BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6932
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49963|SRP19_DROME Signal recognition particle 19 kDa protein OS=Drosophila
melanogaster GN=Srp19 PE=2 SV=2
Length = 160
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 92/128 (71%)
Query: 8 KHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLY 67
KH D+ERW+CIYPAYINRKKT EGRR+PK VDNP+Y +I DVLS + L++ +ENK Y
Sbjct: 16 KHNDMERWICIYPAYINRKKTRQEGRRLPKENCVDNPSYIEIRDVLSVSNLQFLMENKKY 75
Query: 68 PREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQN 127
RE S E RGR RVQL+N DG+ N DFPTRE++MLH+ + IP+LK+RQ K +S
Sbjct: 76 CRENSSEMEFRGRVRVQLRNVDGTLYNNDFPTRESIMLHIASKIPQLKTRQNKSGDSYHQ 135
Query: 128 QQRDLSGG 135
Q + S
Sbjct: 136 QSQPQSNA 143
>sp|Q5RBR1|SRP19_PONAB Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19
PE=2 SV=2
Length = 144
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
MA + D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT +I DV S GL
Sbjct: 1 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV 60
Query: 61 HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
+E NK+Y RE +++ RGR RVQLK +DGS FP+R++VML+ +IPKLK+R
Sbjct: 61 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120
Query: 120 KQANSEQNQQR 130
K ++Q+ Q+
Sbjct: 121 KTGGADQSLQQ 131
>sp|P09132|SRP19_HUMAN Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19
PE=1 SV=3
Length = 144
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
MA + D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT +I DV S GL
Sbjct: 1 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV 60
Query: 61 HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
+E NK+Y RE +++ RGR RVQLK +DGS FP+R++VML+ +IPKLK+R
Sbjct: 61 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120
Query: 120 KQANSEQNQQR 130
K ++Q+ Q+
Sbjct: 121 KTGGADQSLQQ 131
>sp|Q3ZBG7|SRP19_BOVIN Signal recognition particle 19 kDa protein OS=Bos taurus GN=SRP19
PE=2 SV=1
Length = 144
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
MA + D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT +I DV + GL
Sbjct: 1 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCAAVGLNV 60
Query: 61 HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
+E NK+Y RE +++ RGR RVQLK +DGS FP+R++VML+ +IPKLK+R
Sbjct: 61 FLEKNKMYSREWNRDLQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120
Query: 120 KQANSEQNQQR 130
K +Q+ Q+
Sbjct: 121 KTGGGDQSLQQ 131
>sp|Q9D7A6|SRP19_MOUSE Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19
PE=2 SV=1
Length = 144
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
Query: 1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
MA + D +R++ IYPAY+N KKT+AEGRRIP +KAV+NPT +I DV S GL
Sbjct: 1 MACSAARPPADQDRFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNA 60
Query: 61 HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
+E NK+Y RE +++ RGR RVQLK +DGS FP+R++VML++ +IPKLK+R
Sbjct: 61 FLEKNKMYSREWNRDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQ 120
Query: 120 KQANSE 125
K ++
Sbjct: 121 KSGGAD 126
>sp|P49964|SRP19_ORYSJ Signal recognition particle 19 kDa protein OS=Oryza sativa subsp.
