Query psy6931
Match_columns 81
No_of_seqs 101 out of 359
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 22:11:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_B CCR4-NOT transcription 99.9 3.5E-24 1.2E-28 156.5 6.1 73 6-78 15-87 (285)
2 3d45_A Poly(A)-specific ribonu 99.9 5.9E-24 2E-28 164.1 6.8 77 4-80 3-83 (507)
3 2d5r_A CCR4-NOT transcription 99.9 1.7E-23 5.9E-28 150.8 6.8 74 5-78 4-77 (252)
4 2a1r_A Poly(A)-specific ribonu 99.9 2.5E-23 8.4E-28 158.2 7.1 75 5-79 2-80 (430)
5 1uoc_A POP2; hydrolase, DEDD n 99.9 3.8E-23 1.3E-27 151.5 5.2 74 5-78 18-91 (289)
6 2p51_A SPCC18.06C protein; DED 99.9 2.2E-22 7.6E-27 149.8 7.2 74 5-78 25-98 (333)
7 3v9w_A Ribonuclease T; DEDD nu 96.1 0.0042 1.4E-07 42.4 3.4 41 13-74 25-65 (235)
8 2f96_A Ribonuclease T; RNAse, 95.4 0.013 4.4E-07 39.7 3.5 37 18-75 22-58 (224)
9 2p1j_A POLIII, DNA polymerase 95.2 0.016 5.6E-07 38.2 3.3 33 21-74 8-40 (186)
10 2igi_A Oligoribonuclease; RNAs 94.8 0.023 7.7E-07 37.0 3.2 16 24-39 4-19 (180)
11 1y97_A Three prime repair exon 92.3 0.09 3.1E-06 35.6 2.8 30 25-75 10-39 (238)
12 3mxm_B Three prime repair exon 92.1 0.081 2.8E-06 36.6 2.4 29 26-75 13-41 (242)
13 3tr8_A Oligoribonuclease; tran 91.4 0.081 2.8E-06 35.6 1.7 19 23-41 7-25 (186)
14 2gui_A DNA polymerase III epsi 91.3 0.13 4.5E-06 33.7 2.7 34 25-74 9-42 (194)
15 2xri_A ERI1 exoribonuclease 3; 91.3 0.15 5E-06 34.6 3.0 30 26-74 32-61 (224)
16 1w0h_A 3'-5' exonuclease ERI1; 90.5 0.18 6.1E-06 33.1 2.8 32 26-74 11-42 (204)
17 2qxf_A Exodeoxyribonuclease I; 90.0 0.18 6.3E-06 38.6 2.8 32 22-74 6-37 (482)
18 1zbh_A 3'-5' exonuclease ERI1; 89.7 0.28 9.6E-06 34.8 3.4 33 25-74 78-110 (299)
19 1wlj_A Interferon stimulated g 89.4 0.075 2.6E-06 35.1 0.2 16 24-39 4-19 (189)
20 2gbz_A Oligoribonuclease; ORN, 89.1 0.13 4.5E-06 34.1 1.2 17 23-39 7-23 (194)
21 3u3y_B Three prime repair exon 89.0 0.25 8.6E-06 36.0 2.8 29 26-75 13-41 (314)
22 3cg7_A CRN-4, cell death-relat 88.3 0.23 7.8E-06 35.6 2.1 31 26-74 20-50 (308)
23 1zbu_A ERI-1 homolog, 3'-5' ex 86.5 0.37 1.3E-05 35.3 2.4 33 25-74 128-160 (349)
24 2kfn_A Klenow fragment of DNA 81.8 0.93 3.2E-05 35.2 2.9 28 12-39 13-40 (605)
25 3saf_A Exosome component 10; e 72.5 2.4 8.3E-05 31.9 2.8 26 13-38 117-142 (428)
26 2e6m_A Werner syndrome ATP-dep 67.1 4.9 0.00017 26.3 3.1 22 16-37 31-52 (208)
27 1yt3_A Ribonuclease D, RNAse D 64.6 4.5 0.00015 29.3 2.8 27 12-38 9-35 (375)
28 1vk0_A Hypothetical protein; h 60.6 3.2 0.00011 28.1 1.3 30 6-35 25-56 (206)
29 2hbj_A Exosome complex exonucl 56.5 7.1 0.00024 28.9 2.6 27 12-38 93-119 (410)
30 2auh_B Growth factor receptor- 45.5 11 0.00038 21.3 1.7 26 20-51 9-34 (59)
31 3cym_A Uncharacterized protein 41.6 15 0.00052 27.4 2.4 26 12-37 24-50 (440)
32 1r7l_A Phage protein; structur 41.0 12 0.00039 23.7 1.4 27 6-32 44-70 (110)
33 4g3h_A Arginase (ROCF); rossma 37.4 1.1E+02 0.0038 21.8 6.7 63 9-73 210-282 (330)
34 2npt_A Dual specificity mitoge 35.9 25 0.00087 21.8 2.4 28 7-34 35-62 (106)
35 4dfk_A DNA polymerase I, therm 32.5 12 0.00041 28.9 0.6 15 26-40 11-25 (540)
36 2ra9_A Uncharacterized protein 28.2 20 0.00068 23.6 1.0 15 22-36 74-88 (150)
37 1x9m_A DNA polymerase; DNA plo 24.8 22 0.00077 28.0 0.9 14 27-40 1-14 (698)
38 2re3_A Uncharacterized protein 23.2 23 0.00078 24.2 0.6 17 21-37 90-106 (194)
39 4hec_A Putative uncharacterize 22.2 22 0.00075 23.9 0.4 11 27-37 24-34 (190)
40 2r25_B Osmosensing histidine p 21.5 1.2E+02 0.0042 17.1 4.1 31 8-38 33-66 (133)
41 3ilh_A Two component response 21.3 1.2E+02 0.0041 17.0 4.3 30 8-37 41-73 (146)
