RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6931
         (81 letters)



>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex
          subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score = 64.9 bits (158), Expect = 4e-15
 Identities = 13/61 (21%), Positives = 20/61 (32%)

Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
          + I+   +V +D EF G+   P           Y  +R       +IQ GL         
Sbjct: 19 QVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEY 78

Query: 80 K 80
           
Sbjct: 79 P 79


>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 286

 Score = 65.3 bits (159), Expect = 5e-15
 Identities = 13/61 (21%), Positives = 19/61 (31%)

Query: 20 KAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLCAFKYDNTT 79
          + +     V+I  EF G    P  T       +Y  +R        IQ GL     +   
Sbjct: 30 QLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNK 89

Query: 80 K 80
           
Sbjct: 90 P 90


>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional
           uracil-DNA glycosylase SMUG1 {African clawed frog
           (Xenopus laevis) [TaxId: 8355]}
          Length = 245

 Score = 23.7 bits (51), Expect = 3.3
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 39  NGPNTTPYDTPAQYYDKIRQGSMDFLLIQFGLC 71
           +G N TP D P    D + +   + L     + 
Sbjct: 149 SGKNLTPTDLPKAQRDTLLEICDEALCQAVRVL 181


>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 505

 Score = 22.8 bits (48), Expect = 6.2
 Identities = 5/55 (9%), Positives = 10/55 (18%), Gaps = 2/55 (3%)

Query: 1   MAPTQHPMILQHNITTRYAKAIKSALFVTIDGEFTGLNNGPNTTPYDTPAQYYDK 55
           M    +     +       +  +       D      N G   T      +    
Sbjct: 321 MFAVHNWPRWGNAEIVEVLEKQRDLYGYLHDQTLHLANQG--VTIGQVHNRLRLP 373


>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
           coli [TaxId: 562]}
          Length = 936

 Score = 22.8 bits (48), Expect = 6.8
 Identities = 7/39 (17%), Positives = 17/39 (43%)

Query: 1   MAPTQHPMILQHNITTRYAKAIKSALFVTIDGEFTGLNN 39
               +   +++ N  + Y   ++  L +T+ G   G+ N
Sbjct: 896 ADENKPAGLVKLNPASEYPPGLEDTLILTMKGIAAGMQN 934


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 292,154
Number of extensions: 11039
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 8
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)