japonica GN=SRP19 PE=1 SV=1
Length = 136
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 5/113 (4%)
Query: 10 TDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYP 68
+ +++W IYP Y+N KKT+AEGRRI KA +PT +I D S + + IE +K YP
Sbjct: 8 SSIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYP 67
Query: 69 REISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQ 121
R+ F GR RVQLK DDGSPVNP T++ +M+ + L+PK R KQ
Sbjct: 68 RDF----FQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQ 116
>sp|O61749|SRP19_CAEEL Probable signal recognition particle 19 kDa protein
OS=Caenorhabditis elegans GN=F37F2.2 PE=3 SV=3
Length = 160
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 79/119 (66%), Gaps = 2/119 (1%)
Query: 1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
M ++ ++ + +RW+ IYPAYI++KKT +GR+I + AV+NPT +I DVL+ G
Sbjct: 1 MTSVASEPLSSQKRWIVIYPAYIDKKKTAKQGRKISQILAVENPTSVEIHDVLAAVGFNP 60
Query: 61 HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQ 118
+E K YPR+ ++ V+GR RVQLKNDDG+ + + TR+ + + +IPKLK+RQ
Sbjct: 61 LLERTKCYPRDGERDFEVQGRVRVQLKNDDGTAKH-EQKTRDEIFKMVAEMIPKLKTRQ 118
>sp|Q943Z6|SRP19_ARATH Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana
GN=SRP19 PE=2 SV=1
Length = 145
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 5/108 (4%)
Query: 11 DVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPR 69
++++WV IYP YIN KKT+AEGRRI +K+ +NP +I D L +E +K YPR
Sbjct: 7 NIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEIDKAYPR 66
Query: 70 EISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSR 117
+ + GR RVQLK +DG+ +NP +R+ +M + L+P+ R
Sbjct: 67 DFMQV----GRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPER 110
>sp|Q554G7|SRP19_DICDI Signal recognition particle 19 kDa protein homolog OS=Dictyostelium
discoideum GN=srp19 PE=3 SV=1
Length = 178
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 4 IDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE 63
+D ++W +YP +IN + T +GR++ K V NPT +I + + GL IE
Sbjct: 9 VDVSTIPGFKKWYIVYPNHINSELTKEKGRKVSKEHGVKNPTLPEIAEATAQLGLPCIIE 68
Query: 64 -NKLYPREISKEHFVRGRARVQLKNDDGS-PVNPDFPTREAVMLHLGALI 111
+K YP KE F+RGR R+ D + P NP P + +++ + I
Sbjct: 69 TSKGYP----KEFFLRGRLRINFFCDGTTMPRNPHIPNKTVLLVKIAERI 114
>sp|A9AAJ9|SRP19_METM6 Signal recognition particle 19 kDa protein OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=srp19 PE=3
SV=1
Length = 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 18 IYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPRE 70
I+P YI+ K+T EGR++ K AV +P KDI D ++ GL+Y IEN K YPRE
Sbjct: 6 IWPTYIDSKRTKNEGRKVSKEFAVQSPKLKDIADKINKMGLEYSIENKKSYPRE 59
>sp|P41922|SEC65_YARLI Signal recognition particle SEC65 subunit OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SEC65 PE=3 SV=1
Length = 310
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 8 KHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKL 66
+ +D + W +YP Y ++ KT+ EGRR+P AV+NP + I + L E +K
Sbjct: 114 QESDFKDWQIVYPVYFDKNKTVGEGRRVPLELAVENPLGQTIAEACKMLTLPSIYEAHKT 173
Query: 67 YPREISKEHFVRGRARVQLKND 88
+P++ + GR RVQLK+D
Sbjct: 174 HPKDWANP----GRVRVQLKDD 191
>sp|Q6LY84|SRP19_METMP Signal recognition particle 19 kDa protein OS=Methanococcus