No 1
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=99.90 E-value=3.5e-24 Score=156.54 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=68.4
Q ss_pred CccccHHHHHHHHHHHhccCCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeeeecCC
Q psy6931 6 HPMILQHNITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNT 78 (81)
Q Consensus 6 ~~~~NF~~~l~~i~~~I~~a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~~~~~ 78 (81)
|.+.||+++++.|+++|++|+||||||||||+..++.....+++++||+++|.||+.+++||+|||+|.++.+
T Consensus 15 Vw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~ 87 (285)
T 4gmj_B 15 VWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGE 87 (285)
T ss_dssp ECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSC
T ss_pred echhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCC
Confidence 6779999999999999999999999999999988876678899999999999999999999999999988764
No 2
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=99.89 E-value=5.9e-24 Score=164.11 Aligned_cols=77 Identities=44% Similarity=0.760 Sum_probs=68.0
Q ss_pred CcCccccHHHHHHHHHHHhccCCeEEEeccCCCCccCCCC----CCCCCHHHHHHHHHhccccccceeeeeeeeeecCCC
Q psy6931 4 TQHPMILQHNITTRYAKAIKSALFVTIDGEFTGLNNGPNT----TPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79 (81)
Q Consensus 4 ~~~~~~NF~~~l~~i~~~I~~a~FVAiD~EFtGl~~~~~~----~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~~~~~~ 79 (81)
-.|++.||+++|+.|+++|++|+|||||||||||..++.. +.++|+++||+++|.+|+.|+|||+|||+|+++.+.
T Consensus 3 m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~~ 82 (507)
T 3d45_A 3 MEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHTD 82 (507)
T ss_dssp EEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSSS
T ss_pred eEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCCC
Confidence 4689999999999999999999999999999999876642 358999999999999999999999999999998764
Q ss_pred C
Q psy6931 80 K 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 83 ~ 83 (507)
T 3d45_A 83 S 83 (507)
T ss_dssp S
T ss_pred C
Confidence 3
No 3
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=99.89 E-value=1.7e-23 Score=150.76 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=66.4
Q ss_pred cCccccHHHHHHHHHHHhccCCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeeeecCC
Q psy6931 5 QHPMILQHNITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNT 78 (81)
Q Consensus 5 ~~~~~NF~~~l~~i~~~I~~a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~~~~~ 78 (81)
.|+++||+++|+.|+++|++|+||||||||||+..++.....+++++||+++|.||+.++|||+|||+|..+.+
T Consensus 4 eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~ 77 (252)
T 2d5r_A 4 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGE 77 (252)
T ss_dssp EECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSC
T ss_pred EehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCC
Confidence 47899999999999999999999999999999998774344458899999999999999999999999987544
No 4
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=99.88 E-value=2.5e-23 Score=158.16 Aligned_cols=75 Identities=45% Similarity=0.786 Sum_probs=68.4
Q ss_pred cCccccHHHHHHHHHHHhccCCeEEEeccCCCCccCCC----CCCCCCHHHHHHHHHhccccccceeeeeeeeeecCCC
Q psy6931 5 QHPMILQHNITTRYAKAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79 (81)
Q Consensus 5 ~~~~~NF~~~l~~i~~~I~~a~FVAiD~EFtGl~~~~~----~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~~~~~~ 79 (81)
+++++||++.|+.|.++|++|+|||||+||||+..++. .+.++|+++||+++|.+|+.|+|||+|||+|+++.+.
