFTIIQYGVCAFKRDK 75
Query: 78 TT 79
T
Sbjct: 76 ET 77
>gi|390345831|ref|XP_003726420.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Strongylocentrotus
purpuratus]
Length = 536
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN--TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF-KYD 76
++I+ + F+ ID EFTGL+ + + +DTPAQ Y+K+R+ +M + + Q G+ AF K
Sbjct: 17 QSIQDSSFIAIDTEFTGLHATQSDINSLFDTPAQRYEKLRRMAMQYTICQLGVSAFVKVP 76
Query: 77 NT 78
NT
Sbjct: 77 NT 78
>gi|78484343|dbj|BAE47488.1| polyA specific ribonuclease [Arabidopsis thaliana]
Length = 131
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
+K+A FV ID E TG+ + P ++ +D Y K++ + F ++QFG+C F++D+ T
Sbjct: 57 VKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRT 116
Query: 80 K 80
+
Sbjct: 117 Q 117
>gi|391342764|ref|XP_003745685.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Metaseiulus
occidentalis]
Length = 747
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 12 HNITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLC 71
+++ + +AI+ F ID EFTGL P DT AQ Y K+R G ++L++QFGL
Sbjct: 126 NDLKPQIEEAIEKCSFAAIDCEFTGLVLPEPLHPLDTVAQRYQKLRVGISEYLVVQFGLS 185
Query: 72 AFKYD 76
+ +D
Sbjct: 186 LWTFD 190
>gi|328767409|gb|EGF77459.1| hypothetical protein BATDEDRAFT_36029 [Batrachochytrium
dendrobatidis JAM81]
Length = 581
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNT--TPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
+AI++A F+ +D EFTGL PN + DTP + Y K R + F IQ GL AFK+D
Sbjct: 17 EAIENADFIAVDTEFTGLGLTPNERLSLLDTPQERYLKHRSAARLFEPIQIGLAAFKWD 75
>gi|320165859|gb|EFW42758.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 813
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNN--GPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI FV ID EFTGL++ + +DT A+ Y K+R+ + F ++Q+G+CAF++
Sbjct: 17 QAIAKCDFVAIDAEFTGLHSERAAASNHFDTLAERYAKVRRSASQFGVLQYGVCAFRW 74
>gi|403373024|gb|EJY86423.1| hypothetical protein OXYTRI_13677 [Oxytricha trifallax]
Length = 681
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 20 KAIKSALFVTIDGEFTGL--NNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
K ++ A F+ ID EF+GL N DT AQ Y K ++ F+ IQ G+CAFKY +
Sbjct: 17 KNLQEADFIAIDFEFSGLLQNQQNANQASDTIAQRYWKNKESVRKFMPIQMGICAFKYTH 76
Query: 78 TTKR 81
+K+
Sbjct: 77 DSKK 80
>gi|240254280|ref|NP_175983.5| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
gi|60390594|sp|Q9LG26.2|PARN_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease; Short=AtPARN;
AltName: Full=Protein ABA hypersensitive germination 2
gi|65736526|dbj|BAD98514.1| poly(A)-specific ribonuclease [Arabidopsis thaliana]
gi|332195190|gb|AEE33311.1| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
Length = 689
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
+K+A FV ID E TG+ + P ++ +D Y K++ + F ++QFG+C F++D+ T
Sbjct: 57 VKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRT 116
Query: 80 K 80
+
Sbjct: 117 Q 117
>gi|297847952|ref|XP_002891857.1| Poly(A)-specific ribonuclease [Arabidopsis lyrata subsp. lyrata]
gi|297337699|gb|EFH68116.1| Poly(A)-specific ribonuclease [Arabidopsis lyrata subsp. lyrata]
Length = 689
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
+K+A FV ID E TG+ + P ++ +D Y K++ + F ++QFG+C F++D+ T
Sbjct: 57 VKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRT 116
Query: 80 K 80
+
Sbjct: 117 Q 117
>gi|8778305|gb|AAF79314.1|AC002304_7 F14J16.11 [Arabidopsis thaliana]
Length = 660
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
+K+A FV ID E TG+ + P ++ +D Y K++ + F ++QFG+C F++D+ T
Sbjct: 116 VKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRT 175
Query: 80 K 80
+
Sbjct: 176 Q 176
>gi|332020023|gb|EGI60474.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1 [Acromyrmex echinatior]
Length = 607
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 20 KAIKSALFVTIDGEFTGLNNGP-NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74
+ +K+A F+ IDGEFTG+ +G + +D+ + Y+K R +++IQFG+ AF+
Sbjct: 18 RTLKNANFIAIDGEFTGIESGDVRNSLFDSIYERYEKNRSHIQPYIIIQFGISAFQ 73
>gi|440801121|gb|ELR22146.1| ribonuclease, putative [Acanthamoeba castellanii str. Neff]
Length = 546
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
+AI ++ F++ D EFTGL G + P D + Y K+++ S F + QFGL AF +D
Sbjct: 17 EAIAASDFLSFDLEFTGLTLGGYLDNHPVDLLEERYKKLKENSSAFTITQFGLSAFTWDA 76
Query: 78 TTKR 81
T +
Sbjct: 77 TENK 80
>gi|242009862|ref|XP_002425701.1| poly A-specific ribonuclease,putative [Pediculus humanus
corporis]
gi|212509602|gb|EEB12963.1| poly A-specific ribonuclease,putative [Pediculus humanus
corporis]
Length = 500
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 14 ITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
I + + +KS F++ID EF+GL N D+P + Y K+R D +IQ G+ F
Sbjct: 12 ILPQIEEELKSCSFISIDCEFSGLFTQRNCL-LDSPKERYMKLRSAVQDISIIQMGITLF 70
Query: 74 KYDN 77
K+DN
Sbjct: 71 KFDN 74
>gi|302835828|ref|XP_002949475.1| hypothetical protein VOLCADRAFT_120753 [Volvox carteri f.
nagariensis]
gi|300265302|gb|EFJ49494.1| hypothetical protein VOLCADRAFT_120753 [Volvox carteri f.
