Your job contains 1 sequence.
>psy6931
MAPTQHPMILQHNITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGS
MDFLLIQFGLCAFKYDNTTKR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6931
(81 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F5H1Z4 - symbol:PARN "Poly(A)-specific ribonucl... 177 1.3e-13 1
UNIPROTKB|H3BT23 - symbol:PARN "Poly(A)-specific ribonucl... 177 1.3e-13 1
UNIPROTKB|F1NEI8 - symbol:F1NEI8 "Uncharacterized protein... 186 1.6e-13 1
MGI|MGI:1921358 - symbol:Parn "poly(A)-specific ribonucle... 185 2.1e-13 1
RGD|1565449 - symbol:Parn "poly(A)-specific ribonuclease"... 182 4.3e-13 1
UNIPROTKB|F6XU41 - symbol:PARN "Uncharacterized protein" ... 182 4.5e-13 1
UNIPROTKB|P69341 - symbol:PARN "Poly(A)-specific ribonucl... 178 1.2e-12 1
UNIPROTKB|O95453 - symbol:PARN "Poly(A)-specific ribonucl... 177 1.5e-12 1
UNIPROTKB|E2QZA0 - symbol:PARN "Uncharacterized protein" ... 171 4.4e-12 1
ZFIN|ZDB-GENE-040426-880 - symbol:parn "poly(A)-specific ... 167 1.9e-11 1
UNIPROTKB|E1BVT8 - symbol:PNLDC1 "Uncharacterized protein... 111 1.4e-05 1
TAIR|locus:2012100 - symbol:AHG2 "ABA-HYPERSENSITIVE GERM... 106 7.1e-05 1
UNIPROTKB|H3BVG1 - symbol:PARN "Poly(A)-specific ribonucl... 92 0.00013 1
>UNIPROTKB|F5H1Z4 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001374 InterPro:IPR006941 InterPro:IPR012337
Pfam:PF01424 Pfam:PF04857 PROSITE:PS51061 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC009167 EMBL:AC092291
HGNC:HGNC:8609 ChiTaRS:PARN IPI:IPI01009342
ProteinModelPortal:F5H1Z4 SMR:F5H1Z4 Ensembl:ENST00000538472
ArrayExpress:F5H1Z4 Bgee:F5H1Z4 Uniprot:F5H1Z4
Length = 207
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 34/66 (51%), Positives = 47/66 (71%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>UNIPROTKB|H3BT23 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC009167 EMBL:AC092291
HGNC:HGNC:8609 ChiTaRS:PARN Ensembl:ENST00000562896 Bgee:H3BT23
Uniprot:H3BT23
Length = 109
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 34/66 (51%), Positives = 47/66 (71%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 41 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 100
Query: 76 DNTTKR 81
D T +
Sbjct: 101 DYTDSK 106
>UNIPROTKB|F1NEI8 [details] [associations]
symbol:F1NEI8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IEA] [GO:0019901 "protein kinase binding"
evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
GO:GO:0005634 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0004535 GO:GO:0000289 GeneTree:ENSGT00530000063673
OMA:LEQTDSC EMBL:AADN02023913 IPI:IPI00576818
Ensembl:ENSGALT00000004886 Uniprot:F1NEI8
Length = 631
Score = 186 (70.5 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/73 (49%), Positives = 54/73 (73%)
Query: 13 NITTRYAKAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQF 68
N++ Y +AI+ A F+ IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QF
Sbjct: 11 NLSKVY-EAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQF 69
Query: 69 GLCAFKYDNTTKR 81
GLC FKYD+T ++
Sbjct: 70 GLCTFKYDHTEEK 82
>MGI|MGI:1921358 [details] [associations]
symbol:Parn "poly(A)-specific ribonuclease (deadenylation
nuclease)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006402 "mRNA catabolic process" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0019901 "protein