T Consensus 2 ~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~ 80 (430)
T 2a1r_A 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTD 80 (430)
T ss_dssp EECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTT
T ss_pred ceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCC
Confidence 57899999999999999999999999999999987763 2578999999999999999999999999999998754
No 5
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=99.87 E-value=3.8e-23 Score=151.52 Aligned_cols=74 Identities=18% Similarity=0.056 Sum_probs=59.3
Q ss_pred cCccccHHHHHHHHHHHhccCCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeeeecCC
Q psy6931 5 QHPMILQHNITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNT 78 (81)
Q Consensus 5 ~~~~~NF~~~l~~i~~~I~~a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~~~~~ 78 (81)
.|+++||+++|+.|+++|++|+||||||||||+..++.....+++++||+++|.||+.++|||+|||+|.++.+
T Consensus 18 eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~ 91 (289)
T 1uoc_A 18 DVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGN 91 (289)
T ss_dssp EECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCC
T ss_pred EehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCC
Confidence 46679999999999999999999999999999998774233344789999999999999999999999998755
No 6
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=99.86 E-value=2.2e-22 Score=149.84 Aligned_cols=74 Identities=18% Similarity=0.162 Sum_probs=65.3
Q ss_pred cCccccHHHHHHHHHHHhccCCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeeeecCC
Q psy6931 5 QHPMILQHNITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNT 78 (81)
Q Consensus 5 ~~~~~NF~~~l~~i~~~I~~a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~~~~~ 78 (81)
.|.+.||+++|+.|+++|++|+||||||||||+..++......++++||+++|.||+.++|||+|||+|.++.+
T Consensus 25 eVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~ 98 (333)
T 2p51_A 25 DVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGN 98 (333)
T ss_dssp EECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSC
T ss_pred EehHhHHHHHHHHHHHHHhhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCC
Confidence 35679999999999999999999999999999998874333446899999999999999999999999987543
No 7
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=96.13 E-value=0.0042 Score=42.38 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=30.1
Q ss_pred HHHHHHHHHhccCCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeee
Q psy6931 13 NITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74 (81)
Q Consensus 13 ~~l~~i~~~I~~a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~ 74 (81)
+.+..+.+.+++..||++|+|.||+.+.. -.|||+|+..+.
T Consensus 25 ~~~~~l~~~l~~~~~vviD~ETTGl~~~~---------------------~~IieIgav~~~ 65 (235)
T 3v9w_A 25 AQLTGLCDRFRGFYPVVIDVETAGFNAKT---------------------DALLEIAAITLK 65 (235)
T ss_dssp ----CHHHHTTTEEEEEEEEEESSSCTTT---------------------BCEEEEEEEEEE
T ss_pred ccccCchhcccCCcEEEEEEeCCCCCCCC---------------------CeEEEEEEEEEE
Confidence 34555778899999999999999995422 258999998775
No 8
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=95.43 E-value=0.013 Score=39.72 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.3
Q ss_pred HHHHhccCCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeeee
Q psy6931 18 YAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75 (81)
Q Consensus 18 i~~~I~~a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~~ 75 (81)
+.+.+++..||+||+|.||+.+. .-.|||+|+..+..
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~---------------------~~~IieIg~v~~~~ 58 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSA---------------------TDALLEIAATTVGM 58 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTT---------------------TBCEEEEEEEEEEE
T ss_pred hhccccCCcEEEEEeeCCCCCCC---------------------CCeeEEEEEEEEEE
Confidence 56678889999999999998542 12589999888764
No 9
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=95.15 E-value=0.016 Score=38.18 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=21.4
Q ss_pred HhccCCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeee
Q psy6931 21 AIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74 (81)
Q Consensus 21 ~I~~a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~ 74 (81)
.+.+..||++|+|.||+.+.. -.|+|+|...+.
T Consensus 8 ~l~~~~~v~iD~ETTGl~~~~---------------------~~IieIg~v~~~ 40 (186)
T 2p1j_A 8 TFGDATFVVLDFETTGLDPQV---------------------DEIIEIGAVKIQ 40 (186)
T ss_dssp -----CEEEEEEEESCSCTTT---------------------CCEEEEEEEEEE
T ss_pred cCcCCCEEEEEEECCCCCCCC---------------------CeEEEEEEEEEE
Confidence 456789999999999985421 148899887654
No 10
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=94.79 E-value=0.023 Score=37.01 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.5
Q ss_pred cCCeEEEeccCCCCcc
Q psy6931 24 SALFVTIDGEFTGLNN 39 (81)
Q Consensus 24 ~a~FVAiD~EFtGl~~ 39 (81)
+..||++|+|.||+.+
T Consensus 4 ~~~~v~iD~ETTGl~~ 19 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDP 19 (180)
T ss_dssp GGCEEEEEEEESSSCT
T ss_pred CCcEEEEEeeCCCCCC
Confidence 4579999999999854
No 11
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=92.27 E-value=0.09 Score=35.56 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeeee
Q psy6931 25 ALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75 (81)
Q Consensus 25 a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~~ 75 (81)
..||+||+|.||+... .-.|||+|+..+..