nagariensis]
Length = 570
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21 AIKSALFVTIDGEFTGL-NNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
AI A FV ID EFTGL G + P D + Y ++ + +F + QFGL AFK+
Sbjct: 64 AIHEATFVAIDAEFTGLFPEGVSEDPLDDYEERYKRLLASADNFAICQFGLSAFKW 119
>gi|384488069|gb|EIE80249.1| hypothetical protein RO3G_04954 [Rhizopus delemar RA 99-880]
Length = 747
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
+AIK + ID E +GL+ N + Y + ++ + F++IQFGLC FK+D ++
Sbjct: 215 EAIKECDVIAIDTELSGLHRPLNNKRLYSLQDRYIEYKEATERFIVIQFGLCTFKWDASS 274
Query: 80 KR 81
R
Sbjct: 275 GR 276
>gi|328785451|ref|XP_623432.3| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Apis mellifera]
Length = 535
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 9 ILQHNITTRYAK---AIKSALFVTIDGEFTGLNNGPNT--TPYDTPAQYYDKIRQGSMDF 63
+L+ N T Y K A+ +A F+ ID EFTGL + + +D+ Y +++ F
Sbjct: 4 VLKTNFKTLYPKLEIAVNNATFIAIDAEFTGLYSEEKLKHSFFDSFNDRYKLLKKNIQQF 63
Query: 64 LLIQFGLCAFK---YDNTTK 80
++IQFG+ F+ Y+NT K
Sbjct: 64 MIIQFGIATFRHVPYENTYK 83
>gi|363731664|ref|XP_426152.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Gallus gallus]
Length = 577
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 30 IDGEFTGL------NNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTK 80
+D EFTGL NN P+ +D+PA+ Y K+RQ F + Q GL F +N+ K
Sbjct: 72 LDMEFTGLHSAFPQNNQPSL--FDSPAERYQKVRQSVQRFTITQLGLAIFSEENSNK 126
>gi|380022861|ref|XP_003695254.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Apis
florea]
Length = 633
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 9 ILQHNITTRYAK---AIKSALFVTIDGEFTGLNNGPNT--TPYDTPAQYYDKIRQGSMDF 63
+L N T Y K A+ +A F+ ID EFTGL + + +D+ Y +++ F
Sbjct: 4 VLNKNFKTLYPKLENAVNNATFIAIDAEFTGLYSEEKLKHSFFDSFNDRYKLLKKNIQQF 63
Query: 64 LLIQFGLCAFK---YDNTTK 80
++IQFG+ F+ Y+NT K
Sbjct: 64 MIIQFGIATFRHVPYENTYK 83
>gi|298707724|emb|CBJ26041.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 705
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 20 KAIKSALFVTIDGEFTGLN--NGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
+AI+S+ F+ +D EFTGL D+ YD R F+L Q+G+C F+Y +
Sbjct: 17 EAIRSSHFIALDTEFTGLRLPGAAREKMMDSVQARYDLARGSCSQFMLTQYGICCFRYHD 76
>gi|303275732|ref|XP_003057160.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461512|gb|EEH58805.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 285
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 29 TIDGEFTGLNNGPNTT--PYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTKR 81
+ D EFTGLN G +T DTP + + K+ F ++Q+G+C F +D ++R
Sbjct: 92 SFDCEFTGLNAGAHTVFDLLDTPEERFRKVHACVRAFAVLQYGVCTFHFDPRSRR 146
>gi|346464857|gb|AEO32273.1| hypothetical protein [Amblyomma maculatum]
Length = 498
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 30 IDGEFTGLNNGPNTTP--YDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
ID EFTGL +GP+ TP +D+ + Y K+R ++ + Q G+C F
Sbjct: 28 IDTEFTGLVSGPDATPSLFDSIEERYAKLRHTVTNYYVCQLGICTF 73
>gi|302774905|ref|XP_002970869.1| hypothetical protein SELMODRAFT_451150 [Selaginella moellendorffii]
gi|300161580|gb|EFJ28195.1| hypothetical protein SELMODRAFT_451150 [Selaginella moellendorffii]
Length = 648
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 RYAKAIKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74
R ++ A FV +D E +G+++ P + DT Y +R + F L+Q GLC F+
Sbjct: 44 RLKGLLREADFVAMDLEMSGVHSAPWRKSMELDTLETRYHNVRDSAEKFSLLQCGLCLFR 103
Query: 75 YDNTTKR 81
YD + +
Sbjct: 104 YDQASSK 110
>gi|302772366|ref|XP_002969601.1| hypothetical protein SELMODRAFT_410403 [Selaginella moellendorffii]
gi|300163077|gb|EFJ29689.1| hypothetical protein SELMODRAFT_410403 [Selaginella moellendorffii]
Length = 648
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 17 RYAKAIKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74
R ++ A FV +D E +G+++ P + DT Y +R + F L+Q GLC F+
Sbjct: 44 RLKGLLRDADFVAMDLEMSGVHSAPWRKSMELDTLETRYHNVRDSAEKFSLLQCGLCLFR 103
Query: 75 YDNTTKR 81
YD + +
Sbjct: 104 YDQASSK 110
>gi|356569615|ref|XP_003552994.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 714
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
+ ++++ FV ID E TG+ + P +D Y K+R + F ++QFG+C F++D
Sbjct: 51 RHVRTSDFVAIDLEMTGVTSAPWRELLEFDRSDVRYLKVRDSATKFAVVQFGVCPFRWD 109
>gi|356524370|ref|XP_003530802.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 718
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
++ + FV ID E TG+ + P + +D Y K+R + F ++QFG+C F++D
Sbjct: 53 VRCSDFVAIDLEMTGVTSAPWRESLAFDRSDVRYLKVRDSAAKFAVVQFGVCPFRWD 109
>gi|390462231|ref|XP_002806785.2| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1 [Callithrix
jacchus]
Length = 510
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 27 FVTIDGEFTGLNN---GPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 24 FVGLDIEFTGLRSNLSGPQISLFDLPSEWYLKTRQSVQQFTICQIGLSMF 73
>gi|255563538|ref|XP_002522771.1| conserved hypothetical protein [Ricinus communis]
gi|223538009|gb|EEF39622.1| conserved hypothetical protein [Ricinus communis]
Length = 699
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 3 PTQHPMILQHNITTRYA---KAIKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIR 57
P +H +++ N + A + + +A F+ ID E TG+ P + YD Y K++
Sbjct: 31 PLKH--VVKSNFNSSLADLKRHVIAADFIAIDLEMTGITTAPWRESFEYDRFDVRYLKVK 88
Query: 58 QGSMDFLLIQFGLCAFKYDN 77
+ F ++QFG+C F++D+
Sbjct: 89 DSAEKFAVVQFGVCPFRWDS 108
>gi|328717201|ref|XP_001944100.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Acyrthosiphon
pisum]
Length = 534
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 21 AIKSALFVTIDGEFTGL--NNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNT 78
AIK F+++D EF+ L N + +DT + Y+K+ Q D IQFG+ + YD+
Sbjct: 19 AIKECAFISLDMEFSKLFDNISKPFSLFDTTEERYNKLHQKVSDITCIQFGMAIYVYDDK 78
Query: 79 TK 80
K
Sbjct: 79 IK 80
>gi|325191502|emb|CCA26275.1| Poly(A)specific ribonuclease PARNlike protein putati [Albugo
laibachii Nc14]
Length = 713
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 4 TQHPM----ILQHNITTRYAKAIKSAL-----FVTIDGEFTGLNNGPNTTPY--DTPAQY 52
T HP + +HN T + + KS L F+ ID EFTGL + + DT +
Sbjct: 41 TSHPSFAMNVTRHNFETSFQQVKKSILSDSCKFIAIDTEFTGLCFKEASKEWYLDTLEER 100
Query: 53 YDKIRQGSMDFLLIQFGL 70
Y K++Q +FL+ QFGL
Sbjct: 101 YQKLKQTGENFLVSQFGL 118
>gi|224061228|ref|XP_002300380.1| predicted protein [Populus trichocarpa]
gi|222847638|gb|EEE85185.1| predicted protein [Populus trichocarpa]