kinase binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
MGI:MGI:1921358 GO:GO:0005737 GO:GO:0005730 GO:GO:0000184
GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004535 GO:GO:0000289 KO:K01148
eggNOG:NOG145331 CTD:5073 GeneTree:ENSGT00530000063673
HOGENOM:HOG000007285 HOVERGEN:HBG053512 OrthoDB:EOG4JHCFF
ChiTaRS:PARN EMBL:AK004572 EMBL:AK045181 EMBL:BC021899
IPI:IPI00311534 RefSeq:NP_083037.1 UniGene:Mm.182350 PDB:1UG8
PDB:1WHV PDB:2ROK PDB:3D45 PDBsum:1UG8 PDBsum:1WHV PDBsum:2ROK
PDBsum:3D45 ProteinModelPortal:Q8VDG3 SMR:Q8VDG3 DIP:DIP-48330N
STRING:Q8VDG3 PhosphoSite:Q8VDG3 PaxDb:Q8VDG3 PRIDE:Q8VDG3
Ensembl:ENSMUST00000058884 GeneID:74108 KEGG:mmu:74108
InParanoid:Q8VDG3 EvolutionaryTrace:Q8VDG3 NextBio:339800
Bgee:Q8VDG3 Genevestigator:Q8VDG3 GermOnline:ENSMUSG00000022685
Uniprot:Q8VDG3
Length = 624
Score = 185 (70.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 35/66 (53%), Positives = 49/66 (74%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLCAFKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKY 76
Query: 76 DNTTKR 81
D+T +
Sbjct: 77 DHTDSK 82
>RGD|1565449 [details] [associations]
symbol:Parn "poly(A)-specific ribonuclease" species:10116
"Rattus norvegicus" [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0019901 "protein kinase binding" evidence=ISO]
InterPro:IPR001374 InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR012677 InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857
Pfam:PF08675 PROSITE:PS51061 RGD:1565449 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0004535 KO:K01148
CTD:5073 EMBL:HQ123458 RefSeq:NP_001257344.1 UniGene:Rn.98642
GeneID:360464 KEGG:rno:360464 Uniprot:G3CM75
Length = 624
Score = 182 (69.1 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 13 NITTRYAKAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQF 68
N+ Y +AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QF
Sbjct: 11 NLPKVY-QAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQF 69
Query: 69 GLCAFKYDNTTKR 81
GLCAFKYD+ +
Sbjct: 70 GLCAFKYDHANSK 82
>UNIPROTKB|F6XU41 [details] [associations]
symbol:PARN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402
GO:GO:0004535 KO:K01148 CTD:5073 GeneTree:ENSGT00530000063673
OMA:LEQTDSC Ensembl:ENSCAFT00000029839 EMBL:AAEX03004504
EMBL:AAEX03004505 RefSeq:XP_536966.2 GeneID:479839 KEGG:cfa:479839
Uniprot:F6XU41
Length = 638
Score = 182 (69.1 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AIK A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 EAIKEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>UNIPROTKB|P69341 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001374
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR012677
InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857 Pfam:PF08675
PROSITE:PS51061 GO:GO:0005634 GO:GO:0005737 GO:GO:0000184
GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004535 GO:GO:0000289 KO:K01148
eggNOG:NOG145331 EMBL:BC150015 IPI:IPI00730593
RefSeq:NP_001094588.1 UniGene:Bt.15863 ProteinModelPortal:P69341
SMR:P69341 STRING:P69341 PRIDE:P69341 Ensembl:ENSBTAT00000024087
GeneID:524155 KEGG:bta:524155 CTD:5073 GeneTree:ENSGT00530000063673
HOGENOM:HOG000007285 HOVERGEN:HBG053512 InParanoid:A6QQW2
OMA:LEQTDSC OrthoDB:EOG4JHCFF NextBio:20873902 Uniprot:P69341
Length = 638