T Consensus 10 ~~~v~iD~ETTGl~~~---------------------~~~IieIg~v~~~~ 39 (238)
T 1y97_A 10 ETFVFLDLEATGLPSV---------------------EPEIAELSLFAVHR 39 (238)
T ss_dssp SEEEEEEEEESSCGGG---------------------CCCEEEEEEEEEEH
T ss_pred CeEEEEEeeCCCcCCC---------------------CCcEEEEEEEEecc
Confidence 4699999999998532 12488998887653
No 12
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=92.08 E-value=0.081 Score=36.57 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=22.1
Q ss_pred CeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeeee
Q psy6931 26 LFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75 (81)
Q Consensus 26 ~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~~ 75 (81)
.||++|+|.||+.... =.|||+|+..+..
T Consensus 13 ~~vv~D~ETTGl~~~~---------------------d~IiEIgav~v~~ 41 (242)
T 3mxm_B 13 TLIFLDLEATGLPSSR---------------------PEVTELCLLAVHR 41 (242)
T ss_dssp EEEEEEEEESSCGGGC---------------------CCEEEEEEEEEEH
T ss_pred eEEEEEeecCCCCCCC---------------------CeeEEEEEEEecC
Confidence 5999999999996532 3588888876653
No 13
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=91.39 E-value=0.081 Score=35.63 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=15.8
Q ss_pred ccCCeEEEeccCCCCccCC
Q psy6931 23 KSALFVTIDGEFTGLNNGP 41 (81)
Q Consensus 23 ~~a~FVAiD~EFtGl~~~~ 41 (81)
.+..||++|+|.||+.+..
T Consensus 7 ~~~~~v~~D~ETTGL~p~~ 25 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPER 25 (186)
T ss_dssp CTTCEEEEEEEESSSCTTT
T ss_pred CCCcEEEEEEECCCCCCCC
Confidence 4568999999999997653
No 14
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=91.35 E-value=0.13 Score=33.68 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=23.6
Q ss_pred CCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeee
Q psy6931 25 ALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74 (81)
Q Consensus 25 a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~ 74 (81)
..||++|+|.||+.+... | -..-.|||+|...+.
T Consensus 9 ~~~vviD~ETTGl~~~~~----------~------~~~~~Iieig~v~~~ 42 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGA----------H------YEGHKIIEIGAVEVV 42 (194)
T ss_dssp CEEEEEEEEESCCCSSSS----------T------TTTCCEEEEEEEEEE
T ss_pred CCEEEEEeeCCCCCCccc----------C------CCCCEEEEEEEEEEE
Confidence 579999999999965320 0 012458999987764
No 15
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=91.30 E-value=0.15 Score=34.57 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=21.7
Q ss_pred CeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeee
Q psy6931 26 LFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74 (81)
Q Consensus 26 ~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~ 74 (81)
.||+||+|.||+.+.. ..-.|||+|...+.
T Consensus 32 ~~vviD~ETTGl~~~~-------------------d~~~IieIgav~v~ 61 (224)
T 2xri_A 32 YFLVLDFEATCDKPQI-------------------HPQEIIEFPILKLN 61 (224)
T ss_dssp EEEEECCEECCCC-CC-------------------SSCCEEEEEEEEEE
T ss_pred eEEEEEEEcCCCCCCC-------------------CCcceEEEEEEEEe
Confidence 5999999999986531 11369999987665
No 16
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=90.53 E-value=0.18 Score=33.13 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=23.0
Q ss_pred CeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeee
Q psy6931 26 LFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74 (81)
Q Consensus 26 ~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~ 74 (81)
.||+||+|.||+..... ...-.|||+|...+.
T Consensus 11 ~~vviD~ETTGl~~~~~-----------------~~~~~Iieigav~~~ 42 (204)
T 1w0h_A 11 YICIIDFEATCEEGNPP-----------------EFVHEIIEFPVVLLN 42 (204)
T ss_dssp EEEECCCEECCCTTCCT-----------------TSCCCEEEEEEEEEE
T ss_pred EEEEEEEecCCcCCCCC-----------------CCCCcEEEEEEEEEE
Confidence 58999999999865321 123469999987764
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=89.97 E-value=0.18 Score=38.61 Aligned_cols=32 Identities=19% Similarity=0.037 Sum_probs=23.7
Q ss_pred hccCCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeee
Q psy6931 22 IKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74 (81)
Q Consensus 22 I~~a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~ 74 (81)
.+...||++|+|.||+.+.. -.|||||...+.