Length = 675
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 3 PTQHPMILQHNITTRYAKA---IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIR 57
P +H + Q N T A +K+A FV ID E TG+ + P + +D Y K++
Sbjct: 26 PLKH--VTQSNFETAVADLKTHLKAADFVAIDLEMTGVTSAPWRESLEFDRFDVKYLKVK 83
Query: 58 QGSMDFLLIQFGLCAFKYD 76
+ F ++Q G+C F++D
Sbjct: 84 DSAEKFAVVQLGVCPFRWD 102
>gi|147799285|emb|CAN76999.1| hypothetical protein VITISV_007764 [Vitis vinifera]
Length = 720
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
+ ++ A FV ID E TG+ + P + +D Y K++ + F ++QFG+C F++D+
Sbjct: 57 RHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKDSAEKFAVVQFGVCPFRWDS 116
Query: 78 T 78
+
Sbjct: 117 S 117
>gi|296089929|emb|CBI39748.3| unnamed protein product [Vitis vinifera]
Length = 715
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
+ ++ A FV ID E TG+ + P + +D Y K++ + F ++QFG+C F++D+
Sbjct: 57 RHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKDSAEKFAVVQFGVCPFRWDS 116
Query: 78 T 78
+
Sbjct: 117 S 117
>gi|225461941|ref|XP_002266069.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Vitis vinifera]
Length = 734
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
+ ++ A FV ID E TG+ + P + +D Y K++ + F ++QFG+C F++D+
Sbjct: 57 RHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKDSAEKFAVVQFGVCPFRWDS 116
Query: 78 T 78
+
Sbjct: 117 S 117
>gi|145538409|ref|XP_001454910.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422687|emb|CAK87513.1| unnamed protein product [Paramecium tetraurelia]
Length = 516
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
+ IK F+ D E TG+ T + P + Y KIR+ SM + +IQFGLC F
Sbjct: 17 EQIKLCDFLGFDLELTGIKGEYQDTFEELPFERYLKIRKVSMKYNIIQFGLCIF 70
>gi|168019851|ref|XP_001762457.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686190|gb|EDQ72580.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 594
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 14/70 (20%)
Query: 21 AIKSALFVTIDGEFTGLN--------------NGPNTTPYDTPAQYYDKIRQGSMDFLLI 66
AI S F+ IDGEF+GL + D Q Y ++R + FL++
Sbjct: 18 AISSCQFIAIDGEFSGLTLTHPRFKGALISITDSRREEVLDDAEQLYARVRTSAQHFLIM 77
Query: 67 QFGLCAFKYD 76
QFGL AF ++
Sbjct: 78 QFGLSAFHWN 87
>gi|340504551|gb|EGR30984.1| hypothetical protein IMG5_120000 [Ichthyophthirius multifiliis]
Length = 540
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNT--TPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
+ IK + +++ID EFTGL + YDT Q Y ++ DF IQ GLC F+ N
Sbjct: 448 QCIKKSNYISIDFEFTGLYRHYDLIYNKYDTIQQRYFATKENIKDFQPIQLGLCCFQIHN 507
Query: 78 TTK 80
K
Sbjct: 508 NEK 510
>gi|255088137|ref|XP_002505991.1| ribonuclease [Micromonas sp. RCC299]
gi|226521262|gb|ACO67249.1| ribonuclease [Micromonas sp. RCC299]
Length = 832
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFV--TIDGEFTGLNNGPNTTP--YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI LF + D EFTGLN P T DTP + + K+ F ++Q G+ F +
Sbjct: 17 EAIDDPLFAFWSFDCEFTGLNASPTTGHDLLDTPEERFAKVHACVRAFTVLQVGVAIFSF 76
Query: 76 DNTTKR 81
D T+R
Sbjct: 77 DPHTRR 82
>gi|307174505|gb|EFN64967.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1 [Camponotus floridanus]
Length = 509
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 9 ILQHNITTRYA---KAIKSALFVTIDGEFTGLN-NGPNTTPYDTPAQYYDKIRQGSMDFL 64
+ N T Y + +K+A F+ ID E TGLN + + +D+ + Y+K R ++
Sbjct: 4 VTNENFNTIYPHLERTLKNASFIAIDTELTGLNVDDVKNSLFDSINERYEKQRSSIQPYI 63
Query: 65 LIQFGLCAFK 74
+IQFG+ AF+
Sbjct: 64 IIQFGITAFQ 73
>gi|426254331|ref|XP_004020832.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Ovis
aries]
Length = 463
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQ 58
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKK 59
>gi|443682487|gb|ELT87068.1| hypothetical protein CAPTEDRAFT_222843 [Capitella teleta]
Length = 590
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 20 KAIKSALFVTIDGEFTGLN-NGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNT 78
K+I A FV ID EFTGL+ G + +D+ A Y K+R+ F+ Q G+ AF D
Sbjct: 68 KSIFEADFVAIDCEFTGLHLPGEGPSLFDSGADRYAKLRRAVQAFMPSQIGISAFVRDKN 127
Query: 79 T 79
+
Sbjct: 128 S 128
>gi|242005773|ref|XP_002423735.1| poly A-specific ribonuclease PARN, putative [Pediculus humanus
corporis]
gi|212506937|gb|EEB10997.1| poly A-specific ribonuclease PARN, putative [Pediculus humanus
corporis]
Length = 550
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 25 ALFVTIDGEFTGL-----NNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
A F+ ID EFTGL NN N YD Y K R + F+ IQFG+ AF YD +
Sbjct: 22 AQFLAIDTEFTGLKVEGANN--NNNYYDEFDDLYLKNRLKAETFMAIQFGIVAFFYDEKS 79
Query: 80 KR 81
K+
Sbjct: 80 KK 81
>gi|14388565|dbj|BAB60801.1| hypothetical protein [Macaca fascicularis]
Length = 300
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
++ A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VQEADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 74
>gi|332245327|ref|XP_003271812.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 2 [Nomascus
leucogenys]
Length = 531
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
++ A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VQEADFVGLDMEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 74
>gi|354468613|ref|XP_003496747.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3
[Cricetulus griseus]
Length = 590
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 12/60 (20%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDK--------IRQGSMDFLLIQ 67
+AI+ A F IDGEF+G+++GP+ T+ +DTP + Y K + S+DFL Q
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKSSPDVKFVCQSSSIDFLASQ 76
>gi|403330912|gb|EJY64371.1| Putative poly [Oxytricha trifallax]
Length = 1969
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP--YDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
++I++ F++ID EF+GL+ + P Y+T + Y K + FL Q G+C F ++
Sbjct: 17 ESIETCEFISIDTEFSGLSISMDDKPHNYETVEERYLKTKYIVTKFLAFQIGICTFHWNQ 76
Query: 78 TTKR 81
KR
Sbjct: 77 QEKR 80
>gi|297723221|ref|NP_001173974.1| Os04g0467400 [Oryza sativa Japonica Group]
gi|255675538|dbj|BAH92702.1| Os04g0467400 [Oryza sativa Japonica Group]
Length = 207
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
++ A FV ID E +G+ + P +T D Y K+R + F +Q G+C F++D
Sbjct: 65 VRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRDSAERFAALQLGVCPFRWD 121
>gi|355562180|gb|EHH18812.1| hypothetical protein EGK_15481, partial [Macaca mulatta]
