BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6931
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VDG3|PARN_MOUSE Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1
SV=1
Length = 624
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T+ +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 76
Query: 76 DNTTKR 81
D+T +
Sbjct: 77 DHTDSK 82
>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1
SV=1
Length = 631
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
KAI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SM+FLL QFGLC F Y
Sbjct: 17 KAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHSMEFLLFQFGLCTFNY 76
Query: 76 DNTTKR 81
DNT +
Sbjct: 77 DNTEAK 82
>sp|P69341|PARN_BOVIN Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1
SV=2
Length = 638
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>sp|Q5RC51|PARN_PONAB Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2
SV=1
Length = 639
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>sp|O95453|PARN_HUMAN Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1
SV=1
Length = 639
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>sp|Q7ZU92|PARN_DANRE Poly(A)-specific ribonuclease PARN OS=Danio rerio GN=parn PE=1
SV=2
Length = 660
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 45/60 (75%), Gaps = 4/60 (6%)
Query: 21 AIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
A++ A F++IDGEFTG+++GP+ T DTP + Y K+R+ SM+FLL QFG+C F+YD
Sbjct: 18 AVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHSMNFLLFQFGVCTFRYD 77
>sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN
PE=1 SV=2
Length = 689
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
+K+A FV ID E TG+ + P ++ +D Y K++ + F ++QFG+C F++D+ T
Sbjct: 57 VKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRT 116
Query: 80 K 80
+
Sbjct: 117 Q 117
>sp|Q8NA58|PNDC1_HUMAN Poly(A)-specific ribonuclease PARN-like domain-containing protein
1 OS=Homo sapiens GN=PNLDC1 PE=2 SV=2
Length = 520
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 25 ALFVTIDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
A +D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 11 AFLAGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTVCQIGLSVF 63
>sp|O94386|YGS9_SCHPO Uncharacterized protein C29A10.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A10.09c PE=3 SV=1
Length = 427
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
K + SA +V+ID EF+GL N +T Y+ +R+ S+ + ++Q G+ N
Sbjct: 17 KHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYTILQIGITFIYLQNNG 76
Query: 80 K 80
K
Sbjct: 77 K 77
>sp|Q5R6R6|PNDC1_PONAB Poly(A)-specific ribonuclease PARN-like domain-containing protein
1 OS=Pongo abelii GN=PNLDC1 PE=2 SV=1
Length = 520
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 30 IDGEFTGLNN---GPNT-TPYDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
+D EFTGL + GP + +D P+++Y K RQ F + Q GL F
Sbjct: 16 LDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVF 63
>sp|P59686|NAGB_LYSSH Glucosamine-6-phosphate deaminase OS=Lysinibacillus sphaericus
GN=nagB PE=2 SV=1
Length = 221
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 10 LQHNITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFG 69
L+ N YA + LF + + L NG T P + A+Y ++Q S+DF L+ G
Sbjct: 54 LEANHEQSYAYYMHQHLFHEKPFQASYLPNGLATNPLEEAARYEALLQQHSLDFQLLGIG 113
>sp|P63335|6PGD_STAAW 6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus
aureus (strain MW2) GN=gnd PE=3 SV=1
Length = 468
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 13 NITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQ 67
NI T Y A++ + TG+ NG T + + YYD R + LIQ
Sbjct: 394 NIVTEYQDALRDVVA-------TGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441
>sp|Q6G954|6PGD_STAAS 6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus
aureus (strain MSSA476) GN=gnd PE=3 SV=1
Length = 468
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 13 NITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQ 67
NI T Y A++ + TG+ NG T + + YYD R + LIQ
Sbjct: 394 NIVTEYQDALRDVVA-------TGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441
>sp|Q6GGI7|6PGD_STAAR 6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus
aureus (strain MRSA252) GN=gnd PE=3 SV=1
Length = 468
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 13 NITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQ 67
NI T Y A++ + TG+ NG T + + YYD R + LIQ
Sbjct: 394 NIVTEYQDALRDVVA-------TGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441
>sp|P63334|6PGD_STAAN 6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus
aureus (strain N315) GN=gnd PE=1 SV=1
Length = 468
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 13 NITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQ 67
NI T Y A++ + TG+ NG T + + YYD R + LIQ
Sbjct: 394 NIVTEYQDALRDVVA-------TGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441
>sp|Q5HFR2|6PGD_STAAC 6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus
aureus (strain COL) GN=gnd PE=3 SV=1
Length = 468
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 13 NITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQ 67
NI T Y A++ + TG+ NG T + + YYD R + LIQ
Sbjct: 394 NIVTEYQDALRDVVA-------TGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441
>sp|Q931R3|6PGD_STAAM 6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=gnd PE=1 SV=1
Length = 468
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 13 NITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQ 67
NI T Y A++ + TG+ NG T + + YYD R + LIQ
Sbjct: 394 NIVTEYQDALRDVVA-------TGVQNGVPTPGFSSSINYYDSYRAADLPANLIQ 441
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,065,766
Number of Sequences: 539616
Number of extensions: 1171324
Number of successful extensions: 1921
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1902
Number of HSP's gapped (non-prelim): 19
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)