maripaludis (strain S2 / LL) GN=srp19 PE=3 SV=1
Length = 89
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPRE 70
+ ++PAYI+ K+T EGR++PK A+ NP K+I + GL+Y +EN K YP+E
Sbjct: 4 IILWPAYIDLKRTKNEGRKVPKEIAIQNPKLKEIASKIKKMGLEYSVENKKSYPKE 59
>sp|A4FX62|SRP19_METM5 Signal recognition particle 19 kDa protein OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=srp19 PE=3
SV=1
Length = 89
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 18 IYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPRE 70
I+PAYI+ K+T EGR++PK AV NP KDI L GL+Y IE+ K YP++
Sbjct: 6 IWPAYIDLKRTKNEGRKVPKEFAVQNPKLKDIAGKLKKMGLEYSIEHKKSYPKD 59
>sp|A6VG52|SRP19_METM7 Signal recognition particle 19 kDa protein OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=srp19 PE=3
SV=1
Length = 89
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPRE 70
+ I+PAYI+ K+T EGR++PK AV NP KDI D + GL++ IE K YP E
Sbjct: 4 MIIWPAYIDIKRTKNEGRKVPKEFAVANPKLKDIADKIKKMGLEHSIEIKKSYPME 59
>sp|Q6BM93|SEC65_DEBHA Signal recognition particle SEC65 subunit OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=SEC65 PE=3 SV=1
Length = 269
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 7 KKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NK 65
++ +++++ IYP Y ++ ++ +GRR+ ++KAV NP K I D L +E +K
Sbjct: 79 EERAELKKFQIIYPCYFDKSRSHKDGRRVSESKAVSNPLAKTISDACRHYNLPVMLELDK 138
Query: 66 LYPREISKEHFVRGRARVQLK--NDDGSPVNPDFPTREAVM 104
+P++ GR RV +K N +G PV+ F T+ AV+
Sbjct: 139 THPQDFGNP----GRVRVLIKDNNKNGMPVDSRFKTKRAVL 175
>sp|B8D570|SRP19_DESK1 Signal recognition particle 19 kDa protein OS=Desulfurococcus
kamchatkensis (strain 1221n / DSM 18924) GN=srp19 PE=3
SV=1
Length = 95
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 14 RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPR 69
R + +YPAYI+ KK+ +EGR+I KAV NP+ K+I + GL E K YPR
Sbjct: 8 RRIVVYPAYIDSKKSRSEGRKISLGKAVPNPSIKEIIEASERLGLNPLYEEKHYPR 63
>sp|A6UPB8|SRP19_METVS Signal recognition particle 19 kDa protein OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp19
PE=3 SV=1
Length = 89
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPRE 70
+ I+PAY + K+T EGR++PK+ V NP KDI ++ G +Y I+N K YP+E
Sbjct: 4 IVIWPAYFDLKRTKNEGRKVPKSFGVLNPKLKDIVSIIEKMGHEYSIDNKKSYPKE 59
>sp|Q58440|SRP19_METJA Signal recognition particle 19 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp19 PE=1 SV=1
Length = 87
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 18 IYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHI-ENKLYPRE 70
I+P+YI++KK+ EGR++P+ A++ P+ KDI+ L GL+ I +K YPR+
Sbjct: 3 IWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQ 56
>sp|Q6FP52|SEC65_CANGA Signal recognition particle SEC65 subunit OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SEC65 PE=3 SV=1
Length = 264
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 2 ATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYH 61
A I ++ +V+++ +YP Y ++ ++ EGRR+P AV+NP K I D + GL
Sbjct: 76 APITKQELDEVKKFQVLYPCYFDKNRSHKEGRRVPIEMAVENPLAKTISDAVREYGLLSI 135
Query: 62 IE-NKLYPREISKEHFVRGRARVQLKND 88
E +K +P++ GR RV LK +
Sbjct: 136 FEGDKCHPQDFGNP----GRIRVLLKEE 159