gi|355749010|gb|EHH53493.1| hypothetical protein EGM_14142, partial [Macaca fascicularis]
Length = 530
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
++ A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VQEADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 74
>gi|402868642|ref|XP_003898404.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Papio anubis]
Length = 531
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
++ A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VQEADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 74
>gi|348686050|gb|EGZ25865.1| hypothetical protein PHYSODRAFT_540459 [Phytophthora sojae]
Length = 606
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 3 PTQHPMILQHNITTRYAK-----AIKSALFVTIDGEFTGL--NNGPNTTPYDTPAQYYDK 55
PT + +HN A A+ + FV ID EFTGL N DT + Y K
Sbjct: 36 PTDEMNVTRHNFAKCLADLQKDLALPTCRFVAIDTEFTGLSPNEFEREQYLDTLEERYRK 95
Query: 56 IRQGSMDFLLIQFGLCAFKYD 76
+++ FL+ QFGL D
Sbjct: 96 VKRAGESFLVTQFGLSTVHLD 116
>gi|403274049|ref|XP_003928802.1| PREDICTED: poly(A)-specific ribonuclease PARN [Saimiri
boliviensis boliviensis]
Length = 464
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQ 58
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKK 59
>gi|194389110|dbj|BAG61572.1| unnamed protein product [Homo sapiens]
Length = 464
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQ 58
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKK 59
>gi|440804573|gb|ELR25450.1| RNA binding domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 631
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNT--TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
+AI S FV ID E TGL+ D+ + Y K+R+ + F+ IQ+GLC F
Sbjct: 17 QAILSCDFVAIDTELTGLSASKKARINSLDSVEERYGKLRESASKFMTIQWGLCTF 72
>gi|343962531|dbj|BAK62853.1| poly(A)-specific ribonuclease [Pan troglodytes]
Length = 531
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
++ A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VQEADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 74
>gi|114610057|ref|XP_001151114.1| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 isoform 3 [Pan troglodytes]
gi|397471750|ref|XP_003807445.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 2 [Pan paniscus]
Length = 531
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
++ A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VQEADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 74
>gi|326915669|ref|XP_003204136.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Meleagris gallopavo]
Length = 514
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 33 EFTGL------NNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTK 80
EFTGL NN P+ +D+PA+ Y K+R+ F + Q GL F +N+ K
Sbjct: 2 EFTGLHSAFPQNNQPSL--FDSPAERYQKVRRSVQRFTITQLGLAIFSEENSNK 53
>gi|21751916|dbj|BAC04070.1| unnamed protein product [Homo sapiens]
gi|119567997|gb|EAW47612.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1,
isoform CRA_a [Homo sapiens]
Length = 531
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
++ A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VQEADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTVCQIGLSVF 74
>gi|307203543|gb|EFN82576.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1 [Harpegnathos saltator]
Length = 355
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 22 IKSALFVTIDGEFTGLNN-GPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74
+K+A F+ ID EF+G+ + T+ +D+ + YDK R ++++QFG+ AF+
Sbjct: 20 LKNATFIAIDSEFSGIKDENIKTSLFDSIEERYDKNRNIIRPYIIVQFGITAFQ 73
>gi|426355066|ref|XP_004044958.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Gorilla gorilla gorilla]
Length = 513
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
++ A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VQEADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTVCQIGLSVF 74
>gi|449461041|ref|XP_004148252.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
gi|449524565|ref|XP_004169292.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
Length = 700
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
+++A FV ID E TG+ + P + +D Y ++ + F ++QFG+C F++D+
Sbjct: 60 VRAADFVAIDLEMTGITSAPWRDLLEFDRFDVRYLNVKDSAEKFAVLQFGICPFRWDS 117
>gi|395535236|ref|XP_003769636.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Sarcophilus harrisii]
Length = 533
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 27 FVTIDGEFTGLNN----GPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
F+ +D EFTGL + G T+ +D+PA++Y K +Q F + Q GL F
Sbjct: 24 FLGLDIEFTGLRSIFPKGQQTSLFDSPAEWYLKTKQSIQQFTVCQIGLSMF 74
>gi|302807724|ref|XP_002985556.1| hypothetical protein SELMODRAFT_424560 [Selaginella
moellendorffii]
gi|300146762|gb|EFJ13430.1| hypothetical protein SELMODRAFT_424560 [Selaginella
moellendorffii]
Length = 603
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
I+ A FV +D E TG+ P T D Y +R + F +IQFGLC +D
Sbjct: 20 IRQAAFVAVDLELTGVQTTPWRGATEVDNLHTRYLNLRDSAEKFAMIQFGLCPVLWD 76
>gi|296417778|ref|XP_002838529.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634469|emb|CAZ82720.1| unnamed protein product [Tuber melanosporum]
Length = 455
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 21 AIKSALFVTIDGEFTGLNN--GPNTTPYD---TPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+I ++ FV +D E +G++ GP TP + T + Y +++ + F ++Q GLCA Y
Sbjct: 18 SIDNSCFVAVDLELSGIHKTFGPRNTPLNRKQTLEERYKEVKAAAERFQVLQLGLCAVSY 77
Query: 76 D 76
D
Sbjct: 78 D 78
>gi|344240241|gb|EGV96344.1| Poly(A)-specific ribonuclease PARN [Cricetulus griseus]
Length = 367
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 61 MDFLLIQFGLCAFKYDNTTKR 81
MDFLL QFGLCAFKYD+T +
Sbjct: 1 MDFLLFQFGLCAFKYDHTDSK 21
>gi|401412380|ref|XP_003885637.1| putative CAF1 family ribonuclease domain containing protein
[Neospora caninum Liverpool]
gi|325120057|emb|CBZ55609.1| putative CAF1 family ribonuclease domain containing protein
[Neospora caninum Liverpool]
Length = 559
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTP---AQYYDKIRQGSMDFLLIQFGLCA 72
K I A FV ID EFTGL P ++ P A Y+++ QG+ FL Q G+CA
Sbjct: 53 KDISEADFVAIDLEFTGLF--PQSSSVKRPLCLASYFERCVQGAEYFLAPQLGICA 106
>gi|148664946|gb|EDK97362.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_a [Mus musculus]
Length = 563
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 61 MDFLLIQFGLCAFKYDNTTKR 81