Score = 178 (67.7 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 34/66 (51%), Positives = 47/66 (71%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>UNIPROTKB|O95453 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IPI] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0004518
"nuclease activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=TAS] [GO:0007292
"female gamete generation" evidence=TAS] [GO:0009451 "RNA
modification" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR001374
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR012677
InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857 Pfam:PF08675
PROSITE:PS51061 PDB:2A1R GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
GO:GO:0000184 GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330
EMBL:CH471112 GO:GO:0003730 SUPFAM:SSF53098 GO:GO:0007292
GO:GO:0004535 GO:GO:0000289 GO:GO:0009451 DNASU:2987
PharmGKB:PA29072 BRENDA:3.1.13.4 EMBL:AC009167 KO:K01148
eggNOG:NOG145331 CTD:5073 HOGENOM:HOG000007285 HOVERGEN:HBG053512
OMA:LEQTDSC EMBL:AJ005698 EMBL:AK293189 EMBL:AK301648 EMBL:AK315020
EMBL:AC092291 EMBL:BC050029 IPI:IPI00294744 RefSeq:NP_001127949.1
RefSeq:NP_001229921.1 RefSeq:NP_002573.1 UniGene:Hs.253197 PDB:2A1S
PDB:3CTR PDBsum:2A1R PDBsum:2A1S PDBsum:3CTR
ProteinModelPortal:O95453 SMR:O95453 DIP:DIP-31124N IntAct:O95453
STRING:O95453 PhosphoSite:O95453 SWISS-2DPAGE:O95453 PaxDb:O95453
PRIDE:O95453 DNASU:5073 Ensembl:ENST00000341484
Ensembl:ENST00000420015 Ensembl:ENST00000437198 GeneID:5073
KEGG:hsa:5073 UCSC:uc010uzc.2 GeneCards:GC16M014529 HGNC:HGNC:8609
HPA:CAB011673 HPA:HPA006314 HPA:HPA012010 MIM:604212
neXtProt:NX_O95453 PharmGKB:PA32949 InParanoid:O95453 ChiTaRS:PARN
EvolutionaryTrace:O95453 NextBio:19548 ArrayExpress:O95453
Bgee:O95453 CleanEx:HS_PARN Genevestigator:O95453
GermOnline:ENSG00000140694 Uniprot:O95453
Length = 639
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 34/66 (51%), Positives = 47/66 (71%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKY 75
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC FKY
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKY 76
Query: 76 DNTTKR 81
D T +
Sbjct: 77 DYTDSK 82
>UNIPROTKB|E2QZA0 [details] [associations]
symbol:PARN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402
GO:GO:0004535 Ensembl:ENSCAFT00000029839 Uniprot:E2QZA0
Length = 496
Score = 171 (65.3 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 35/68 (51%), Positives = 47/68 (69%)
Query: 20 KAIKSALFVTIDGEFT--GLNNGPNTTP----YDTPAQYYDKIRQGSMDFLLIQFGLCAF 73
+AIK A F IDGEF+ G+++GP+ T +DTP + Y K+++ SMDFLL QFGLC F
Sbjct: 17 EAIKEADFFAIDGEFSELGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTF 76
Query: 74 KYDNTTKR 81
KYD T +
Sbjct: 77 KYDYTDSK 84
>ZFIN|ZDB-GENE-040426-880 [details] [associations]
symbol:parn "poly(A)-specific ribonuclease
(deadenylation nuclease)" species:7955 "Danio rerio" [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001374 InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR012677 InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857
Pfam:PF08675 PROSITE:PS51061 ZFIN:ZDB-GENE-040426-880 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0006402
GO:GO:0004535 KO:K01148 eggNOG:NOG145331 CTD:5073
HOGENOM:HOG000007285 HOVERGEN:HBG053512 EMBL:AY398393 EMBL:BC050496