>sp|O13475|SEC65_KLULA Signal recognition particle SEC65 subunit OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=SEC65 PE=3 SV=2
Length = 270
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 6 TKKHTD-VERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE- 63
TK+ D ++ + +YP Y + ++T A+GRR PK V+NP K I D + G+ E
Sbjct: 81 TKEELDEIKEFQMLYPCYFDTRRTHAQGRRAPKDLCVENPLAKTIADAARSLGIPSIFEG 140
Query: 64 NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLG 108
+K +P++ GR RV +K ++G P + +M +G
Sbjct: 141 SKTHPQDFGNP----GRVRVLIK-ENGKPFVSGIDNKRVLMKRIG 180
>sp|P29478|SEC65_YEAST Signal recognition particle subunit SEC65 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SEC65 PE=1
SV=1
Length = 273
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 3 TIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHI 62
I K +V+R+ +YP Y + ++ EGRR+PK AV+NP K + D + G+
Sbjct: 86 AISKKDLEEVKRFQVLYPCYFDINRSHKEGRRVPKELAVENPLAKTMADAVRELGILCIF 145
Query: 63 E-NKLYPREISKEHFVRGRARVQLKND 88
E K +P++ GR RV K +
Sbjct: 146 EGEKCHPQDFGNP----GRIRVLFKEN 168
>sp|Q8SRC3|SEC65_ENCCU Signal recognition particle SEC65 subunit OS=Encephalitozoon
cuniculi (strain GB-M1) GN=SEC65 PE=3 SV=1
Length = 137
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 18/135 (13%)
Query: 14 RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREIS 72
+ C+YP Y++ ++L+EGR+ K V P Y +I + L ++Y E +K +PR+
Sbjct: 4 KHFCLYPIYMDSARSLSEGRKYRKEICVQRPRYHEIKNALEKLEIEYTDEPSKKHPRDF- 62
Query: 73 KEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQNQQRDL 132
F GR R+ K + G R V+ + I +L+S+ G ++ E ++++
Sbjct: 63 ---FNSGRFRI--KKEYG---------RLFVIEGISQTIAELRSKPG--SSEETSREKQS 106
Query: 133 SGGGGGGKKQGLVYL 147
G G Q VY+
Sbjct: 107 RGKAVHGVVQNGVYV 121
>sp|A6USX5|SRP19_META3 Signal recognition particle 19 kDa protein OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp19
PE=3 SV=1
Length = 90
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHI-ENKLYPREISKE 74
+ I+ AY++ +K+ EGR+IPK V+NP KDI + L G I +NK +P+E +
Sbjct: 4 IIIWSAYLDAEKSRKEGRKIPKELCVNNPKIKDIYNSLRKLGYNAEIVKNKCHPKEWWE- 62
Query: 75 HFVRGRARVQLKNDD 89
+ G +V++ NDD
Sbjct: 63 --IVGYIKVKV-NDD 74
>sp|Q756H7|SEC65_ASHGO Signal recognition particle SEC65 subunit OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SEC65 PE=3 SV=1
Length = 261
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 10 TDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYP 68
D++R+ +YP Y ++ +T A+GR++P AV NP K I D + E K +P
Sbjct: 85 ADLKRFQILYPCYFDKNRTHAQGRQVPLELAVANPLAKTIADACRELEVLCVFEGEKTHP 144
Query: 69 REISKEHFVRGRARVQLKND 88
++ GR RV LK +
Sbjct: 145 QDFGNP----GRVRVLLKEN 160
>sp|Q5V5S9|SRP19_HALMA Signal recognition particle 19 kDa protein OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 /
VKM B-1809) GN=srp19 PE=3 SV=2
Length = 92
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKEH 75
I+PA ++ ++ ++GRR+ AV+NPT +I + G IE +K YPRE
Sbjct: 5 VIWPAALDANRSRSDGRRVSLDLAVENPTVDEIAKAVQQVGYDAVIERDKTYPREYE--- 61
Query: 76 FVRGRARVQLKNDDGS 91
GR RV +K+ D +
Sbjct: 62 ---GRGRVVVKDADDA 74
>sp|O29010|SRP19_ARCFU Signal recognition particle 19 kDa protein OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=srp19 PE=1 SV=1
Length = 104