MDFLL QFGLCAFKYD+T +
Sbjct: 1 MDFLLFQFGLCAFKYDHTDSK 21
>gi|403366643|gb|EJY83125.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1 [Oxytricha trifallax]
Length = 554
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 19 AKAIKSALFVTIDGEFTGLNNGPNTTP--YDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
AK+I+S F+ D EF+G G P +D+ Y K R FL Q G+ F +
Sbjct: 16 AKSIRSCEFIAFDTEFSGSKIGYEDKPHEFDSLDDKYRKNRSAVQKFLAFQVGITTFMWS 75
Query: 77 NTTKR 81
N K+
Sbjct: 76 NMKKK 80
>gi|334324288|ref|XP_001381461.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Monodelphis domestica]
Length = 615
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNN----GPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
I ++ F+ +D EFTGL + G T+ +D+PA++Y K R+ F + Q GL F
Sbjct: 19 ILASDFLGLDIEFTGLRSIYPKGQQTSLFDSPAEWYLKTRRSIQQFTVCQIGLSMF 74
>gi|242076112|ref|XP_002447992.1| hypothetical protein SORBIDRAFT_06g019420 [Sorghum bicolor]
gi|241939175|gb|EES12320.1| hypothetical protein SORBIDRAFT_06g019420 [Sorghum bicolor]
Length = 719
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
++ A FV +D E +G+ + P +T +D Y K+R + F +Q G+C F++D
Sbjct: 64 VREAAFVGVDLEMSGVTSAPWRDTFEFDRADVRYLKLRDSAERFAALQLGVCPFRWD 120
>gi|311243695|ref|XP_001926376.2| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Sus scrofa]
Length = 531
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 25 ALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 22 ADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 74
>gi|444722573|gb|ELW63261.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1 [Tupaia chinensis]
Length = 721
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 25 ALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 22 ADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 74
>gi|270013255|gb|EFA09703.1| hypothetical protein TcasGA2_TC011836 [Tribolium castaneum]
Length = 535
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP--YDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
++++ A F++ID EF+ L + P +D + Y K+R ++ + +Q G+ AF +DN
Sbjct: 18 RSLEKAKFISIDLEFSALQPVEHQAPRLFDDNKERYAKLRLNLLNVIPVQVGITAFHFDN 77
Query: 78 TT 79
T
Sbjct: 78 KT 79
>gi|395839184|ref|XP_003792479.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Otolemur garnettii]
Length = 535
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 25 ALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 22 ADFVGLDIEFTGLRSNLTGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 74
>gi|221115125|ref|XP_002160561.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Hydra
magnipapillata]
Length = 502
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 IKSALFVTIDGEFTGLNN-GPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTK 80
I + F++ID EF+GL+ N+ + Y+ ++ GS LLIQ+G+ FK+ K
Sbjct: 19 INNTDFISIDAEFSGLSTIKSNSGSCSNLEEKYNMLKDGSNKLLLIQYGISLFKWSEKKK 78
>gi|91090816|ref|XP_971302.1| PREDICTED: similar to Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Tribolium castaneum]
Length = 510
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP--YDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
++++ A F++ID EF+ L + P +D + Y K+R ++ + +Q G+ AF +DN
Sbjct: 22 RSLEKAKFISIDLEFSALQPVEHQAPRLFDDNKERYAKLRLNLLNVIPVQVGITAFHFDN 81
Query: 78 TT 79
T
Sbjct: 82 KT 83
>gi|440902237|gb|ELR53050.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1 [Bos grunniens mutus]
Length = 531
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 25 ALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 22 ADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 74
>gi|241565990|ref|XP_002402057.1| conserved hypothetical protein [Ixodes scapularis]
gi|215499948|gb|EEC09442.1| conserved hypothetical protein [Ixodes scapularis]
Length = 514
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 30 IDGEFTGLNNGPNTTP--YDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
+D EFTGL P P +D+ Y K+RQ +++ Q GLC F
Sbjct: 28 VDTEFTGLVREPAAAPSLFDSADARYQKLRQTVSSYIVCQLGLCTF 73
>gi|403284980|ref|XP_003933822.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Saimiri boliviensis
boliviensis]
Length = 531
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
++ + FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VQESDFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSMF 74
>gi|340055314|emb|CCC49627.1| putative ribonuclease, fragment, partial [Trypanosoma vivax Y486]
Length = 166
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 17 RYAKAIKSALFVTIDGEFTGLN--NGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74
++ + +++ F ID E TG+N + P + DTP + Y R+ + + +IQ G+C F
Sbjct: 14 KFVELLQTCDFYAIDEEMTGINVADKPESIT-DTPEETYRAKREAASRYSIIQVGICLFH 72
Query: 75 YDNTT 79
D+ T
Sbjct: 73 KDDDT 77
>gi|354481849|ref|XP_003503113.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Cricetulus griseus]
Length = 577
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
I A FV +D EFTGL + + + +D P+++Y K RQ F + Q GL F
Sbjct: 19 IDEADFVGLDIEFTGLRSNSSRPQQISLFDLPSEWYMKTRQSVQQFTICQIGLSVF 74
>gi|344249632|gb|EGW05736.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1 [Cricetulus griseus]
Length = 433
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
I A FV +D EFTGL + + + +D P+++Y K RQ F + Q GL F
Sbjct: 19 IDEADFVGLDIEFTGLRSNSSRPQQISLFDLPSEWYMKTRQSVQQFTICQIGLSVF 74
>gi|302810647|ref|XP_002987014.1| hypothetical protein SELMODRAFT_446815 [Selaginella
moellendorffii]
gi|300145179|gb|EFJ11857.1| hypothetical protein SELMODRAFT_446815 [Selaginella
moellendorffii]
Length = 603
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
I+ A FV +D E +G+ P T D Y +R + F +IQFGLC +D
Sbjct: 20 IRQAAFVAVDLELSGVQTTPWRGATEVDNLHTRYLNLRDSAEKFAMIQFGLCPVVWD 76
>gi|426235017|ref|XP_004011487.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Ovis aries]
Length = 529
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 25 ALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A FV +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 22 ADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSIQQFTICQIGLSVF 74
>gi|348669380|gb|EGZ09203.1| hypothetical protein PHYSODRAFT_423896 [Phytophthora sojae]
Length = 243
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 17 RYAKAIKSALFVTIDGEFTGLN--NGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74
R + + + FV ID E G++ + P + D+ + + + R+ + F L+QFGL F