T Consensus 6 ~~~~~~vv~DlETTGl~p~~---------------------d~IIEIgaV~vd 37 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPAL---------------------DRPAQFAAIRTD 37 (482)
T ss_dssp -CCCEEEEEEEEESSSCTTT---------------------SCEEEEEEEEEC
T ss_pred CCCCCEEEEEEECCCCCCCC---------------------CeEEEEEEEEEE
Confidence 46778999999999995421 258999887654
No 18
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=89.69 E-value=0.28 Score=34.77 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=23.6
Q ss_pred CCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeee
Q psy6931 25 ALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74 (81)
Q Consensus 25 a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~ 74 (81)
-.||+||+|.||+..... ...-.|||+|...+.
T Consensus 78 ~~~vviD~ETTGl~~~~~-----------------~~~~~IIeIgaV~v~ 110 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPP-----------------EFVHEIIEFPVVLLN 110 (299)
T ss_dssp SEEEEECCEECCCTTCCT-----------------TCCCCEEEEEEEEEE
T ss_pred ceEEEEEeecccCCCCCC-----------------CCCCceEEEEEEEEE
Confidence 468999999999964211 123459999988775
No 19
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=89.41 E-value=0.075 Score=35.06 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=12.7
Q ss_pred cCCeEEEeccCCCCcc
Q psy6931 24 SALFVTIDGEFTGLNN 39 (81)
Q Consensus 24 ~a~FVAiD~EFtGl~~ 39 (81)
...||+||+|.||+.+
T Consensus 4 ~~~~vviD~ETTGl~~ 19 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGP 19 (189)
T ss_dssp --CEEEEEEEEEEETT
T ss_pred CCeEEEEEeECcCcCC
Confidence 4589999999999864
No 20
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=89.05 E-value=0.13 Score=34.06 Aligned_cols=17 Identities=35% Similarity=0.476 Sum_probs=14.1
Q ss_pred ccCCeEEEeccCCCCcc
Q psy6931 23 KSALFVTIDGEFTGLNN 39 (81)
Q Consensus 23 ~~a~FVAiD~EFtGl~~ 39 (81)
....||++|+|.||+.+
T Consensus 7 ~~~~~vviD~ETTGl~p 23 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDT 23 (194)
T ss_dssp -CCEEEEEEEEESCSCT
T ss_pred CCCCEEEEEeECCCCCC
Confidence 55689999999999964
No 21
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=89.01 E-value=0.25 Score=36.03 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=21.9
Q ss_pred CeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeeee
Q psy6931 26 LFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75 (81)
Q Consensus 26 ~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~~ 75 (81)
.||++|+|-||+.... =.|||+|+..+..
T Consensus 13 tfVv~DlETTGL~~~~---------------------d~IIEIgaV~v~~ 41 (314)
T 3u3y_B 13 TLIFLDLEATGLPSSR---------------------PEVTELCLLAVHR 41 (314)
T ss_dssp EEEEEEEEESSCGGGC---------------------CCEEEEEEEEEEH
T ss_pred CEEEEEEECCCCCCCC---------------------CeEEEEEEEEEEC
Confidence 4999999999996532 2488888877654
No 22
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=88.28 E-value=0.23 Score=35.60 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=22.9
Q ss_pred CeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeee
Q psy6931 26 LFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74 (81)
Q Consensus 26 ~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~ 74 (81)
.||+||+|.||+..... | ...|||+|...+.
T Consensus 20 ~~vviD~ETTGl~~~~d----------~--------~~eIIEIgaV~vd 50 (308)
T 3cg7_A 20 TLLILDFETTSDAANQD----------Y--------PCEVIQFAIVAYD 50 (308)
T ss_dssp EEEEEEEEECCBTTBCS----------C--------CCCEEEEEEEEEE
T ss_pred eEEEEEeecCCCCCCCC----------C--------CCCeEEEEEEEEE
Confidence 58999999999965321 1 1469999998773
No 23
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=86.51 E-value=0.37 Score=35.27 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=23.5
Q ss_pred CCeEEEeccCCCCccCCCCCCCCCHHHHHHHHHhccccccceeeeeeeee
Q psy6931 25 ALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFK 74 (81)
Q Consensus 25 a~FVAiD~EFtGl~~~~~~~~~dt~eerY~~~k~~v~~f~iiQ~Gl~~F~ 74 (81)
-.||+||+|.||+..... ...-.|||||+..+.
T Consensus 128 ~~~vviD~ETTGl~~~~~-----------------~~~deIIEIgaV~vd 160 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPP-----------------EFVHEIIEFPVVLLN 160 (349)
T ss_dssp SEEEECCCEECCCTTCCT-----------------TCCCCEEECCEEEEE
T ss_pred CeEEEEEEecCCCCCcCC-----------------CCCCeEEEEEEEEEE
Confidence 468999999999954211 123459999988775
No 24
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=81.81 E-value=0.93 Score=35.20 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhccCCeEEEeccCCCCcc
Q psy6931 12 HNITTRYAKAIKSALFVTIDGEFTGLNN 39 (81)
Q Consensus 12 ~~~l~~i~~~I~~a~FVAiD~EFtGl~~ 39 (81)
.+.+..+.+.++.+.+|++|+|.||+..