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 18 IYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKE 74
++ ++ KK+ AEGRRIP+ AV N ++ + GLK+ E K YP+ +E
Sbjct: 6 VWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEACKELGLKFRAEEKKYPKSWWEE 62
>sp|Q3IPF4|SRP19_NATPD Signal recognition particle 19 kDa protein OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=srp19 PE=3
SV=1
Length = 92
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 18 IYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKEHF 76
I+PAY++ T EGRR+ + AV+ PT +I + G IE +K YPRE
Sbjct: 6 IWPAYLDANCTRNEGRRVAEDLAVEEPTVDEIASAVQQVGYDAVIERSKTYPREYEP--- 62
Query: 77 VRGRARVQLKND 88
RGR V+ +D
Sbjct: 63 -RGRVVVKGADD 73
>sp|O14415|SEC65_CANAX Signal recognition particle SEC65 subunit OS=Candida albicans
GN=SEC65 PE=3 SV=1
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 3 TIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHI 62
T + KK D ++ IYP Y + ++ +GRR+ +AV+NP I D GL +
Sbjct: 83 TEEEKKQFD--QFQIIYPCYFDINRSHKQGRRVSIDRAVENPLATTISDACRRLGLPVFL 140
Query: 63 E-NKLYPREISKEHFVRGRARVQLKN--DDGSPVNPDFPTREAVM 104
E +K +P++ GR +V K D+G +NP T+ +
Sbjct: 141 ELDKTHPQDFGNP----GRVKVLFKAVFDNGKLINPKLQTKRVLF 181
>sp|A7IAR2|SRP19_METB6 Signal recognition particle 19 kDa protein OS=Methanoregula
boonei (strain 6A8) GN=srp19 PE=3 SV=1
Length = 91
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 12 VERWVCI-YPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPRE 70
+E+ CI YP Y N + AEGRR+P+ A P D++ L G+ E +P
Sbjct: 1 MEKGECILYPCYFNAALSRAEGRRVPRNIAAKGPNANDVERALRRLGIACQAEEHHHP-- 58
Query: 71 ISKEHFVRGRARV 83
H+ R R+
Sbjct: 59 ---AHWARHEGRI 68
>sp|A8AAJ8|SRP19_IGNH4 Signal recognition particle 19 kDa protein OS=Ignicoccus
hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)
GN=srp19 PE=3 SV=1
Length = 99
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 14 RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPRE 70
++V ++P Y + + EGRR+P+ AV P+ K++ +V + GL+ YPRE
Sbjct: 9 KYVILWPQYFDSSLSRKEGRRVPRELAVARPSQKELLEVAAALGLEAKPLEGKYPRE 65
>sp|B9LUG2|SRP19_HALLT Signal recognition particle 19 kDa protein OS=Halorubrum
lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891
/ ACAM 34) GN=srp19 PE=3 SV=1
Length = 92
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREI 71
+YPAY + ++ +EGRR+P A++ PT +I + G IE K Y RE
Sbjct: 5 VVYPAYFDADRSRSEGRRVPMDLAIEEPTVDEIAKAVQQVGYDAVIEREKTYSREF 60
>sp|Q2NF32|SRP19_METST Signal recognition particle 19 kDa protein OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=srp19 PE=3 SV=1
Length = 92
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYP 68
I+P YIN + + EGR++ ++V+ P ++I L ++Y +E NK YP
Sbjct: 4 IIWPTYINSEHSRGEGRKLSLEESVEEPKIREISQSLKKLKIQYVVEHNKSYP 56
>sp|Q8TV49|SRP19_METKA Signal recognition particle 19 kDa protein OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=srp19 PE=3 SV=1
Length = 103
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPR 69
+ ++PAY + ++ +EGR++PK AV NP ++ + GL ++ +K YP+
Sbjct: 15 IVVWPAYFDADRSRSEGRKVPKRLAVRNPRLTELRHIAEKLGLNPKVQRDKRYPK 69
>sp|A5UNC8|SRP19_METS3 Signal recognition particle 19 kDa protein OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=srp19
PE=3 SV=1
Length = 89