Sbjct: 26 RLQRVVSRSAFVAIDTEMGGVSCHDTPRPSVMDSIDERFAQYRESARQFPLVQFGLSVFL 85
Query: 75 YDNTTK 80
+D +
Sbjct: 86 WDADAR 91
>gi|357621648|gb|EHJ73417.1| hypothetical protein KGM_05205 [Danaus plexippus]
Length = 394
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 20 KAIKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
K +K + F+ D EFT + +G +DT + YD+++ ++ Q GL F+YD
Sbjct: 17 KCLKKSCFIGFDAEFTAILSGECFKYRLFDTNKERYDRMKDEVCKMIMNQVGLTMFQYDR 76
Query: 78 TTKR 81
R
Sbjct: 77 DNDR 80
>gi|326928857|ref|XP_003210589.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Meleagris
gallopavo]
Length = 574
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 61 MDFLLIQFGLCAFKYDNTTKR 81
MDFLL QFGLC FKYD+T ++
Sbjct: 1 MDFLLFQFGLCTFKYDHTEEK 21
>gi|71894805|ref|NP_001025800.1| poly(A)-specific ribonuclease PARN [Gallus gallus]
gi|53133784|emb|CAG32221.1| hypothetical protein RCJMB04_20e14 [Gallus gallus]
Length = 574
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 61 MDFLLIQFGLCAFKYDNTTKR 81
MDFLL QFGLC FKYD+T ++
Sbjct: 1 MDFLLFQFGLCTFKYDHTEEK 21
>gi|57834081|emb|CAE05998.4| OSJNBa0016O02.8 [Oryza sativa Japonica Group]
Length = 622
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
++ A FV ID E +G+ + P +T D Y K+R + F +Q G+C F++D
Sbjct: 65 VRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRDSAERFAALQLGVCPFRWD 121
>gi|351703955|gb|EHB06874.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1 [Heterocephalus glaber]
Length = 466
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNG----PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
K ++ A FV +D EFTGL + + +D P+ +Y K RQ F + Q GL F
Sbjct: 17 KLLREADFVGLDIEFTGLRSNLSGLQQISLFDLPSDWYLKTRQSIQQFTICQIGLSVF 74
>gi|322802707|gb|EFZ22924.1| hypothetical protein SINV_00082 [Solenopsis invicta]
Length = 486
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 20 KAIKSALFVTIDGEFTGLN-NGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74
+ +K+A F+ IDGEFTG++ + + +D+ + Y+ R ++IQFG+ AF+
Sbjct: 18 QTLKNANFIAIDGEFTGIDGDDVKNSLFDSVHERYENNRINIQPHIIIQFGISAFQ 73
>gi|148670094|gb|EDL02041.1| mCG121400, isoform CRA_b [Mus musculus]
Length = 207
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNG----PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
+ + A FV +D EFTGL + + +D P+++Y K RQ F + Q GL F
Sbjct: 11 ELVAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSMF 68
>gi|71043644|ref|NP_001020895.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Rattus norvegicus]
gi|68533833|gb|AAH99137.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Rattus norvegicus]
Length = 341
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNNG----PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
+ A FV +D EFTGL + + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSMF 74
>gi|149027455|gb|EDL83045.1| rCG44902 [Rattus norvegicus]
Length = 273
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNNG----PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
+ A FV +D EFTGL + + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSMF 74
>gi|148670093|gb|EDL02040.1| mCG121400, isoform CRA_a [Mus musculus]
Length = 280
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNNG----PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
+ A FV +D EFTGL + + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSMF 74
>gi|449497560|ref|XP_002188970.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Taeniopygia guttata]
Length = 496
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 26/87 (29%)
Query: 17 RYAKAIKSALFVTIDGEFTGLNNGPN--------------TTP---------YDTPAQYY 53
R + I+ A FV GE G++ GP T P +D+PA+ Y
Sbjct: 14 RLRRRIQRAAFV---GELGGVSPGPRAALGPQPAVQEAAGTCPAWGAGREGLFDSPAERY 70
Query: 54 DKIRQGSMDFLLIQFGLCAFKYDNTTK 80
K RQ F L+Q GL F +N+ K
Sbjct: 71 VKARQSVQRFSLVQLGLAIFSKENSNK 97
>gi|357167784|ref|XP_003581331.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Brachypodium
distachyon]
Length = 729
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
++ A FV +D E +G+ + P +T D Y K+R + F +Q G+C F++D
Sbjct: 66 VRDAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSAQRFAALQLGVCPFRWD 122
>gi|395860986|ref|XP_003802778.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Otolemur
garnettii]
Length = 588
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDK-----IRQGSMDFLLIQ 67
+AI+ A F IDGEF+G+++GP+ T +DTP + + + S+DFL Q
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERFSPDVKFVCQSSSIDFLASQ 73
>gi|198278452|ref|NP_001030038.1| poly(A)-specific ribonuclease PARN-like domain-containing protein
1 [Mus musculus]
gi|187957406|gb|AAI58034.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Mus musculus]
Length = 531
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNNG----PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
+ A FV +D EFTGL + + +D P+++Y K RQ F + Q GL F
Sbjct: 19 VAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSMF 74
>gi|118349638|ref|XP_001008100.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|89289867|gb|EAR87855.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 578
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 9 ILQHNITTRYAKAIK---SALFVTIDGEFTGL--NNGPNTTPYDTPAQYYDKIRQGSMDF 63
I ++N Y K I+ S F++ D EF+GL YD+ Y K++ ++
Sbjct: 3 IDRNNFKDNYQKIIQLIQSCDFISFDCEFSGLATERFSKIRKYDSDEDIYQKLKHTVQNY 62
Query: 64 LLIQFGLCAFKYDNTTKR 81
L+Q GLC + + K+
Sbjct: 63 HLLQIGLCIYTFCKVQKK 80
>gi|345802287|ref|XP_003434899.1| PREDICTED: poly(A)-specific ribonuclease PARN [Canis lupus
familiaris]
Length = 592
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDK-----IRQGSMDFLLIQ 67
+AIK A F IDGEF+G+++GP+ T +DTP + + S+DFL Q
Sbjct: 17 EAIKEADFFAIDGEFSGISDGPSVTALTNGFDTPEERSSPDVKFVCQSSSIDFLASQ 73
>gi|413918597|gb|AFW58529.1| hypothetical protein ZEAMMB73_225129 [Zea mays]
Length = 686
Score = 37.7 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
++ A FV +D E +G+ + P +T D Y K+R + F +Q G+C F++D
Sbjct: 56 VREAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSAERFAALQLGVCPFRWD 112
>gi|293331279|ref|NP_001169499.1| uncharacterized protein LOC100383372 [Zea mays]
gi|224029697|gb|ACN33924.1| unknown [Zea mays]
gi|413918598|gb|AFW58530.1| hypothetical protein ZEAMMB73_225129 [Zea mays]
Length = 693
Score = 37.7 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
++ A FV +D E +G+ + P +T D Y K+R + F +Q G+C F++D