T Consensus 13 ~~~l~~~~~~l~~~~~va~DtEttgl~~ 40 (605)
T 2kfn_A 13 EETLKAWIAKLEKAPVFAFDTETDSLDN 40 (605)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEESCSCT
T ss_pred HHHHHHHHHhcccCCeEEEEEecCCCCc
Confidence 4666666777778899999999999854
No 25
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=72.48 E-value=2.4 Score=31.90 Aligned_cols=26 Identities=4% Similarity=0.018 Sum_probs=21.7
Q ss_pred HHHHHHHHHhccCCeEEEeccCCCCc
Q psy6931 13 NITTRYAKAIKSALFVTIDGEFTGLN 38 (81)
Q Consensus 13 ~~l~~i~~~I~~a~FVAiD~EFtGl~ 38 (81)
+.|..+.+.+..+..||+|+|+++..
T Consensus 117 e~L~~~l~~L~~~~~vavDtE~~~~~ 142 (428)
T 3saf_A 117 DELVELNEKLLNCQEFAVNLEHHSYR 142 (428)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEEECTT
T ss_pred HHHHHHHHHHhcCCeEEEEEEecCCC
Confidence 56777777888899999999998764
No 26
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=67.13 E-value=4.9 Score=26.28 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=18.4
Q ss_pred HHHHHHhccCCeEEEeccCCCC
Q psy6931 16 TRYAKAIKSALFVTIDGEFTGL 37 (81)
Q Consensus 16 ~~i~~~I~~a~FVAiD~EFtGl 37 (81)
..+...+.++..|++|+|+++.
T Consensus 31 ~~~~~~l~~~~~v~~D~E~~~~ 52 (208)
T 2e6m_A 31 EDISMRLSDGDVVGFDMEWPPI 52 (208)
T ss_dssp HHHHHHCCTTCEEEEEEECCC-
T ss_pred HHHHHHhccCCEEEEEeecCCC
Confidence 3777888999999999999886
No 27
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=64.59 E-value=4.5 Score=29.26 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhccCCeEEEeccCCCCc
Q psy6931 12 HNITTRYAKAIKSALFVTIDGEFTGLN 38 (81)
Q Consensus 12 ~~~l~~i~~~I~~a~FVAiD~EFtGl~ 38 (81)
.+.+..+.+.++.+.+||+|+|+.+..
T Consensus 9 ~~~l~~~~~~l~~~~~va~D~E~~~~~ 35 (375)
T 1yt3_A 9 DDALASLCEAVRAFPAIALDTEFVRTR 35 (375)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEECCS
T ss_pred HHHHHHHHHHHcCCCeEEEEeeecCCC
Confidence 466666677788889999999998763
No 28
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=60.57 E-value=3.2 Score=28.12 Aligned_cols=30 Identities=10% Similarity=-0.071 Sum_probs=20.4
Q ss_pred CccccHHHHHHHHHHH-h-ccCCeEEEeccCC
Q psy6931 6 HPMILQHNITTRYAKA-I-KSALFVTIDGEFT 35 (81)
Q Consensus 6 ~~~~NF~~~l~~i~~~-I-~~a~FVAiD~EFt 35 (81)
.+.+.....+..+.+. + .....|++|+|+.
T Consensus 25 ~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~ 56 (206)
T 1vk0_A 25 GSSTDISPYLSLIREDSILNGNRAVIFDVYWD 56 (206)
T ss_dssp CSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEE
T ss_pred ecHHHHHHHHHHHHHhhhhcCCCEEEEEeecc
Confidence 3445666666665432 2 5678999999986
No 29
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=56.52 E-value=7.1 Score=28.91 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhccCCeEEEeccCCCCc
Q psy6931 12 HNITTRYAKAIKSALFVTIDGEFTGLN 38 (81)
Q Consensus 12 ~~~l~~i~~~I~~a~FVAiD~EFtGl~ 38 (81)
.+.+..+.+.++.+..||+|+|+.++.