IPI:IPI00501510 IPI:IPI00554410 RefSeq:NP_957382.1 UniGene:Dr.78689
ProteinModelPortal:Q7ZU92 SMR:Q7ZU92 STRING:Q7ZU92 PRIDE:Q7ZU92
GeneID:791461 KEGG:dre:791461 NextBio:20930638 ArrayExpress:Q7ZU92
Uniprot:Q7ZU92
Length = 660
Score = 167 (63.8 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 21 AIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYD 76
A++ A F++IDGEFTG+++GP+ T DTP + Y K+R+ SM+FLL QFG+C F+YD
Sbjct: 18 AVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHSMNFLLFQFGVCTFRYD 77
>UNIPROTKB|E1BVT8 [details] [associations]
symbol:PNLDC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00530000063673 OMA:SCDRESC
EMBL:AADN02035516 IPI:IPI00600799 Ensembl:ENSGALT00000018991
Uniprot:E1BVT8
Length = 529
Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 25 ALFVTIDGEFTGLNNG-P-NTTP--YDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTTK 80
A F+ +D EFTGL++ P N P +D+PA+ Y K+RQ F + Q GL F +N+ K
Sbjct: 22 AAFLGLDMEFTGLHSAFPQNNQPSLFDSPAERYQKVRQSVQRFTITQLGLAIFSEENSNK 81
>TAIR|locus:2012100 [details] [associations]
symbol:AHG2 "ABA-HYPERSENSITIVE GERMINATION 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0009451 "RNA
modification" evidence=ISS] [GO:0006970 "response to osmotic
stress" evidence=IMP] [GO:0009651 "response to salt stress"
evidence=IMP] [GO:0009737 "response to abscisic acid stimulus"
evidence=IMP] [GO:0009751 "response to salicylic acid stimulus"
evidence=IMP] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634
GO:GO:0005737 GO:GO:0006952 GO:GO:0006950 GO:GO:0046872
GO:GO:0006397 GO:GO:0009751 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004535 EMBL:AC002304 KO:K01148 EMBL:AB194966
EMBL:AB223028 EMBL:AB223029 EMBL:AB223027 IPI:IPI00525311
IPI:IPI00846849 IPI:IPI00929965 RefSeq:NP_001077725.4
RefSeq:NP_175983.5 UniGene:At.49981 ProteinModelPortal:Q9LG26
SMR:Q9LG26 STRING:Q9LG26 PRIDE:Q9LG26 EnsemblPlants:AT1G55870.1
GeneID:842037 KEGG:ath:AT1G55870 TAIR:At1g55870 eggNOG:NOG145331
HOGENOM:HOG000078691 InParanoid:Q9LG26 OMA:GVCPFRW PhylomeDB:Q9LG26
ProtClustDB:CLSN2927348 Genevestigator:Q9LG26 GermOnline:AT1G55870
Uniprot:Q9LG26
Length = 689
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 22 IKSALFVTIDGEFTGLNNGP--NTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
+K+A FV ID E TG+ + P ++ +D Y K++ + F ++QFG+C F++D+ T
Sbjct: 57 VKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRT 116
Query: 80 K 80
+
Sbjct: 117 Q 117
>UNIPROTKB|H3BVG1 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC009167 EMBL:AC092291
HGNC:HGNC:8609 ChiTaRS:PARN ProteinModelPortal:H3BVG1 SMR:H3BVG1
Ensembl:ENST00000563641 Bgee:H3BVG1 Uniprot:H3BVG1
Length = 65
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 20 KAIKSALFVTIDGEFTGLNNGPN----TTPYDTPAQYYDKIRQ 58
+AI+ A F IDGEF+G+++GP+ T +DTP + Y K+++
Sbjct: 17 QAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKK 59
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 81 81 0.00091 102 3 11 22 0.39 29
29 0.42 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 510 (54 KB)
Total size of DFA: 100 KB (2071 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 8.74u 0.06s 8.80t Elapsed: 00:00:10
Total cpu time: 8.74u 0.06s 8.80t Elapsed: 00:00:12
Start: Thu Aug 15 12:43:06 2013 End: Thu Aug 15 12:43:18 2013