Sbjct: 56 VREAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSAERFAALQLGVCPFRWD 112
>gi|344239263|gb|EGV95366.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1 [Cricetulus griseus]
Length = 171
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 22 IKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
I A FV++D +FTGL + + + +D P+++Y K RQ F + + GL F
Sbjct: 19 INEADFVSLDIQFTGLCSNSSRPQQISLFDLPSEWYMKTRQSVQQFTICRIGLSVF 74
>gi|297679544|ref|XP_002817589.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Pongo abelii]
Length = 532
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 22 IKSALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFG 69
++ A FV +D EFTGL + GP + +D P+++Y K RQ F + Q G
Sbjct: 19 VQEADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIG 70
>gi|156384950|ref|XP_001633395.1| predicted protein [Nematostella vectensis]
gi|156220464|gb|EDO41332.1| predicted protein [Nematostella vectensis]
Length = 449
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 21 AIKSALFVTIDGEFTGLNNGPNTTP--YDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74
AI+ ++FV ID EFTGL P +D Y K ++ L+ QFGL F+
Sbjct: 19 AIEKSVFVAIDTEFTGLYANDTCKPCLFDNAEAIYKKQKKTVSQVLISQFGLSMFE 74
>gi|397525567|ref|XP_003832733.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Pan
paniscus]
Length = 578
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 61 MDFLLIQFGLCAFKYDNTTKR 81
MDFLL QFGLC FKYD T +
Sbjct: 1 MDFLLFQFGLCTFKYDYTDSK 21
>gi|395860984|ref|XP_003802777.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Otolemur
garnettii]
Length = 573
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 61 MDFLLIQFGLCAFKYDNTTKR 81
MDFLL QFGLC FKYD T +
Sbjct: 1 MDFLLFQFGLCTFKYDYTDSK 21
>gi|426254329|ref|XP_004020831.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Ovis
aries]
Length = 577
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 61 MDFLLIQFGLCAFKYDNTTKR 81
MDFLL QFGLC FKYD T +
Sbjct: 1 MDFLLFQFGLCTFKYDYTDSK 21
>gi|344292090|ref|XP_003417761.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2
[Loxodonta africana]
Length = 592
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDK-----IRQGSMDFLLIQ 67
+AI+ A F IDGEF+G+++GP+ T +DTP + + S+DFL Q
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERSSPDVKFVCQSSSIDFLASQ 73
>gi|197333695|ref|NP_001127949.1| poly(A)-specific ribonuclease PARN isoform 2 [Homo sapiens]
gi|194375568|dbj|BAG56729.1| unnamed protein product [Homo sapiens]
Length = 578
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 61 MDFLLIQFGLCAFKYDNTTKR 81
MDFLL QFGLC FKYD T +
Sbjct: 1 MDFLLFQFGLCTFKYDYTDSK 21
>gi|332240353|ref|XP_003269352.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Nomascus
leucogenys]
Length = 578
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 61 MDFLLIQFGLCAFKYDNTTKR 81
MDFLL QFGLC FKYD T +
Sbjct: 1 MDFLLFQFGLCTFKYDYTDSK 21
>gi|114610059|ref|XP_518838.2| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 isoform 4 [Pan troglodytes]
gi|397471748|ref|XP_003807444.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 1 [Pan paniscus]
gi|410307434|gb|JAA32317.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Pan troglodytes]
Length = 520
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 25 ALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 11 AFLAGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 63
>gi|71413865|ref|XP_809055.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70873378|gb|EAN87204.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 14 ITTRYAKAIKSALFVTIDGEFTGLNNG--PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLC 71
+ ++ + +KS F D E TG++ P + DTP + Y R + + +IQ G+C
Sbjct: 11 VLPKFVELLKSCDFYAFDEEMTGISTAELPESIT-DTPEESYRAKRTVASRYNIIQVGIC 69
Query: 72 AFKYDNT 78
F +NT
Sbjct: 70 LFHRENT 76
>gi|71665029|ref|XP_819489.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70884792|gb|EAN97638.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 14 ITTRYAKAIKSALFVTIDGEFTGLNNG--PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLC 71
+ ++ + +KS F D E TG++ P + DTP + Y R + + +IQ G+C
Sbjct: 11 VLPKFVELLKSCDFYAFDEEMTGISTAELPESIT-DTPEESYRAKRTVASRYNIIQVGIC 69
Query: 72 AFKYDNT 78
F +NT
Sbjct: 70 LFHRENT 76
>gi|407868227|gb|EKG08788.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 14 ITTRYAKAIKSALFVTIDGEFTGLNNG--PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLC 71
+ ++ + +KS F D E TG++ P + DTP + Y R + + +IQ G+C
Sbjct: 11 VLPKFVELLKSCDFYAFDEEMTGISTAELPESIT-DTPEESYRAKRTVASRYNIIQVGIC 69
Query: 72 AFKYDNT 78
F +NT
Sbjct: 70 LFHRENT 76
>gi|27735155|ref|NP_775787.1| poly(A)-specific ribonuclease PARN-like domain-containing protein
1 precursor [Homo sapiens]
gi|160419239|sp|Q8NA58.2|PNDC1_HUMAN RecName: Full=Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1; Flags: Precursor
gi|21757367|dbj|BAC05101.1| unnamed protein product [Homo sapiens]
gi|85567674|gb|AAI12247.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Homo sapiens]
gi|119567998|gb|EAW47613.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1,
isoform CRA_b [Homo sapiens]
gi|313883454|gb|ADR83213.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1
(PNLDC1) [synthetic construct]
Length = 520
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 25 ALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 11 AFLAGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTVCQIGLSVF 63
>gi|344295143|ref|XP_003419273.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Loxodonta africana]
Length = 531
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 25 ALFVTIDGEFTGLNNG----PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A FV +D EFTGL + + +D P+++Y K RQ F + Q GL F
Sbjct: 22 ADFVGLDIEFTGLRSTLSRPQQISLFDLPSEWYLKSRQSVQQFTICQIGLSVF 74
>gi|297283531|ref|XP_002808334.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Macaca mulatta]
Length = 596
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDK-----IRQGSMDFLLIQ 67
+AI+ A F IDGEF+G+++GP+ T +DTP + + S+DFL Q
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERSSPDVKFVCQSSSIDFLASQ 73
>gi|348584112|ref|XP_003477816.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 2
[Cavia porcellus]
Length = 591
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 9 ILQHNITTRYAK---AIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDK-----I 56