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYP 68
+ ++P Y+++ +L EGR++ K AV+ P +DI+ L L Y + + YP
Sbjct: 2 ITVWPQYLDKNLSLNEGRKVSKEIAVEEPKLQDIEKALKRLNLPYSTQKERSYP 55
>sp|O26267|SRP19_METTH Signal recognition particle 19 kDa protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=srp19 PE=3 SV=1
Length = 91
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYP 68
+ I+P Y++ +K+ +EGRR+P AV++PT +I L+ +E ++ YP
Sbjct: 3 LIIWPTYLDSRKSRSEGRRVPLEYAVESPTASEILRAARKLQLEASMESDRAYP 56
>sp|A2BJ20|SRP19_HYPBU Signal recognition particle 19 kDa protein OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=srp19 PE=3
SV=1
Length = 103
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPR 69
+ ++PA I+ + +EGR+IP AV P ++I + + GL +E YPR
Sbjct: 10 IVLWPANIDSTLSRSEGRKIPLRDAVRKPRVEEIVEAANRLGLNPTVEEAAYPR 63
>sp|A0B5U7|SRP19_METTP Signal recognition particle 19 kDa protein OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=srp19 PE=3 SV=2
Length = 93
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPR 69
+ I+PAY + +++ +GRR+ A AV NP +DI GL +E K YP+
Sbjct: 6 LVIWPAYFDLERSRGQGRRVATANAVRNPKLEDIIRASKDLGLDPVVETEKCYPK 60
>sp|Q8TTY3|SRP19_METAC Signal recognition particle 19 kDa protein OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=srp19 PE=3 SV=2
Length = 101
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPR 69
+ I+PAYI++ ++ + GR I + AV P +I D GL +E K YP+
Sbjct: 7 LVIWPAYIDQTRSRSNGRIISRKNAVKEPHLNEIKDAAKNLGLNPEVEPEKAYPK 61
>sp|A8MBC3|SRP19_CALMQ Signal recognition particle 19 kDa protein OS=Caldivirga
maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM
10307 / IC-167) GN=srp19 PE=3 SV=1
Length = 100
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 15 WVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY--HIENKLYPREIS 72
WV ++ I+ + + GR +P+ AVD PT ++I S GLKY H E K +PR
Sbjct: 7 WV-VWRINIDSTVSRSNGRVVPRQLAVDKPTLEEIAKAASMLGLKYEAHPEKK-HPRHWF 64
Query: 73 KEHFV 77
+E +V
Sbjct: 65 EEDYV 69
>sp|Q8PWM7|SRP19_METMA Signal recognition particle 19 kDa protein OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 /
JCM 11833 / OCM 88) GN=srp19 PE=3 SV=1
Length = 101
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKE 74
+ I+PAYI++ K+ + GR I + ++ P +I + GL +E K YP+ +
Sbjct: 7 LVIWPAYIDQTKSRSSGRIISRKNSIKEPHLNEIKEAARQLGLNPEVEPEKAYPKSWWE- 65
Query: 75 HFVRGRARVQLKNDDGSP 92
V GR V DD P
Sbjct: 66 --VSGRVLV----DDNGP 77
>sp|Q9YDZ7|SRP19_AERPE Signal recognition particle 19 kDa protein OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1) GN=srp19 PE=3 SV=1
Length = 112
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPR 69
+ ++PAY + GRR+P+ V +P +D+ + G + +E YPR
Sbjct: 18 IILWPAYFDSTLPRRLGRRVPRDMGVPSPKPEDVAEAARRAGFEAVVEESSYPR 71
>sp|Q46D06|SRP19_METBF Signal recognition particle 19 kDa protein OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=srp19 PE=3 SV=2
Length = 101
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKE 74
+ I+P Y+++ K+ + GR I + A+ P +I + GL +E +K YP+ +
Sbjct: 7 LVIWPVYLDQTKSRSSGRIISRKNAIKEPQLNEIKEAARQLGLNPEVEPHKAYPKSWWE- 65
Query: 75 HFVRGRARVQLKNDDGSP 92
V GR V DD P
Sbjct: 66 --VSGRVLV----DDNGP 77
>sp|Q9HQ21|SRP19_HALSA Signal recognition particle 19 kDa protein OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=srp19 PE=3 SV=1