T Consensus 93 ~~~L~~~~~~L~~~~~vavDtE~~~~~ 119 (410)
T 2hbj_A 93 STELESMLEDLKNTKEIAVDLEHHDYR 119 (410)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEEECSS
T ss_pred HHHHHHHHHHHhhCCceEEEeeecCCc
Confidence 466766777788889999999998864
No 30
>2auh_B Growth factor receptor-bound protein 14; tyrosine kinase, BPS region, transferase/signaling protein complex; HET: PTR; 3.20A {Homo sapiens}
Probab=45.47 E-value=11 Score=21.29 Aligned_cols=26 Identities=23% Similarity=0.561 Sum_probs=15.2
Q ss_pred HHhccCCeEEEeccCCCCccCCCCCCCCCHHH
Q psy6931 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQ 51 (81)
Q Consensus 20 ~~I~~a~FVAiD~EFtGl~~~~~~~~~dt~ee 51 (81)
..|++-++|||| |+|-..+ ..++|.|
T Consensus 9 RSvS~nslVAMD--FsG~~GR----vIenP~E 34 (59)
T 2auh_B 9 RSISENSLVAMD--FSGQKSR----VIENPTE 34 (59)
T ss_dssp ----CCCCEEEE--CSSSSCC----BCCCHHH
T ss_pred cccccCceEEEe--ecCCccc----eecChHH
Confidence 467888999999 7775432 3456655
No 31
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=41.61 E-value=15 Score=27.38 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhccC-CeEEEeccCCCC
Q psy6931 12 HNITTRYAKAIKSA-LFVTIDGEFTGL 37 (81)
Q Consensus 12 ~~~l~~i~~~I~~a-~FVAiD~EFtGl 37 (81)
.+.+..+.+.++.+ ..||+|+|+++.
T Consensus 24 ~e~L~~~~~~L~~~~~~vavDtE~~~~ 50 (440)
T 3cym_A 24 LPAFRDYCSELASSHGSLAADAERASG 50 (440)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHhcCCeEEEEeeecCC
Confidence 46666667777777 899999998865
No 32
>1r7l_A Phage protein; structural genomics, two layers alpha-beta sandwich, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Bacillus cereus} SCOP: d.277.1.1
Probab=40.97 E-value=12 Score=23.65 Aligned_cols=27 Identities=7% Similarity=-0.289 Sum_probs=24.5
Q ss_pred CccccHHHHHHHHHHHhccCCeEEEec
Q psy6931 6 HPMILQHNITTRYAKAIKSALFVTIDG 32 (81)
Q Consensus 6 ~~~~NF~~~l~~i~~~I~~a~FVAiD~ 32 (81)
++..|.+++|..+++.-.+..|+.+|+
T Consensus 44 k~S~ni~~AW~VVEKlr~~~~~~~i~i 70 (110)
T 1r7l_A 44 LYSQNIESAWQVVEKLEYDVKVTKTDL 70 (110)
T ss_dssp CTTTCHHHHHHHHHHSSSEEEEEECSS
T ss_pred CCCccHHHHHHHHHHHHhhceEEEEec
Confidence 477999999999999999999999884
No 33
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=37.40 E-value=1.1e+02 Score=21.80 Aligned_cols=63 Identities=8% Similarity=0.066 Sum_probs=40.9
Q ss_pred ccHHHHHHHHHHHhccCC--eEEEecc------CCCCccCCCCCCCCCHHHHHHHHHhccc--cccceeeeeeee
Q psy6931 9 ILQHNITTRYAKAIKSAL--FVTIDGE------FTGLNNGPNTTPYDTPAQYYDKIRQGSM--DFLLIQFGLCAF 73 (81)
Q Consensus 9 ~NF~~~l~~i~~~I~~a~--FVAiD~E------FtGl~~~~~~~~~dt~eerY~~~k~~v~--~f~iiQ~Gl~~F 73 (81)
.++.+.+..+.+.++.++ ||+||.. ++|.+... +..+ |..|.-.-++..++ .-.+.-+.|+=+
T Consensus 210 ~g~~~v~~~~~~~l~~~~~vylS~DiDvLDpa~aPgtgtP~-pgGl-t~~e~~~il~~l~~~~~~~vvg~DivEv 282 (330)
T 4g3h_A 210 ENMQEVVQKTKESLKAVDIIYLSLDLDIMDGKLFTSTGVRE-NNGL-SFDELKQLLGLLLESFKDRLKAVEVTEY 282 (330)
T ss_dssp HCHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCSSSSCC-SSCB-CHHHHHHHHHHHHHHTTTTEEEEEEECC
T ss_pred cCHHHHHHHHHHHhcCCCeEEEEEecCcCChhhCCCCCCCC-CCCC-CHHHHHHHHHHHHhhCCCCEEEEEEEEE
Confidence 456667888888888877 9999975 46665433 2333 55666666666666 456666666544
No 34
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=35.88 E-value=25 Score=21.79 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=24.3
Q ss_pred ccccHHHHHHHHHHHhccCCeEEEeccC
Q psy6931 7 PMILQHNITTRYAKAIKSALFVTIDGEF 34 (81)
Q Consensus 7 ~~~NF~~~l~~i~~~I~~a~FVAiD~EF 34 (81)
+--||.+.|..|.+.+.++.--|++-|=
T Consensus 35 ~~L~FrDvL~~I~~vmP~aT~TAFeYED 62 (106)
T 2npt_A 35 PQLLFRDVLDVIGQVLPEATTTAFEYED 62 (106)
T ss_dssp -CCCHHHHHHHHHHHSTTSCCSEEEEEC
T ss_pred ccccHHHHHHHHHHhCccceeeeeeecc
Confidence 3469999999999999999999998663
No 35
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=32.55 E-value=12 Score=28.89 Aligned_cols=15 Identities=0% Similarity=-0.376 Sum_probs=12.5
Q ss_pred CeEEEeccCCCCccC
Q psy6931 26 LFVTIDGEFTGLNNG 40 (81)
Q Consensus 26 ~FVAiD~EFtGl~~~ 40 (81)
++||+||||.|+...