I+++N + K AI+ A F IDGEF+G+++GP+ T +DTP +
Sbjct: 3 IIRNNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERSSPDVKFVC 62
Query: 57 RQGSMDFLLIQ 67
+ S+DFL Q
Sbjct: 63 QSSSIDFLASQ 73
>gi|332845320|ref|XP_003315023.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Pan
troglodytes]
gi|397525569|ref|XP_003832734.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Pan
paniscus]
Length = 593
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDK-----IRQGSMDFLLIQ 67
+AI+ A F IDGEF+G+++GP+ T +DTP + + S+DFL Q
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERSSPDVKFVCQSSSIDFLASQ 73
>gi|145503682|ref|XP_001437815.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404972|emb|CAK70418.1| unnamed protein product [Paramecium tetraurelia]
Length = 516
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 22 IKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
IK F+ D E TG+ T + P + Y K R+ SM + +IQFGL F
Sbjct: 19 IKHCDFLGFDLELTGIKGDYQDTFEELPFERYLKARKVSMKYNIIQFGLSIF 70
>gi|339715201|ref|NP_001229921.1| poly(A)-specific ribonuclease PARN isoform 3 [Homo sapiens]
gi|194377130|dbj|BAG63126.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDK-----IRQGSMDFLLIQ 67
+AI+ A F IDGEF+G+++GP+ T +DTP + + S+DFL Q
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERSSPDVKFVCQSSSIDFLASQ 73
>gi|332240355|ref|XP_003269353.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Nomascus
leucogenys]
Length = 593
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDK-----IRQGSMDFLLIQ 67
+AI+ A F IDGEF+G+++GP+ T +DTP + + S+DFL Q
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERSSPDVKFVCQSSSIDFLASQ 73
>gi|332245325|ref|XP_003271811.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 1 [Nomascus
leucogenys]
Length = 520
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 30 IDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
+D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 16 LDMEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 63
>gi|345784478|ref|XP_541182.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Canis lupus familiaris]
Length = 531
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 25 ALFVTIDGEFTGLNNG----PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A FV +D EFTGL + + +D P+++Y K R F + Q GL F
Sbjct: 22 ADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRHSVQQFTICQIGLSVF 74
>gi|19112846|ref|NP_596054.1| CAF1 family ribonuclease (predicted) [Schizosaccharomyces pombe
972h-]
gi|74676190|sp|O94386.1|YGS9_SCHPO RecName: Full=Uncharacterized protein C29A10.09c
gi|4007797|emb|CAA22437.1| CAF1 family ribonuclease (predicted) [Schizosaccharomyces pombe]
Length = 427
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
K + SA +V+ID EF+GL N +T Y+ +R+ S+ + ++Q G+ N
Sbjct: 17 KHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYTILQIGITFIYLQNNG 76
Query: 80 K 80
K
Sbjct: 77 K 77
>gi|348561225|ref|XP_003466413.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Cavia porcellus]
Length = 535
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 19 AKAIKSALFVTIDGEFTGLNNG----PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A+ + A F +D EFTGL + + +D P+ +Y K RQ F + Q GL F
Sbjct: 16 AETVIFASFAGLDIEFTGLRSNLSRFQQISLFDLPSDWYLKTRQSIQQFSICQIGLSVF 74
>gi|350403678|ref|XP_003486873.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Bombus impatiens]
Length = 653
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 17 RYAKAIKSALFVTIDGEFTGLNNGPN--TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
R AI +A F+ ID E +G+++ N + +DT Y ++ F+++QFG+ F
Sbjct: 15 RIENAINNAAFIAIDAEMSGIHSERNLKNSLFDTLNDRYMAWKRNIQQFVIVQFGITTF 73
>gi|291397222|ref|XP_002715010.1| PREDICTED: poly(A)-specific ribonuclease (deadenylation nuclease)
[Oryctolagus cuniculus]
Length = 531
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 25 ALFVTIDGEFTGLNNG----PNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A FV +D EFTGL + + +D P+++Y K R+ F + Q GL F
Sbjct: 22 ADFVGLDIEFTGLRSSLSEPHQISLFDLPSEWYLKTRRSVQQFTICQIGLSVF 74
>gi|367049582|ref|XP_003655170.1| hypothetical protein THITE_155482 [Thielavia terrestris NRRL
8126]
gi|347002434|gb|AEO68834.1| hypothetical protein THITE_155482 [Thielavia terrestris NRRL
8126]
Length = 513
Score = 34.7 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 20 KAIKSALFVTIDGEFTGLN-NGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDN 77
+AI + +V ID E TG++ + +T P +T Y + + F ++QFG+ YD+
Sbjct: 17 EAISLSEYVAIDLEMTGVSGHAVDTAPENTEITAYQLAAEAARTFQVLQFGMTCLSYDD 75
>gi|403340574|gb|EJY69575.1| Poly(A)-specific ribonuclease PARN [Oxytricha trifallax]
Length = 927
Score = 34.7 bits (78), Expect = 8.3, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 21 AIKSALFVTIDGEFTGLNNGPNTT--PYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+I SA F+ D EF+GL+ G + YDT Y K+ Q GLC F++
Sbjct: 18 SINSADFIAYDTEFSGLSIGFDDKGHEYDTVEDRYQKLVHNCSRMNTFQVGLCTFRW 74
>gi|340723245|ref|XP_003400002.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Bombus
terrestris]
Length = 561
Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 17 RYAKAIKSALFVTIDGEFTGLNNGPN--TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
R AI +A F+ ID E +G++ + + +DT Y ++ F+++QFG+ F
Sbjct: 15 RIENAINNAAFIAIDAEMSGIHTERDLKNSLFDTLNDRYTAWKRNIQQFVIVQFGITTF 73
>gi|145495491|ref|XP_001433738.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400858|emb|CAK66341.1| unnamed protein product [Paramecium tetraurelia]
Length = 526
Score = 34.3 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 22 IKSALFVTIDGEFTGL--NNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
IK A ++ +D EFTG+ ++ + D+ Y K+++ FL IQ GLC F+ D
Sbjct: 19 IKEANYIALDFEFTGVLASSLLRNSLLDSFQMRYWKVKENVRRFLPIQMGLCTFRED 75
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,369,650,728
Number of Sequences: 23463169
Number of extensions: 50487993
Number of successful extensions: 84757
Number of sequences better than 100.0: 218
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 84557
Number of HSP's gapped (non-prelim): 219
length of query: 81
length of database: 8,064,228,071
effective HSP length: 52
effective length of query: 29
effective length of database: 6,844,143,283
effective search space: 198480155207
effective search space used: 198480155207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)