Length = 92
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKL-YPR 69
I+PAY + + +GRR+P AV+ P+ +I + G +E + YPR
Sbjct: 5 VIWPAYFDAALSRRDGRRVPMELAVEEPSIDEIATAVQQVGYDAVVERDVAYPR 58
>sp|B0R5G1|SRP19_HALS3 Signal recognition particle 19 kDa protein OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=srp19
PE=3 SV=1
Length = 92
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKL-YPR 69
I+PAY + + +GRR+P AV+ P+ +I + G +E + YPR
Sbjct: 5 VIWPAYFDAALSRRDGRRVPMELAVEEPSIDEIATAVQQVGYDAVVERDVAYPR 58
>sp|Q18K21|SRP19_HALWD Signal recognition particle 19 kDa protein OS=Haloquadratum walsbyi
(strain DSM 16790) GN=srp19 PE=3 SV=1
Length = 93
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKL-YPREISKEH 75
++P Y++ T ++GRR+ A+++P +I + + G IE+ + +PRE
Sbjct: 6 IVWPRYLDASITRSDGRRVSLQDAIEDPEVDEIAEAVQQIGYDAVIEHDVAHPREWGTS- 64
Query: 76 FVRGRARVQLKNDDGSPVNPDFPTREAVMLHL 107
RV +K D S N D A +HL
Sbjct: 65 -----GRVIVKGADDSSKN-DLVQAVAAYIHL 90
>sp|A1RS22|SRP19_PYRIL Signal recognition particle 19 kDa protein OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=srp19 PE=3
SV=1
Length = 95
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHI-ENKLYP 68
++ Y++ + GR +P++KAV PT +++ L G +Y + ++K YP
Sbjct: 8 ILWLVYLDSSVPRSRGRILPRSKAVSKPTLQEVIQALERLGYRYQVYQDKKYP 60
>sp|A4WLN0|SRP19_PYRAR Signal recognition particle 19 kDa protein OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=srp19
PE=3 SV=1
Length = 96
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHI-ENKLYP 68
++ YI+ + GR +P+++AV+ PT +++ L G KY + NK YP
Sbjct: 8 TLWLVYIDLSVPRSRGRILPRSQAVNKPTLQEMVKALEALGYKYEVYPNKKYP 60
>sp|A3DNY0|SRP19_STAMF Signal recognition particle 19 kDa protein OS=Staphylothermus
marinus (strain ATCC 43588 / DSM 3639 / F1) GN=srp19
PE=3 SV=1
Length = 95
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEH 75
+ IYP YI+ + GRRIP+ A+ P ++I + GL E YP K
Sbjct: 10 IVIYPQYIDSSIPRSRGRRIPRNIAIPKPRIEEIIEAAEELGLNPKYEESAYP----KHW 65
Query: 76 FVRGRARV 83
+++GR V
Sbjct: 66 WIKGRIVV 73
>sp|O94407|SEC65_SCHPO Signal recognition particle sec65 subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sec65 PE=3 SV=2
Length = 213
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE------------ 63
+ +YP Y ++ + R +PK KA+ NP K+I DV+ G K +E
Sbjct: 18 IILYPIYFDKSRP-RRFRCVPKDKAILNPLAKNIADVVRDLGYKCKLEPLKTHPADWVNP 76
Query: 64 ---NKLYPREISKEHFVRGRARVQL 85
+ P +I K++ + A+V L
Sbjct: 77 GRVEMVLPEKIQKKYVINEIAKVLL 101
>sp|A1RX38|SRP19_THEPD Signal recognition particle 19 kDa protein OS=Thermofilum pendens
(strain Hrk 5) GN=srp19 PE=3 SV=1
Length = 101
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHI-ENKLYPREISKEH 75
++P Y + K + RR+P+ AV+ PT +I + + G + + EN +P + +
Sbjct: 8 IVWPVYFDSTKP-RKWRRVPRKLAVEKPTLSEIVEAVKREGFSFTVEENAKHP---AYWY 63
Query: 76 FVRGRARVQ 84
V+GR VQ
Sbjct: 64 EVQGRVIVQ 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,650,927
Number of Sequences: 539616
Number of extensions: 2467359
Number of successful extensions: 5759
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 5666
Number of HSP's gapped (non-prelim): 92
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)