T Consensus 11 ~~valDtE~~~~~~~ 25 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPM 25 (540)
T ss_dssp TTCEEEEEESSSCTT
T ss_pred CceEEEEEecCCccC
Confidence 579999999998643
No 36
>2ra9_A Uncharacterized protein DUF1285; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Shewanella baltica}
Probab=28.23 E-value=20 Score=23.58 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=13.8
Q ss_pred hccCCeEEEeccCCC
Q psy6931 22 IKSALFVTIDGEFTG 36 (81)
Q Consensus 22 I~~a~FVAiD~EFtG 36 (81)
+++|+|+|+|.+..|
T Consensus 74 VEDaPfvav~~~~~~ 88 (150)
T 2ra9_A 74 VEDAPLLIVDFERAQ 88 (150)
T ss_dssp ESSCSEEEEEEEESS
T ss_pred EeccCeEEEEEEEec
Confidence 678999999999997
No 37
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=24.80 E-value=22 Score=27.96 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=12.0
Q ss_pred eEEEeccCCCCccC
Q psy6931 27 FVTIDGEFTGLNNG 40 (81)
Q Consensus 27 FVAiD~EFtGl~~~ 40 (81)
+|++|+|=||+...
T Consensus 1 ~vv~D~ETtGl~~~ 14 (698)
T 1x9m_A 1 MIVSDIEANALLES 14 (698)
T ss_dssp CEEEEEEESSCGGG
T ss_pred CEEEEcCCCCcCCC
Confidence 58999999999754
No 38
>2re3_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.50A {Silicibacter pomeroyi dss-3}
Probab=23.23 E-value=23 Score=24.20 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=14.5
Q ss_pred HhccCCeEEEeccCCCC
Q psy6931 21 AIKSALFVTIDGEFTGL 37 (81)
Q Consensus 21 ~I~~a~FVAiD~EFtGl 37 (81)
.+++|+|||+|.+..|-
T Consensus 90 ~VEDaPFvav~~~~~~~ 106 (194)
T 2re3_A 90 RVDDAPFVAVDVEVAGQ 106 (194)
T ss_dssp EESSCSEEEEEEEEESC
T ss_pred EEecCCEEEEEEEEecC
Confidence 36789999999999874
No 39
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=22.23 E-value=22 Score=23.94 Aligned_cols=11 Identities=27% Similarity=0.051 Sum_probs=8.8
Q ss_pred eEEEeccCCCC
Q psy6931 27 FVTIDGEFTGL 37 (81)
Q Consensus 27 FVAiD~EFtGl 37 (81)
-+-+||||+|-
T Consensus 24 r~FlDTEFt~d 34 (190)
T 4hec_A 24 RYFYDTEFIED 34 (190)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEeeeecCC
Confidence 46799999973
No 40
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=21.48 E-value=1.2e+02 Score=17.13 Aligned_cols=31 Identities=3% Similarity=0.029 Sum_probs=23.8
Q ss_pred cccHHHHHHHHHHHh---ccCCeEEEeccCCCCc
Q psy6931 8 MILQHNITTRYAKAI---KSALFVTIDGEFTGLN 38 (81)
Q Consensus 8 ~~NF~~~l~~i~~~I---~~a~FVAiD~EFtGl~ 38 (81)
-.|-.+.+..+.+.. ...+.|-+|..++|..
T Consensus 33 ~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~ 66 (133)
T 2r25_B 33 ACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVD 66 (133)
T ss_dssp ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSC
T ss_pred ECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCC
Confidence 467788888777644 4679999999999863
No 41
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=21.34 E-value=1.2e+02 Score=17.02 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHHh---ccCCeEEEeccCCCC
Q psy6931 8 MILQHNITTRYAKAI---KSALFVTIDGEFTGL 37 (81)
Q Consensus 8 ~~NF~~~l~~i~~~I---~~a~FVAiD~EFtGl 37 (81)
-.|..+.+..+.+.- ...+.|-+|..++|.
T Consensus 41 ~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~ 73 (146)
T 3ilh_A 41 VTSGNAAINKLNELYAAGRWPSIICIDINMPGI 73 (146)
T ss_dssp ESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSS
T ss_pred cCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCC
Confidence 367788888777655 678999999999885
Done!